Carg24602-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24602-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein
Location	Cucurbita_argyrosperma_scaffold_075 : 585604 .. 587855 (+)
Sequence length	1601

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTCTTCTCATAACAATCTGTTTGATATTTGTTCGCACAGAATGGATTCACTCCCGGATGCTATTTTTCAGTACATTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCGGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTTATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCGAACAATGCAGGTAATCATCATAACTACAAATCTTCTAAGTACACGAATTATGCTCATAACACTCGATAATAGAAGCCCTTTGTGAGATCCCATAGTTAGGAATCACGAATCTCCACAATGGTATGATATTGTCCACTTTGAACATAAGCTCTCATTGCTTTGCTTTTGGTTTCCCCAAAATGCCTCATACCAATGGAAATGTATTCCTTACTTGCTCTCTTGTTGTACATACTTGGAGTCATCAATATAAACCTTTAGCCAATATTCTTTTTTGCATCTTCTCTCTTCTATTCTTTGTATTCATCTAGATCGAGTGTGTGCGTTGTTGTGCGATCCTATCGGTTGGAGAGGGGAAAAAAACATTCTTTATAAGGGTGTGGAAATTTCTCCCTAGCAGACACATTTGAAAAACCTTGAGGGGAAGTCCGAAAGCAAAAGTCCAAATAGGACAATTATCTACTAGCGGAAGGTCTAGGCCGTTACACCTTAATCATGATAGTTACACCTTTAATCACGATAGTTACACCCTTAATCATGATAACTTAGTTTTTTATTTTGTATGGAAACCTTTGATTCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTAAGTATAATCACTGCCATTTAAGGCAACTTGTTCTTGAGATGGATTTCTTGGCTTATAAATTACGTTCTTTTGGGACTCAGGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCAGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACTATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATTGAATAAAAGCATAAGTGAGGCACTTTTTCTCTCGTTTTCTAATTTTAATTAATCATTTACCATTTTTATTCTCTGATTACACAGGTTGACCTGCTAAAATGTTTAACTTGACTTGATCATTCTCTAAGAATGAAGTTATAACTAGATGTCAGTTCCAGAGTTCTTCAATGAAGTCATCTATTAAAGATGTTCCGTTGTTGTTATGGATGTTGTTAGCTTGAGCATAATTTAATTGGTCAACTAGTTTTAGGTTGTAAGTTTGAATTCACATTTGCTTGAATTGTAATATTCAAAAGTAAAAAT

mRNA sequence

GTTCTTCTTCTCATAACAATCTGTTTGATATTTGTTCGCACAGAATGGATTCACTCCCGGATGCTATTTTTCAGTACATTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCGGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTTATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCGAACAATGCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCAGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACTATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATTGAATAAAAGCATAAGTGAGGCACTTTTTCTCTCGTTTTCTAATTTTAATTAATCATTTACCATTTTTATTCTCTGATTACACAGGTTGACCTGCTAAAATGTTTAACTTGACTTGATCATTCTCTAAGAATGAAGTTATAACTAGATGTCAGTTCCAGAGTTCTTCAATGAAGTCATCTATTAAAGATGTTCCGTTGTTGTTATGGATGTTGTTAGCTTGAGCATAATTTAATTGGTCAACTAGTTTTAGGTTGTAAGTTTGAATTCACATTTGCTTGAATTGTAATATTCAAAAGTAAAAAT

Coding sequence (CDS)

