Carg24527-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24527-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_121 : 372952 .. 375917 (-)
Sequence length	1243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTTGTTTTCTTCTATTTGTCTCTTTCATTACTAAAATTTGGGACCCCATTTCTGAGATTTGATTAAACTTCATAATTATGCCATTAAAACTCCTACCCACCTTCTTCTTTTGCTCATATCTTCGTTACTAATCTCAATTATTTAGCCTAAACATAGAATTCAATTATTACTGCTAAAAATTGACCTCTGCTCCTAACCCTATTCATAATTGCATGGCTTGGCTACATTTTTGTTCAAGAACTTCAAAAAATGACAGATTCATAGGAAGCAGAGTTTGTAAGGCCCTAAAATATGATACGTACCTTTTTGATAGCAATCTTTCATGAACTGATATCAGTTTTATGTGATGAACATATGAAGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACTTCCAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTTTGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTAAGTCTTACTGATTTTCATCCATTGGTTCTTTACTCCATCAGCCTCAAGGTACTTACTTACCTAATGTTTCGAACTTTGTTGTGAGATCCTACGTTGGTTGAAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCACTTTCTAGCAGACGCATTTTAAAAGCCTTGAGGGAAAGCTCAAAGAGGACAGTATCTGCTAGCGGTGGGCTCTGATACCATTAGATCCCACATTGGTTGGAGAGGTGTATGAAACGCTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTACAACCTTGACGGCAAGTCCGGAATTGAAGGCCCAAAAAAGACAATATCTGCTAACAGTGGGTTTGAGCTGTTATAAAAGATATCAGAGCCAGACATCGAGCGGTGTGCCACCAAGGATGTTGGGACCCAAGGGAGGTGGATTGTGAGATCCCACGTCGCGATTGGAGAGGAAAACAAACCATTCCTTATAAGGGTGTGGAAACCTCTCCTAGTATACCCGTTTTAAAACCTTGAGGGGAAGCTCTAAATGGAAAGCCCAAAAAAAACAATATCTGCTAACAGTGGGCTTGGGCTGTTACAAATGGTATTAGAGTCAGGCACCGAGAAGTGTGTTAACGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGAAAAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTTTAGCAAACGTGTTTTAAAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAGAACAATATTTGCTAGCGATGAGCTTGGGCCTACACTTATCAAACTTTTCATTCTCTAATTACCATTTTATAACCGTCTCTAAACTTTCAAAATGGTCTAGATACGAAACTTCTTTATCAAAATGGAATAAGTCAAAGTTCAAAGTCGGAGTTCGGGGCAAGAATGAAGATTAAACTTACGTCGTTTTGATGAAACAATGAAAATGCAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTGGCTTTAGTTTCTCTTTTTTCTTGAGACCACATACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAATTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATGAATAAAAGTAATTGAAACGAGAGATTTGTTTACAAAACGATGATCAGGACGGTTTAGAGAGCAATGCCACGTGCCGTGGTTATACCTTATTCCATCTATAGTCATTTAAGTTCGGGTTCTACAATGTCGTCTCATTTTAGTAGACGCATCTCTTCGTAACTTCATTCAATGGGTTTTAAACACTTAGAAAATCATTCTGACGAACAAACACGTAAGCACATAATCTATATGGTTGAACTATACTAGAAAGAATAAGTTAGGTGCGGTTGTGTAGTAGCTCAAGCCCACTGTTAGCAGATATTGTTCGCTTTGGCTCGTTACG

mRNA sequence

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTGGCTTTAGTTTCTCTTTTTTCTTGAGACCACATACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAATTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATGAATAAAAGTAATTGAAACGAGAGATTTGTTTACAAAACGATGATCAGGACGGTTTAGAGAGCAATGCCACGTGCCGTGGTTATACCTTATTCCATCTATAGTCATTTAAGTTCGGGTTCTACAATGTCGTCTCATTTTAGTAGACGCATCTCTTCGTAACTTCATTCAATGGGTTTTAAACACTTAGAAAATCATTCTGACGAACAAACACGTAAGCACATAATCTATATGGTTGAACTATACTAGAAAGAATAAGTTAGGTGCGGTTGTGTAGTAGCTCAAGCCCACTGTTAGCAGATATTGTTCGCTTTGGCTCGTTACG

