Carg24727-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCGCCACCAAGCTCTTCGCATTCCCGATGGCCTCTCTCCCGCTCGCCACCGGATCGCGCCGCTCGCAAGCCAGTTTCTATGATGTTCTCCGCGTCAAGAACAACGCCTCCTCTATCGAGATCAAGACCGCCTACCGGAGTCTGGCCAAGATTTACCATCCTGATTCCGCGAGGAGATCGGAGTGCGATGCTTCTTCTGATGATGATGATTATGGTGATGGATGCAGTTTCCTCGAGATTCACAGTGCGTACGAGACGCTTTCGGATCCGGAAACTAGGGCTCAATACGACCTCGCTTTGGCTTCTTTTACGAGACGGCCGTTTCTTCGATCGCGGTCTAGGCCGCACCGGCGATGGGAAACGGATCAGTGCTGGTAGGGATTTGGTGTGATTTGTGATGATTTTGATTTCTGTACAGAAATAGTTTGAATGTTCTTCGTATTGGAGGAATTTTTCGCGGTCTTGGCCGCACTGGCGATGGGAAACGGATCAGTGCTGGTAGGGATTTGATGTTGATTTGTGATGATTTTGATTTCTGTACAGAAATGGTTTGAATGTTCTTCGTATTGGAGGAATTTTTCGCGGTCTAGGCCGCACCGGCGATGAGAAACGGATCAGTGATGGTAGGGATTTGTTGTTGATTTGTGATGATTTTGATTTCTGTACAGAAATTGTTTGA ATGTCCGCCACCAAGCTCTTCGCATTCCCGATGGCCTCTCTCCCGCTCGCCACCGGATCGCGCCGCTCGCAAGCCAGTTTCTATGATGTTCTCCGCGTCAAGAACAACGCCTCCTCTATCGAGATCAAGACCGCCTACCGGAGTCTGGCCAAGATTTACCATCCTGATTCCGCGAGGAGATCGGAGTGCGATGCTTCTTCTGATGATGATGATTATGGTGATGGATGCAGTTTCCTCGAGATTCACAGTGCGTACGAGACGCTTTCGGATCCGGAAACTAGGGCTCAATACGACCTCGCTTTGGCTTCTTTTACGAGACGGCCGTTTCTTCGATCGCGGTCTAGGCCGCACCGGCGATGGGAAACGGATCAGTGCTGAAATGGTTTGAATGTTCTTCGTATTGGAGGAATTTTTCGCGGTCTAGGCCGCACCGGCGATGAGAAACGGATCAGTGATGGTAGGGATTTGTTGTTGATTTGTGATGATTTTGATTTCTGTACAGAAATTGTTTGA ATGTCCGCCACCAAGCTCTTCGCATTCCCGATGGCCTCTCTCCCGCTCGCCACCGGATCGCGCCGCTCGCAAGCCAGTTTCTATGATGTTCTCCGCGTCAAGAACAACGCCTCCTCTATCGAGATCAAGACCGCCTACCGGAGTCTGGCCAAGATTTACCATCCTGATTCCGCGAGGAGATCGGAGTGCGATGCTTCTTCTGATGATGATGATTATGGTGATGGATGCAGTTTCCTCGAGATTCACAGTGCGTACGAGACGCTTTCGGATCCGGAAACTAGGGCTCAATACGACCTCGCTTTGGCTTCTTTTACGAGACGGCCGTTTCTTCGATCGCGGTCTAGGCCGCACCGGCGATGGGAAACGGATCAGTGCTGA MSATKLFAFPMASLPLATGSRRSQASFYDVLRVKNNASSIEIKTAYRSLAKIYHPDSARRSECDASSDDDDYGDGCSFLEIHSAYETLSDPETRAQYDLALASFTRRPFLRSRSRPHRRWETDQC
BLAST of Carg24727-RA vs. NCBI nr
Match: XP_022936967.1 (chaperone protein dnaJ 11, chloroplastic-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 249.2 bits (635), Expect = 7.3e-63 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Carg24727-RA vs. NCBI nr
Match: XP_022936968.1 (chaperone protein dnaJ 11, chloroplastic-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 245.7 bits (626), Expect = 8.1e-62 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of Carg24727-RA vs. NCBI nr
Match: XP_023536215.1 (chaperone protein dnaJ 11, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 239.2 bits (609), Expect = 7.6e-60 Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Carg24727-RA vs. NCBI nr
Match: XP_022940753.1 (chaperone protein dnaJ 11, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47 Identity = 101/125 (80.80%), Postives = 110/125 (88.00%), Query Frame = 0
BLAST of Carg24727-RA vs. NCBI nr
Match: XP_023525212.1 (chaperone protein dnaJ 11, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47 Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 0
BLAST of Carg24727-RA vs. TAIR10
Match: AT3G13310.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 88.2 bits (217), Expect = 3.9e-18 Identity = 55/118 (46.61%), Postives = 65/118 (55.08%), Query Frame = 0
BLAST of Carg24727-RA vs. TAIR10
Match: AT4G36040.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 75.1 bits (183), Expect = 3.4e-14 Identity = 51/111 (45.95%), Postives = 61/111 (54.95%), Query Frame = 0