ATGGATTCACTCCCGGATGCTATTTTTCAGTACATTTTGTCACATATGAGCAATGCTCGGGATGTGGCAGTCTGCAACTGTGTATCTAAGCGATGGAAATACTCAACACCATACATTAAAAGTCTCTATTTTCCTCGCAATTCCTTCGACAATCATTCAGGTGGGTTGAGTCCCGACATCATCATTTGGAGAATAATATCATCCATTGTTCACTTAGAGGAGCTTGTTGTTTATAGCCCATTTTCTGGTGCTGGTCTTGCTTCATGGCTGTCTAGTGTCGGCCCTTCGCTTCGACGTCTCGAGCTAAGAATGGACAATCTGGTTGATCTTCAGGCTTGTCAAGATAGCCATTCCAAGTTAGAATGCCTTAAATCTGCGGCAAATTTGGAGTCACTTAAATTATGGGGTGTCTTAATGACACATTCACCAAGGTGGGATGTGTTTCAAAAGCTAAGAAACCTTGAGATTGTTGGTGCTAAGTTAGATGATCCTGCTTTGAACACGGCTCTTCGTGCATGTCCTAATCTATCCAACTTATTGCTCCTTGGCTGTGAAGGCCTTACTTCAGTTTCAATTGAACTGAAGCATTTGGAGCAGTGTAAGCTGGATTTCTATGGCTTGGGAAACTGCTCACTTATGATCAATTCTCCTAACATTCAACTCCTTGAAGTTCAAGGCTGTAGCTGGATTAGAGCCTGTGGGACAAGTTCCTTGAGAAGTCTGTCAATATCGAACAATGCAGGAAGAGTTTACATGGTGGATTTTGATCAGCTGGTTTCATTGGAGTCATTGTCCATAAGAGGAGTTCAATGGTGTTGGGATGCAATAAGCAAAATGCTTGAATTAGGGAGTGAGGTGAAGCATCTTTACATGAAAGTTGAGTTCACCGGAGACTTTGATGCACTTGAACCTTTCCCAGAGATTGACTTTGTTGAGTTTTTCAATAACCATCCAAAGTTGCAAAAGTTTGACATTCATGGAGCCATGTTTGCTGCTCTTTGCCAGAAGAACAGCCTTAAAAATGTGGATCCAGATTTTGTAATCTCGTGTTTGGAGGAAGTATCGGTTTCAGTTAGATCGCCGTTGAATGCCGAACAGAAGATGAATACTCTCGAATCGTTGATAAAGTATGGCAAGAATTTGAAGACTATGGTAATAAAAATTCTTCGAATGAAGAGTAGCCATAGCAGTGCAGATGATTTCTTTGATGAGATTTGCAAGTTTAGATATTGGAATCGCAAGATCGTTCGTATTGAATAA

Protein sequence

MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDIIIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKLECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLLLLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRSLSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFDALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRSPLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE

Homology

[Close]

BLAST of Carg24602-RA vs. NCBI nr
Match: XP_022963854.1 (F-box protein At1g10780-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 854.7 bits (2207), Expect = 1.3e-244
Identity = 418/419 (99.76%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQY+LSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. NCBI nr
Match: XP_022963853.1 (F-box protein At1g10780-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 854.7 bits (2207), Expect = 1.3e-244
Identity = 418/419 (99.76%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQY+LSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 22  MDSLPDAIFQYVLSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 81

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 82  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 141

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 142 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 201

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 202 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 261

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 262 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 321

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 322 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 381

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 382 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 440

[Close]

BLAST of Carg24602-RA vs. NCBI nr
Match: XP_023554775.1 (F-box protein At1g10780-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 854.0 bits (2205), Expect = 2.2e-244
Identity = 418/419 (99.76%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYI+SLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIRSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. NCBI nr
Match: XP_022967595.1 (F-box protein At1g10780-like [Cucurbita maxima] >XP_022967596.1 F-box protein At1g10780-like [Cucurbita maxima])

HSP 1 Score: 853.6 bits (2204), Expect = 2.8e-244
Identity = 418/419 (99.76%), Postives = 418/419 (99.76%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL
Sbjct: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS
Sbjct: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSISNN GRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD
Sbjct: 241 LSISNNTGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE
Sbjct: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. NCBI nr
Match: XP_022155010.1 (F-box protein At1g10780 [Momordica charantia])