Coding sequence (CDS)

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA

Protein sequence

MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETMLC

Homology

[Close]

BLAST of Carg24527-RA vs. NCBI nr
Match: XP_022963757.1 (transcription factor bHLH71-like [Cucurbita moschata])

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSP+LHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           DRK RPSE ESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]

BLAST of Carg24527-RA vs. NCBI nr
Match: XP_023554782.1 (transcription factor bHLH71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 123/162 (75.93%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSP+LHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 121

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RK RPSESESLRTASTRQG         VCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTASTRQGXXXXXXXXXVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]

BLAST of Carg24527-RA vs. NCBI nr
Match: XP_022967282.1 (transcription factor bHLH71-like [Cucurbita maxima])

HSP 1 Score: 193.0 bits (489), Expect = 8.2e-46
Identity = 107/162 (66.05%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTS + HDSSENTFFSDDTCSRHQDHQHG EG LKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSLVFHDSSENTFFSDDTCSRHQDHQHGFEGCLKP 121

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RK RPSESESLRTA TRQG                    RMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTAPTRQGXXXXXXXXXXXXXXXXXXXXRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]

BLAST of Carg24527-RA vs. NCBI nr
Match: PPD79360.1 (hypothetical protein GOBAR_DD23716 [Gossypium barbadense])

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 103/170 (60.59%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIP-----NTSPILHDSSENTFFSDDTCSRHQDHQHGLE 60
           M+L+ LSSN+  NFIIYDTI A P     + S +   S EN+F S +  S   +  + L 
Sbjct: 454 MALETLSSNELLNFIIYDTIFATPCSSHHHESLVTDFSMENSFSSLEQAS---NSGNALS 513

Query: 61  GSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQM 120
                  KCR    E  R+    QG+KKR+RKPRVCKNK EAETQRMTHIAVERNRRKQM
Sbjct: 514 CLPMVTPKCRSKGME--RSNLAVQGRKKRRRKPRVCKNKAEAETQRMTHIAVERNRRKQM 573

Query: 121 NEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEE-TMLC 165
           NEHL+VLRSLMPESYVQRVEEGCQL SV+DIA A H+M+RIIE+E T LC
Sbjct: 574 NEHLTVLRSLMPESYVQRVEEGCQLISVDDIAGAVHNMLRIIEQEATTLC 618

[Close]

BLAST of Carg24527-RA vs. NCBI nr
Match: XP_022931176.1 (transcription factor bHLH71-like [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 95/168 (56.55%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQD-HQHG-LEGSL 60
           MS+DALSSND FN IIYD IS  PNTS  + DSSE TFFSD+   +HQD HQHG LE   
Sbjct: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGICDSSETTFFSDEKGLKHQDNHQHGTLEHRP 60

Query: 61  KPD--RKCRPSESESLR--TASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQ 120
           KP+  RK  P+E+ES        +QGKKK     + CKNKEEAETQRMTHIAVERNRRK 
Sbjct: 61  KPNLARKRHPNEAESSNWGAVGLQQGKKKXXXXXKACKNKEEAETQRMTHIAVERNRRKL 120

Query: 121 MNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           M+EHLSVLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKL 168

[Close]

BLAST of Carg24527-RA vs. TAIR10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-14
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 89  RVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAA 148
           R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   +    +   
Sbjct: 102 RNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVK 161

Query: 149 AAHHMVRIIE 159
              H+++ +E
Sbjct: 162 ELEHILQSME 171

[Close]

