Carg24527 (gene) Silver-seed gourd

Overview
NameCarg24527
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription factor
LocationCucurbita_argyrosperma_scaffold_121 : 372952 .. 375917 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTTGTTTTCTTCTATTTGTCTCTTTCATTACTAAAATTTGGGACCCCATTTCTGAGATTTGATTAAACTTCATAATTATGCCATTAAAACTCCTACCCACCTTCTTCTTTTGCTCATATCTTCGTTACTAATCTCAATTATTTAGCCTAAACATAGAATTCAATTATTACTGCTAAAAATTGACCTCTGCTCCTAACCCTATTCATAATTGCATGGCTTGGCTACATTTTTGTTCAAGAACTTCAAAAAATGACAGATTCATAGGAAGCAGAGTTTGTAAGGCCCTAAAATATGATACGTACCTTTTTGATAGCAATCTTTCATGAACTGATATCAGTTTTATGTGATGAACATATGAAGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACTTCCAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTTTGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTAAGTCTTACTGATTTTCATCCATTGGTTCTTTACTCCATCAGCCTCAAGGTACTTACTTACCTAATGTTTCGAACTTTGTTGTGAGATCCTACGTTGGTTGAAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCACTTTCTAGCAGACGCATTTTAAAAGCCTTGAGGGAAAGCTCAAAGAGGACAGTATCTGCTAGCGGTGGGCTCTGATACCATTAGATCCCACATTGGTTGGAGAGGTGTATGAAACGCTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTACAACCTTGACGGCAAGTCCGGAATTGAAGGCCCAAAAAAGACAATATCTGCTAACAGTGGGTTTGAGCTGTTATAAAAGATATCAGAGCCAGACATCGAGCGGTGTGCCACCAAGGATGTTGGGACCCAAGGGAGGTGGATTGTGAGATCCCACGTCGCGATTGGAGAGGAAAACAAACCATTCCTTATAAGGGTGTGGAAACCTCTCCTAGTATACCCGTTTTAAAACCTTGAGGGGAAGCTCTAAATGGAAAGCCCAAAAAAAACAATATCTGCTAACAGTGGGCTTGGGCTGTTACAAATGGTATTAGAGTCAGGCACCGAGAAGTGTGTTAACGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGAAAAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTTTAGCAAACGTGTTTTAAAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAGAACAATATTTGCTAGCGATGAGCTTGGGCCTACACTTATCAAACTTTTCATTCTCTAATTACCATTTTATAACCGTCTCTAAACTTTCAAAATGGTCTAGATACGAAACTTCTTTATCAAAATGGAATAAGTCAAAGTTCAAAGTCGGAGTTCGGGGCAAGAATGAAGATTAAACTTACGTCGTTTTGATGAAACAATGAAAATGCAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTGGCTTTAGTTTCTCTTTTTTCTTGAGACCACATACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAATTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATGAATAAAAGTAATTGAAACGAGAGATTTGTTTACAAAACGATGATCAGGACGGTTTAGAGAGCAATGCCACGTGCCGTGGTTATACCTTATTCCATCTATAGTCATTTAAGTTCGGGTTCTACAATGTCGTCTCATTTTAGTAGACGCATCTCTTCGTAACTTCATTCAATGGGTTTTAAACACTTAGAAAATCATTCTGACGAACAAACACGTAAGCACATAATCTATATGGTTGAACTATACTAGAAAGAATAAGTTAGGTGCGGTTGTGTAGTAGCTCAAGCCCACTGTTAGCAGATATTGTTCGCTTTGGCTCGTTACG

mRNA sequence

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAAAATGTAAACAATTCAAAAGCCAAAACAAAGAAAAAGAAGAGGTAAGAGCATTGAAATGGAATCAGCCATTAAAATGCCAAGTTCACTGTGTGTGCATGTGGCTTGGTTTGATGTAATTAGTAAATGAATGTGTTTTTATGTAAGATGATATTGTTTTGTAGCTTTCAAGGGTTTGTCTTATTGGCTTTAGTTTCTCTTTTTTCTTGAGACCACATACAAGAAGAGAGTGACAGATGAGAAGAAAAAGTTGTCGAAGGGATTGGTTTTGGGTTCATCATTATCTTCCTGTGCAATTTCCTCTCCCTTCCCTTCCCCTTTTCATACCTCCTTTCATCATCCAAATTTAGTTAGGGTTCTTGATGACCCACAATGCCAAATAGTGAGTAAATTTCTTTTTGGGAAGGTAAGAAGTCAATGTCCAAGATGAATAAAAGTAATTGAAACGAGAGATTTGTTTACAAAACGATGATCAGGACGGTTTAGAGAGCAATGCCACGTGCCGTGGTTATACCTTATTCCATCTATAGTCATTTAAGTTCGGGTTCTACAATGTCGTCTCATTTTAGTAGACGCATCTCTTCGTAACTTCATTCAATGGGTTTTAAACACTTAGAAAATCATTCTGACGAACAAACACGTAAGCACATAATCTATATGGTTGAACTATACTAGAAAGAATAAGTTAGGTGCGGTTGTGTAGTAGCTCAAGCCCACTGTTAGCAGATATTGTTCGCTTTGGCTCGTTACG