HSP 1 Score: 785.4 bits (2027), Expect = 9.5e-224
Identity = 381/419 (90.93%), Postives = 404/419 (96.42%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QYILSHMSNARDVAVCNCVSKRWK STPYI+SLYFPRNSFDNHSGG+SPD 
Sbjct: 1   MDSLPDAIVQYILSHMSNARDVAVCNCVSKRWKDSTPYIRSLYFPRNSFDNHSGGVSPDA 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           +IW+I+SSIVHLEELVVYSPFSGAGL+SWLS+VGPSLRRLELRMDNLVDLQACQ+S SKL
Sbjct: 61  VIWKILSSIVHLEELVVYSPFSGAGLSSWLSTVGPSLRRLELRMDNLVDLQACQESPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           EC+K AANLESLKLWGVLMTHSP+WDVF KL+NLEIVGAKL+DPALNTALR CPNLS LL
Sbjct: 121 ECIKCAANLESLKLWGVLMTHSPKWDVFHKLKNLEIVGAKLEDPALNTALRECPNLSKLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEGLTSVSI+LK+LE+CKLDFYGLGNCSLMINSP IQLLEVQGCSWIRA GTSSLRS
Sbjct: 181 LLACEGLTSVSIDLKYLEECKLDFYGLGNCSLMINSPKIQLLEVQGCSWIRAHGTSSLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMV FD+LVSLESLS+RGVQWCWDAISKMLE GS+VKHLYMKVEFTGDFD
Sbjct: 241 LSIANNAGRVYMVSFDKLVSLESLSLRGVQWCWDAISKMLEWGSQVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSL+NVDPDFVISCLEEVSV VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLQNVDPDFVISCLEEVSVLVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKM+TLESLIKYGKNL+TMVIKIL+MKSSHSSADDFFDEICKFRY NRKIVRIE
Sbjct: 361 PLNAEQKMSTLESLIKYGKNLRTMVIKILKMKSSHSSADDFFDEICKFRYLNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. TAIR10
Match: AT1G10780.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 559.7 bits (1441), Expect = 1.5e-159
Identity = 277/419 (66.11%), Postives = 332/419 (79.24%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QYILS++++ARDVA CNCVSKRWK ST  +KS+ F RNSF++       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+ ++ISS   LEELVVYSPF+ +GLASW+  V  SLR LELRMDNL   +   +   KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+  A NLE LKLWGVLM   P+WD+F  LR+LEIVGAK+DD +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S  +  L+VQGCSWIR   T  L++
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSIS+  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFVEFFNNHPKLQ FDIHGAMFAALCQKNSLK ++  F I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK MVI+ILRMKS+HSSADDF D+ICKFR+ N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

[Close]

BLAST of Carg24602-RA vs. TAIR10
Match: AT5G56390.1 (F-box/RNI-like/FBD-like domains-containing protein)

HSP 1 Score: 45.1 bits (105), Expect = 1.3e-04
Identity = 48/214 (22.43%), Postives = 90/214 (42.06%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           +  L D +   ILS + NA+DV     +SKRW+Y    + SL +  +  D   G  S   
Sbjct: 4   ISQLHDELLLGILSLLPNAKDVVATMVLSKRWRYLWMMVPSLVYDDSYQDIDYGRFS--- 63

Query: 61  IIWRIISSIVHLEELVVYSP-------FSGAGLASWLSSVGPSLRRLELRMDNLVDLQAC 120
              R +   + L +  V            G+G     ++    +R+L +++D+     + 
Sbjct: 64  ---RFVDRSLALHKAPVIDTLHFKLGHICGSGDTLIGAAEKCCVRKLIIKIDDTSSRSSK 123

Query: 121 QDSHSKLECLKSAAN--LESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKL-DDPALNTAL 180
            D       L S  +  L  LKL  V++        F  L+ L +   K   +  +N  +
Sbjct: 124 TDQVILPMSLCSGVHIMLADLKLQNVVLVDVSTPVSFPSLKRLRLKSVKYPGNEFVNNLI 183

Query: 181 RACPNLSNLLLLGC--EGLTSVSIELKHLEQCKL 203
            +CP L +L++  C  + +T +++ +  L++  L
Sbjct: 184 SSCPVLEDLVVKQCSDDNVTILTVRVPSLKRLSL 211

[Close]