BLAST of Carg24527-RA vs. TAIR10
Match: AT3G24140.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRII 157
           E+QRMTHIAVERNRRKQMNEHL VLRSLMP SYVQR ++   +    +       +++ +
Sbjct: 193 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCL 252

Query: 158 EEE 161
           E +
Sbjct: 253 ESQ 255

[Close]

BLAST of Carg24527-RA vs. TAIR10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEE 137
           E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++
Sbjct: 121 ENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQ 159

[Close]

BLAST of Carg24527-RA vs. TAIR10
Match: AT2G46810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 99  TQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 158
           +QRMTHIAVERNRR+QMN HL+ LRS++P SY+QR ++         I   A   V+I+E
Sbjct: 190 SQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQA-------SIVGGAIDFVKILE 244

Query: 159 EE 161
           ++
Sbjct: 250 QQ 244

[Close]

BLAST of Carg24527-RA vs. TAIR10
Match: AT3G61950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.4e-09
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 66  PSESESLRTASTRQGKKKRKRKPR-------------VCKNKEEAETQRMTHIAVERNRR 125
           PS + S  +A +R+ +K     P+               KN EE E QR+ HIAVERNRR
Sbjct: 129 PSSTSSPLSAHSRRKRKINHLLPQEMTREKRXXXXXXXSKNNEEIENQRINHIAVERNRR 188

Query: 126 KQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEE 160
           +QMNEH++ LR+L+P SY+QR ++         I   A + V+++E+
Sbjct: 189 RQMNEHINSLRALLPPSYIQRGDQA-------SIVGGAINYVKVLEQ 228

[Close]

BLAST of Carg24527-RA vs. Swiss-Prot
Match: sp|Q9SK91|BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 89  RVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAA 148
           R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   +    +   
Sbjct: 102 RNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVK 161

Query: 149 AAHHMVRIIE 159
              H+++ +E
Sbjct: 162 ELEHILQSME 171

[Close]

BLAST of Carg24527-RA vs. Swiss-Prot
Match: sp|Q56YJ8|FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRII 157
           E+QRMTHIAVERNRRKQMNEHL VLRSLMP SYVQR ++   +    +       +++ +
Sbjct: 193 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCL 252

Query: 158 EEE 161
           E +
Sbjct: 253 ESQ 255

[Close]

BLAST of Carg24527-RA vs. Swiss-Prot
Match: sp|Q9C7T4|BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEE 137
           E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++
Sbjct: 121 ENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQ 159

[Close]

BLAST of Carg24527-RA vs. Swiss-Prot
Match: sp|O81037|BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 99  TQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 158
           +QRMTHIAVERNRR+QMN HL+ LRS++P SY+QR ++         I   A   V+I+E
Sbjct: 190 SQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQA-------SIVGGAIDFVKILE 244

Query: 159 EE 161
           ++
Sbjct: 250 QQ 244

[Close]

BLAST of Carg24527-RA vs. Swiss-Prot
Match: sp|Q700E4|BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 66  PSESESLRTASTRQGKKKRKRKPR-------------VCKNKEEAETQRMTHIAVERNRR 125
           PS + S  +A +R+ +K     P+               KN EE E QR+ HIAVERNRR
Sbjct: 129 PSSTSSPLSAHSRRKRKINHLLPQEMTREKRXXXXXXXSKNNEEIENQRINHIAVERNRR 188

Query: 126 KQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEE 160
           +QMNEH++ LR+L+P SY+QR ++         I   A + V+++E+
Sbjct: 189 RQMNEHINSLRALLPPSYIQRGDQA-------SIVGGAINYVKVLEQ 228

[Close]

BLAST of Carg24527-RA vs. TrEMBL
Match: tr|A0A2P5QXS9|A0A2P5QXS9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23716 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 103/170 (60.59%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIP-----NTSPILHDSSENTFFSDDTCSRHQDHQHGLE 60
           M+L+ LSSN+  NFIIYDTI A P     + S +   S EN+F S +  S   +  + L 
Sbjct: 454 MALETLSSNELLNFIIYDTIFATPCSSHHHESLVTDFSMENSFSSLEQAS---NSGNALS 513

