Carg24737 (gene) Silver-seed gourd

NameCarg24737
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_259 : 119422 .. 120478 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTCATCGGTAGCAGCTTTCCCCACTTCAACACTTCGAATCTCCTCGAGCATGGCGACTATACTTTTCATGGGGGGTCGATCGTCGGACTTGACGCTGACACAGATCAACGCGACGTCTAGGGTTTGAAGAATTTCGCGCATTGTGGGTTCGGTTCTTTCTCTAAGCTTCGAGTCTAAAATGTCGGCTGGGTTTTTCTTTGTGGCTAAATGGTCTCTAACCCATTGCGCCAAATTGCCTTCTCCAGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGTAATTATGAATCCATGGGGTTTATTTGCCGAAGGGTTTGGAAAGGGGGGGTTAGAAATGAACATACCTGGAGCCATGTACCCGAAAGAGCCAGCAAGTTGTCTGAGTATTGGCTTCTTTGAAGCATCATTGCTGTTGTTTGTACTCACATTACTGGCGAGACCAAAGTCGGCTAGGTATGGCTCAAAGTCATGGCCGAGCAGGACATTCAGTGTTTTCACATCGCCATGTACGATTGGTGGAGTACAATCATGGTGAAGATATGCTAAAGCATGAGCCACTCCTAAGAGGATGTCGTATCTGGCCTCCCATTCTGCTCCTCCTTTTCCATTGTCATGGATAAAAGAGCTCAAGCTTCCATTTGGAAGATAATCATAAAACAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

mRNA sequence

TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

Coding sequence (CDS)

TCTACAAAGGAGATTTGCAATACAAAGATCCTTGAGACGAAAACTTCCTCTGCAGGGTCGATTGAATCACCACCGGCTTTTCCGACTTGGGGTAATGTCGGGTCCAGAGGGTGCCGCCCTGTTAGAACCTCCATTACCACTATACCGAAGCTGTACACATCGCTCTTCTCTGAGACTGTCAATATCGACCCATGTTCTGTAATCATCAGGAGCTTCAAATTCCTGTGGGATCCCCAACCCAGTAGCCTTATTATGTTCTTGTGTCGAATTAATCCCAAAGTACGGATTTCAGAGTTGAAGCCTCCAGATTCGTCGGTTGACCACATTTTCTTCACTGCCACTGTTTTCCCTTTTGGGGTTGTGATTCTGTACACGGCACCGGAGCTTCCAGCACCGATCACGTTCGATTCAGTTAAGTTTTTAATGATG

Protein sequence

STKEICNTKILETKTSSAGSIESPPAFPTWGNVGSRGCRPVRTSITTIPKLYTSLFSETVNIDPCSVIIRSFKFLWDPQPSSLIMFLCRINPKVRISELKPPDSSVDHIFFTATVFPFGVVILYTAPELPAPITFDSVKFLMM
BLAST of Carg24737 vs. TrEMBL
Match: tr|A0A2P2NSJ1|A0A2P2NSJ1_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 85  MFLCRINPKVRISELKPPDSSVDHIFFTATVFPFGVVILYTAPELPAPITFDSVKFLMM 144
           MFLC + P VRISEL  PDSS DHIF TA++ PFG++ LYT PELP PIT   V+F  M
Sbjct: 1   MFLCLMEPSVRISELNAPDSSDDHIFLTASISPFGMITLYTTPELPVPITLADVRFRTM 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P2NSJ1|A0A2P2NSJ1_RHIMU4.4e-1262.71Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24737-RACarg24737-RAmRNA