BLAST of Carg24602-RA vs. Swiss-Prot
Match: sp|Q9SAC4|FB2_ARATH (F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 2.8e-158
Identity = 277/419 (66.11%), Postives = 332/419 (79.24%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QYILS++++ARDVA CNCVSKRWK ST  +KS+ F RNSF++       D 
Sbjct: 1   MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESIMETDDSDS 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+ ++ISS   LEELVVYSPF+ +GLASW+  V  SLR LELRMDNL   +   +   KL
Sbjct: 61  IVRKMISSSRRLEELVVYSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVVVEGPLKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+  A NLE LKLWGVLM   P+WD+F  LR+LEIVGAK+DD +L+ ALRACPNLSNLL
Sbjct: 121 DCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEG+ S+SI+L +LE CKLDFYG GN  L++ S  +  L+VQGCSWIR   T  L++
Sbjct: 181 LLACEGVKSISIDLPYLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCSWIRVPETKFLKN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSIS+  GRVYMVDF+ L SLE+LSIRGVQWCWDAI  +L+   +VKHL+MKVEFTG+ +
Sbjct: 241 LSISSVTGRVYMVDFNNLSSLEALSIRGVQWCWDAICMILQQARDVKHLFMKVEFTGN-E 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFVEFFNNHPKLQ FDIHGAMFAALCQKNSLK ++  F I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVEFFNNHPKLQTFDIHGAMFAALCQKNSLKKLETGFTIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLESL+KY + LK MVI+ILRMKS+HSSADDF D+ICKFR+ N  +V IE
Sbjct: 361 PLNAEQKMNTLESLVKYARGLKRMVIRILRMKSNHSSADDFCDDICKFRHMNEHLVHIE 418

[Close]

BLAST of Carg24602-RA vs. TrEMBL
Match: tr|A0A0A0KGD4|A0A0A0KGD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G411180 PE=4 SV=1)

HSP 1 Score: 755.7 bits (1950), Expect = 5.3e-215
Identity = 367/419 (87.59%), Postives = 394/419 (94.03%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI Q ILSHMSNARDVAVCNCVSKRWK STPYI+SLYFPRNSFDNHSGGLSPDI
Sbjct: 1   MDSLPDAIVQCILSHMSNARDVAVCNCVSKRWKDSTPYIRSLYFPRNSFDNHSGGLSPDI 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPF+GAGLASWLSSVGP+LR LELRMDNLVDLQACQ+S SKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFTGAGLASWLSSVGPTLRHLELRMDNLVDLQACQESPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLE+LKLWGVLMTHSPRWDVFQKL+NLEIVGAK +DPALNTAL ACPNLSNLL
Sbjct: 121 ECLKSAANLETLKLWGVLMTHSPRWDVFQKLKNLEIVGAKFEDPALNTALHACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEGL+SVSIELK LEQCKLDFYGLGNCSL+IN+P +QLLEVQGCSWIRA GTSSLR+
Sbjct: 181 LLACEGLSSVSIELKLLEQCKLDFYGLGNCSLLINAPKLQLLEVQGCSWIRARGTSSLRN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NN GRVYMVDFD+L SLE LS+RG+QWCW+AISK+LE GSEVKHLYMKVEFTGD+D
Sbjct: 241 LSIANNHGRVYMVDFDKLASLEVLSLRGIQWCWNAISKILECGSEVKHLYMKVEFTGDYD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQK+SLK+VDPDF ISCLEEV V+VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKHSLKSVDPDFAISCLEEVWVTVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLES  KY KNLK +VI ILRMKSSH SADDFFD+ICKF++ + KIVRIE
Sbjct: 361 PLNAEQKMNTLESFTKYAKNLKALVINILRMKSSHGSADDFFDDICKFKHCHPKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. TrEMBL
Match: tr|A0A1S4DYC7|A0A1S4DYC7_CUCME (F-box protein At1g10780 OS=Cucumis melo OX=3656 GN=LOC103491319 PE=4 SV=1)