BLAST of Carg24727-RA vs. TAIR10
Match: AT2G17880.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 74.3 bits (181), Expect = 5.8e-14 Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of Carg24727-RA vs. TAIR10
Match: AT4G39960.1 (Molecular chaperone Hsp40/DnaJ family protein) HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10 Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 0
BLAST of Carg24727-RA vs. TAIR10
Match: AT2G22360.1 (DNAJ heat shock family protein) HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09 Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 0
BLAST of Carg24727-RA vs. Swiss-Prot
Match: sp|Q9FYB5|DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATJ11 PE=1 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 6.2e-13 Identity = 51/111 (45.95%), Postives = 61/111 (54.95%), Query Frame = 0
BLAST of Carg24727-RA vs. Swiss-Prot
Match: sp|Q67S53|DNAJ_SYMTH (Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T / IAM 14863) OX=292459 GN=dnaJ PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09 Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0
BLAST of Carg24727-RA vs. Swiss-Prot
Match: sp|O66921|DNAJ2_AQUAE (Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=dnaJ2 PE=3 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09 Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0
BLAST of Carg24727-RA vs. Swiss-Prot
Match: sp|Q5WHG0|DNAJ_BACSK (Chaperone protein DnaJ OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=dnaJ PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.1e-09 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0
BLAST of Carg24727-RA vs. Swiss-Prot
Match: sp|Q9NVH1|DJC11_HUMAN (DnaJ homolog subfamily C member 11 OS=Homo sapiens OX=9606 GN=DNAJC11 PE=1 SV=2) HSP 1 Score: 61.2 bits (147), Expect = 9.2e-09 Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of Carg24727-RA vs. TrEMBL
Match: tr|A0A0A0K365|A0A0A0K365_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G190690 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 9.8e-40 Identity = 94/128 (73.44%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of Carg24727-RA vs. TrEMBL
Match: tr|A0A218XLQ7|A0A218XLQ7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012177 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22 Identity = 61/116 (52.59%), Postives = 76/116 (65.52%), Query Frame = 0
BLAST of Carg24727-RA vs. TrEMBL
Match: tr|A0A2R6P576|A0A2R6P576_ACTCH (Chaperone protein dnaJ 11 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc33424 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 6.6e-20 Identity = 67/120 (55.83%), Postives = 82/120 (68.33%), Query Frame = 0
BLAST of Carg24727-RA vs. TrEMBL
Match: tr|A0A2R6QD37|A0A2R6QD37_ACTCH (Chaperone protein dnaJ 11 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19307 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 8.6e-20 Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0
BLAST of Carg24727-RA vs. TrEMBL
Match: tr|A9PGZ6|A9PGZ6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_1909s00200g PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19 Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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