Query: 61  GSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQM 120
                  KCR    E  R+    QG+KKR+RKPRVCKNK EAETQRMTHIAVERNRRKQM
Sbjct: 514 CLPMVTPKCRSKGME--RSNLAVQGRKKRRRKPRVCKNKAEAETQRMTHIAVERNRRKQM 573

Query: 121 NEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEE-TMLC 165
           NEHL+VLRSLMPESYVQRVEEGCQL SV+DIA A H+M+RIIE+E T LC
Sbjct: 574 NEHLTVLRSLMPESYVQRVEEGCQLISVDDIAGAVHNMLRIIEQEATTLC 618

[Close]

BLAST of Carg24527-RA vs. TrEMBL
Match: tr|A0A2P4N539|A0A2P4N539_QUESU (Transcription factor bhlh96 OS=Quercus suber OX=58331 GN=CFP56_26231 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 88/165 (53.33%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHG-LEGSLK 60
           M+L+ALSS++ FNFIIYDTISA P      +D+ EN+F  ++  +  QDHQ   L+ S  
Sbjct: 1   MALEALSSSELFNFIIYDTISATP------YDNHENSFLLENGMTTPQDHQGSPLKNSSS 60

Query: 61  PDRKCRPSESESLRTASTR--QGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120
             RK  P  SES+        QG KKR+RKPRVCKNKEEAETQRMTHIAVERNRRKQMNE
Sbjct: 61  MTRKRHPGSSESVERKQNLGVQGIKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120

Query: 121 HLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           HL+VLRSLMPESYVQR ++   +    +      H+++ +E + +
Sbjct: 121 HLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEAQKL 159

[Close]

BLAST of Carg24527-RA vs. TrEMBL
Match: tr|A0A2I4DNU5|A0A2I4DNU5_9ROSI (transcription factor bHLH71-like OS=Juglans regia OX=51240 GN=LOC108982006 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 87/164 (53.05%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGS--L 60
           M+L+ALSSN+ FNFI+YDTISA P +S   HDSSE +F  ++     Q+    LE S  +
Sbjct: 1   MALEALSSNELFNFIVYDTISAAPYSS---HDSSETSFLLENAMP-PQNLGAILENSSLM 60

Query: 61  KPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120
              R C  S+    R     QG+KKR+RKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH
Sbjct: 61  TQKRHCGRSQVVERRQNLAVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120

Query: 121 LSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           LSVLRSLMPESY QR ++   +    +      H+++ +E + +
Sbjct: 121 LSVLRSLMPESYAQRGDQASIVGGAIEFVKELEHLLQSLEAQKL 160

[Close]

BLAST of Carg24527-RA vs. TrEMBL
Match: tr|A0A2N9GA13|A0A2N9GA13_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24294 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 86/169 (50.89%), Postives = 107/169 (63.31%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           M+L+ALSSND FNFIIYDTISA P +S   H    +    ++   +  DHQ G+  +   
Sbjct: 1   MALEALSSNDLFNFIIYDTISATPYSS---HAHESSFLLENEMKPQDDDHQDGILKNPSL 60

Query: 61  DRKCRPSESESLRTASTR-------QGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRK 120
             K R S   S   A          QG+KKR+RKPRVCKNKEEAETQRMTHIAVERNRRK
Sbjct: 61  MTKKRHSACSSSEVADDNKKQNLGVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRK 120

Query: 121 QMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           QMNEHLSVLRSLMPESYVQR ++   +    +      H+++ +E + +
Sbjct: 121 QMNEHLSVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKL 166

[Close]