HSP 1 Score: 755.4 bits (1949), Expect = 7.0e-215
Identity = 367/419 (87.59%), Postives = 394/419 (94.03%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI Q ILSHMSNARDVAVCNCVSKRWK STPYI+SLYFPRNSFDNHSGGLSPD 
Sbjct: 1   MDSLPDAIVQCILSHMSNARDVAVCNCVSKRWKDSTPYIRSLYFPRNSFDNHSGGLSPDN 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           IIWRIISSIVHLEELVVYSPF+GAGL+SWLSSVGPSLR LELRMDNLVDLQACQ+S SKL
Sbjct: 61  IIWRIISSIVHLEELVVYSPFTGAGLSSWLSSVGPSLRHLELRMDNLVDLQACQESPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           ECLKSAANLE+LKLWGVLMTHSPRWDVFQKL+NLEIVGAK +DPALNTAL ACPNLSNLL
Sbjct: 121 ECLKSAANLETLKLWGVLMTHSPRWDVFQKLKNLEIVGAKFEDPALNTALHACPNLSNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LL CEGL+SVSIELK LEQCKLDFYGLGNCSL+IN+P +QLLEVQGCSWIRA GT+SLR+
Sbjct: 181 LLACEGLSSVSIELKLLEQCKLDFYGLGNCSLLINAPKLQLLEVQGCSWIRARGTTSLRN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NN GRVYMVDFD+LVSLE+LS+RG+QWCW AIS++LE GSEVKHLYMKVEFTGDFD
Sbjct: 241 LSIANNHGRVYMVDFDKLVSLETLSLRGIQWCWSAISRILECGSEVKHLYMKVEFTGDFD 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQK+SLK+VDPDF ISCLEEV V+VRS
Sbjct: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKHSLKSVDPDFAISCLEEVWVTVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKMNTLES  KY KNLK +VI ILRMKSSH SADDFFD+ICKFR+ + KIVRIE
Sbjct: 361 PLNAEQKMNTLESFTKYAKNLKALVINILRMKSSHGSADDFFDDICKFRHCHPKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. TrEMBL
Match: tr|A0A2P5F929|A0A2P5F929_9ROSA (F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_097730 PE=4 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 4.5e-198
Identity = 333/419 (79.47%), Postives = 376/419 (89.74%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LSHM+NARDVAVCNCVSKRWK S P+I+SLYFPRNSFDNHSG  SPD 
Sbjct: 1   MDSLPDAIVQYVLSHMNNARDVAVCNCVSKRWKDSMPFIRSLYFPRNSFDNHSGRDSPDD 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+WR++SSI  LEELVVYSPFSGAGL+SWLS +G SLR LELRMDNL + Q C +S +KL
Sbjct: 61  IVWRMVSSIEKLEELVVYSPFSGAGLSSWLSVMGSSLRHLELRMDNLAEQQVCHESPTKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+ SA NLESLKLWGVLMTHSP+WDVFQKLRNLEIVGA+L+DPAL T L ACPNL+NLL
Sbjct: 121 DCISSAKNLESLKLWGVLMTHSPKWDVFQKLRNLEIVGARLEDPALTTLLSACPNLANLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEG+ S+SI L +LEQCKLDFYGLGNCS  +NSP I++LEVQGCSWIR   T+ LRS
Sbjct: 181 LLGCEGVRSISINLPNLEQCKLDFYGLGNCSFSMNSPKIEVLEVQGCSWIRVRETNRLRS 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDF +LV+LE LSIRGVQWCWDAI  ML+  SEVKHLYMKVEFTGDF+
Sbjct: 241 LSIANNAGRVYMVDFGKLVALEFLSIRGVQWCWDAICNMLQWASEVKHLYMKVEFTGDFE 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFV+FFNNHPKLQKFD+HGAMFAALCQKNSL++VD  F+I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVDFFNNHPKLQKFDVHGAMFAALCQKNSLRSVDRGFIIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKM+TLES +KYGKNLKTMVIKIL+MKS+HSSADDFFDEIC+FRY NRKIVRIE
Sbjct: 361 PLNAEQKMSTLESFLKYGKNLKTMVIKILQMKSNHSSADDFFDEICRFRYMNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. TrEMBL
Match: tr|A0A2P5BUA2|A0A2P5BUA2_PARAD (F-box domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_209920 PE=4 SV=1)

HSP 1 Score: 694.1 bits (1790), Expect = 1.9e-196
Identity = 330/419 (78.76%), Postives = 373/419 (89.02%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI QY+LSHM+NARDVAVCNCVSKRWK S P+I+SLYFPRNSFDNH G  SPD 
Sbjct: 1   MDSLPDAIVQYLLSHMNNARDVAVCNCVSKRWKDSMPFIRSLYFPRNSFDNHLGRDSPDD 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           I+W ++SSI  LEELVVYSPFSGAGL+SWLS +G SLR LELRMDNL + + C +S SKL
Sbjct: 61  IVWSMVSSIEKLEELVVYSPFSGAGLSSWLSVIGSSLRHLELRMDNLAEQEVCHESPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+ SA NLESLKLWGVLMTHSP+WDVFQ+LRNLEIVGA+L+DPAL T L ACPNL+NLL
Sbjct: 121 DCISSAKNLESLKLWGVLMTHSPKWDVFQQLRNLEIVGARLEDPALTTLLSACPNLTNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEG+ S+SI L HLEQCKLDFYGLGNCS  +NSP I++LEVQGCSWIR   T+ LR 
Sbjct: 181 LLGCEGVRSISINLPHLEQCKLDFYGLGNCSFSMNSPKIEVLEVQGCSWIRVRETNRLRI 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDF +LV+LE LSIRGVQWCWDAI  ML+  SEVKHLYMKVEFTGDF+
Sbjct: 241 LSIANNAGRVYMVDFGKLVALEFLSIRGVQWCWDAICNMLQSASEVKHLYMKVEFTGDFE 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFV+FFNNHPKLQKFD+HGAMFAALCQKNSL++VD  F+I CLEEV ++VRS
Sbjct: 301 ALQPFPEIDFVDFFNNHPKLQKFDVHGAMFAALCQKNSLRSVDRGFIIPCLEEVVITVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKM+TLES +KYGKNLKTMVIKIL+MKS+HSSADDFFDEIC+FRY NRKIVRIE
Sbjct: 361 PLNAEQKMSTLESFLKYGKNLKTMVIKILQMKSNHSSADDFFDEICRFRYMNRKIVRIE 419

[Close]

BLAST of Carg24602-RA vs. TrEMBL
Match: tr|A0A2N9HZB2|A0A2N9HZB2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44962 PE=4 SV=1)

HSP 1 Score: 682.2 bits (1759), Expect = 7.5e-193
Identity = 325/419 (77.57%), Postives = 372/419 (88.78%), Query Frame = 0


Query: 1   MDSLPDAIFQYILSHMSNARDVAVCNCVSKRWKYSTPYIKSLYFPRNSFDNHSGGLSPDI 60
           MDSLPDAI  YILS+++NARDVAVCNCVSKRWK S PYI+SLYFPRNSFDNH+G   PD 
Sbjct: 1   MDSLPDAIVHYILSYINNARDVAVCNCVSKRWKDSLPYIRSLYFPRNSFDNHTGQEQPDN 60

Query: 61  IIWRIISSIVHLEELVVYSPFSGAGLASWLSSVGPSLRRLELRMDNLVDLQACQDSHSKL 120
           ++W++ISSIV LEELVVY+PFSGAGLASWLS  G SLR LELRMDNLV+ Q C +  SKL
Sbjct: 61  VVWKMISSIVRLEELVVYTPFSGAGLASWLSLAGTSLRHLELRMDNLVENQTCNEGPSKL 120

Query: 121 ECLKSAANLESLKLWGVLMTHSPRWDVFQKLRNLEIVGAKLDDPALNTALRACPNLSNLL 180
           +C+ +A NLESLKLWGVLMTH P+WD FQKL +LEIVGA+L+DPAL+ ALRACPNL+NLL
Sbjct: 121 DCISAAKNLESLKLWGVLMTHPPKWDTFQKLWDLEIVGARLEDPALSAALRACPNLTNLL 180

Query: 181 LLGCEGLTSVSIELKHLEQCKLDFYGLGNCSLMINSPNIQLLEVQGCSWIRACGTSSLRS 240
           LLGCEG+ SVSI+L +L+QCKLDFYGLGNCSL + SP I+ LEVQGCSWIR   T+SL++
Sbjct: 181 LLGCEGVRSVSIDLPNLQQCKLDFYGLGNCSLSLTSPKIEFLEVQGCSWIRVRETNSLKN 240