BLAST of Carg24527-RA vs. TrEMBL
Match: tr|V7CGC6|V7CGC6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G284500g PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           M+L+ L SN+F NF++YDTISA P +S   HDSSE +F   ++   +Q+H   L+     
Sbjct: 27  MALETLPSNEFSNFMVYDTISATPFSS---HDSSEASFL--ESFGNYQEHDPSLDNCSMR 86

Query: 61  DRKCRPSESESL---RTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120
            RK + SE E +   +     QG+KKR+RKPRVCKNKEEAETQR+THI VERNRRKQMNE
Sbjct: 87  TRKRQASEPEGIDRKQNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNE 146

Query: 121 HLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 159
           HL+VLRSLMPESYVQR ++   +    +      H+++ +E
Sbjct: 147 HLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLE 182

The following BLAST results are available for this feature:

BLAST of Carg24527-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963757.1	1.9e-63	81.48	transcription factor bHLH71-like [Cucurbita moschata]	[more]
XP_023554782.1	4.6e-57	75.93	transcription factor bHLH71-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967282.1	8.2e-46	66.05	transcription factor bHLH71-like [Cucurbita maxima]	[more]
PPD79360.1	1.0e-35	60.59	hypothetical protein GOBAR_DD23716 [Gossypium barbadense]	[more]
XP_022931176.1	3.6e-33	56.55	transcription factor bHLH71-like [Cucurbita moschata]	[more]

BLAST of Carg24527-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22490.1	3.4e-14	57.14	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G24140.1	2.1e-11	53.97	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G72210.1	2.0e-09	76.92	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G46810.1	4.4e-09	50.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G61950.1	7.4e-09	37.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg24527-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SK91\|BH094_ARATH	6.2e-13	57.14	Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2	[more]
sp\|Q56YJ8\|FAMA_ARATH	3.8e-10	53.97	Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1	[more]
sp\|Q9C7T4\|BH096_ARATH	3.5e-08	76.92	Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1	[more]
sp\|O81037\|BH070_ARATH	7.9e-08	50.00	Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1	[more]
sp\|Q700E4\|BH067_ARATH	1.3e-07	37.38	Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1	[more]

BLAST of Carg24527-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5QXS9\|A0A2P5QXS9_GOSBA	6.6e-36	60.59	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23716 PE=4 SV...	[more]
tr\|A0A2P4N539\|A0A2P4N539_QUESU	4.9e-31	53.33	Transcription factor bhlh96 OS=Quercus suber OX=58331 GN=CFP56_26231 PE=4 SV=1	[more]
tr\|A0A2I4DNU5\|A0A2I4DNU5_9ROSI	3.5e-29	53.05	transcription factor bHLH71-like OS=Juglans regia OX=51240 GN=LOC108982006 PE=4 ...	[more]
tr\|A0A2N9GA13\|A0A2N9GA13_FAGSY	6.0e-29	50.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24294 PE=4 SV=1	[more]
tr\|V7CGC6\|V7CGC6_PHAVU	1.3e-28	50.93	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G284500g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24527	Carg24527	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24527-RA.three_prime_UTR.1	Carg24527-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24527-RA.CDS.2	Carg24527-RA.CDS.2	CDS
Carg24527-RA.CDS.1	Carg24527-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24527-RA.exon.2	Carg24527-RA.exon.2	exon
Carg24527-RA.exon.1	Carg24527-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24527-RA	Carg24527-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 100..129 e-value: 4.9E-8 score: 32.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 99..157 score: 10.829
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 98..133 e-value: 4.88585E-7 score: 42.9715
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 90..163 e-value: 2.9E-7 score: 32.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 92..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..69
None	No IPR available	PANTHER	PTHR11969	MAX DIMERIZATION, MAD	coord: 3..133
None	No IPR available	PANTHER	PTHR11969	MAX DIMERIZATION, MAD	coord: 133..164
None	No IPR available	PANTHER	PTHR11969:SF31	TRANSCRIPTION FACTOR BHLH71	coord: 3..133 coord: 133..164