Query: 241 LSISNNAGRVYMVDFDQLVSLESLSIRGVQWCWDAISKMLELGSEVKHLYMKVEFTGDFD 300
           LSI+NNAGRVYMVDF +L +LE LSIRGVQWCWDAIS ML+  SEVKHLYMKVEFTGDF+
Sbjct: 241 LSIANNAGRVYMVDFGKLEALEFLSIRGVQWCWDAISNMLKWASEVKHLYMKVEFTGDFE 300

Query: 301 ALEPFPEIDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVDPDFVISCLEEVSVSVRS 360
           AL+PFPEIDFVEFFN+HPKLQKFDIHGAMFAALCQKNSLK+VD  F+I CLEE+ V+VRS
Sbjct: 301 ALQPFPEIDFVEFFNSHPKLQKFDIHGAMFAALCQKNSLKHVDSGFIIPCLEELVVAVRS 360

Query: 361 PLNAEQKMNTLESLIKYGKNLKTMVIKILRMKSSHSSADDFFDEICKFRYWNRKIVRIE 420
           PLNAEQKM+TLES +KYGKNLKTM IKIL+MKSSHSSADDFF+E+C+F Y NRKIVRIE
Sbjct: 361 PLNAEQKMSTLESFLKYGKNLKTMAIKILQMKSSHSSADDFFEEVCRFTYMNRKIVRIE 419

The following BLAST results are available for this feature:

BLAST of Carg24602-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963854.1	1.3e-244	99.76	F-box protein At1g10780-like isoform X2 [Cucurbita moschata]	[more]
XP_022963853.1	1.3e-244	99.76	F-box protein At1g10780-like isoform X1 [Cucurbita moschata]	[more]
XP_023554775.1	2.2e-244	99.76	F-box protein At1g10780-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967595.1	2.8e-244	99.76	F-box protein At1g10780-like [Cucurbita maxima] >XP_022967596.1 F-box protein At...	[more]
XP_022155010.1	9.5e-224	90.93	F-box protein At1g10780 [Momordica charantia]	[more]

BLAST of Carg24602-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10780.1	1.5e-159	66.11	F-box/RNI-like superfamily protein	[more]
AT5G56390.1	1.3e-04	22.43	F-box/RNI-like/FBD-like domains-containing protein	[more]

BLAST of Carg24602-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SAC4\|FB2_ARATH	2.8e-158	66.11	F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1	[more]

BLAST of Carg24602-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGD4\|A0A0A0KGD4_CUCSA	5.3e-215	87.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G411180 PE=4 SV=1	[more]
tr\|A0A1S4DYC7\|A0A1S4DYC7_CUCME	7.0e-215	87.59	F-box protein At1g10780 OS=Cucumis melo OX=3656 GN=LOC103491319 PE=4 SV=1	[more]
tr\|A0A2P5F929\|A0A2P5F929_9ROSA	4.5e-198	79.47	F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_09773...	[more]
tr\|A0A2P5BUA2\|A0A2P5BUA2_PARAD	1.9e-196	78.76	F-box domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2...	[more]
tr\|A0A2N9HZB2\|A0A2N9HZB2_FAGSY	7.5e-193	77.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44962 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24602	Carg24602	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24602-RA	Carg24602-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24602-RA.exon.1	Carg24602-RA.exon.1	exon
Carg24602-RA.exon.2	Carg24602-RA.exon.2	exon
Carg24602-RA.exon.3	Carg24602-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24602-RA.five_prime_UTR.1	Carg24602-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24602-RA.CDS.1	Carg24602-RA.CDS.1	CDS
Carg24602-RA.CDS.2	Carg24602-RA.CDS.2	CDS
Carg24602-RA.CDS.3	Carg24602-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24602-RA.three_prime_UTR.1	Carg24602-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..293 e-value: 5.6E-25 score: 90.0
None	No IPR available	PANTHER	PTHR44906:SF1	SUBFAMILY NOT NAMED	coord: 1..419
None	No IPR available	PANTHER	PTHR44906	FAMILY NOT NAMED	coord: 1..419
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 64..296
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 2..34