Coding sequence (CDS)

ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCAATCCCCAACACCTCCCCCATCCTCCACGACTCGTCGGAGAACACATTTTTCTCCGACGACACGTGTTCGAGACATCAAGATCACCAACATGGGCTTGAAGGAAGCTTGAAACCCGATAGAAAATGCCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGTCGACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGTTGAAGAAGGATGCCAACTGAGATCAGTAGAAGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA

Protein sequence

MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETMLC
Homology
[Close]
BLAST of Carg24527 vs. NCBI nr
Match: XP_022963757.1 (transcription factor bHLH71-like [Cucurbita moschata])

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSP+LHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           DRK RPSE ESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 61  DRKRRPSELESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 162

[Close]
BLAST of Carg24527 vs. NCBI nr
Match: XP_023554782.1 (transcription factor bHLH71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-57
Identity = 123/162 (75.93%), Postives = 134/162 (82.72%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTSP+LHDSSENTFFSDDTCSRHQDHQHGLEGSLKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSPVLHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 121

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RK RPSESESLRTASTRQG         VCKNKEEAETQRMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTASTRQGXXXXXXXXXVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]
BLAST of Carg24527 vs. NCBI nr
Match: XP_022967282.1 (transcription factor bHLH71-like [Cucurbita maxima])

HSP 1 Score: 193.0 bits (489), Expect = 8.2e-46
Identity = 107/162 (66.05%), Postives = 118/162 (72.84%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           MSLDALSSNDFFNFIIYDTISAIPNTS + HDSSENTFFSDDTCSRHQDHQHG EG LKP
Sbjct: 62  MSLDALSSNDFFNFIIYDTISAIPNTSLVFHDSSENTFFSDDTCSRHQDHQHGFEGCLKP 121

Query: 61  DRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEHLS 120
           +RK RPSESESLRTA TRQG                    RMTHIAVERNRRKQMNEHLS
Sbjct: 122 NRKRRPSESESLRTAPTRQGXXXXXXXXXXXXXXXXXXXXRMTHIAVERNRRKQMNEHLS 181

Query: 121 VLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           VLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 182 VLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKL 223

[Close]
BLAST of Carg24527 vs. NCBI nr
Match: PPD79360.1 (hypothetical protein GOBAR_DD23716 [Gossypium barbadense])

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 103/170 (60.59%), Postives = 120/170 (70.59%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIP-----NTSPILHDSSENTFFSDDTCSRHQDHQHGLE 60
           M+L+ LSSN+  NFIIYDTI A P     + S +   S EN+F S +  S   +  + L 
Sbjct: 454 MALETLSSNELLNFIIYDTIFATPCSSHHHESLVTDFSMENSFSSLEQAS---NSGNALS 513

Query: 61  GSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQM 120
                  KCR    E  R+    QG+KKR+RKPRVCKNK EAETQRMTHIAVERNRRKQM
Sbjct: 514 CLPMVTPKCRSKGME--RSNLAVQGRKKRRRKPRVCKNKAEAETQRMTHIAVERNRRKQM 573

Query: 121 NEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEE-TMLC 165
           NEHL+VLRSLMPESYVQRVEEGCQL SV+DIA A H+M+RIIE+E T LC
Sbjct: 574 NEHLTVLRSLMPESYVQRVEEGCQLISVDDIAGAVHNMLRIIEQEATTLC 618

[Close]
BLAST of Carg24527 vs. NCBI nr
Match: XP_022931176.1 (transcription factor bHLH71-like [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 95/168 (56.55%), Postives = 114/168 (67.86%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQD-HQHG-LEGSL 60
           MS+DALSSND FN IIYD IS  PNTS  + DSSE TFFSD+   +HQD HQHG LE   
Sbjct: 1   MSIDALSSNDLFNLIIYDAISPTPNTSHGICDSSETTFFSDEKGLKHQDNHQHGTLEHRP 60

Query: 61  KPD--RKCRPSESESLR--TASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQ 120
           KP+  RK  P+E+ES        +QGKKK     + CKNKEEAETQRMTHIAVERNRRK 
Sbjct: 61  KPNLARKRHPNEAESSNWGAVGLQQGKKKXXXXXKACKNKEEAETQRMTHIAVERNRRKL 120

Query: 121 MNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           M+EHLSVLRSLMPESYVQR ++   +    +      H++  +E + +
Sbjct: 121 MSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKL 168

[Close]
BLAST of Carg24527 vs. TAIR10
Match: AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-14
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 89  RVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAA 148
           R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   +    +   
Sbjct: 102 RNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVK 161

Query: 149 AAHHMVRIIE 159
              H+++ +E
Sbjct: 162 ELEHILQSME 171

[Close]
BLAST of Carg24527 vs. TAIR10
Match: AT3G24140.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRII 157
           E+QRMTHIAVERNRRKQMNEHL VLRSLMP SYVQR ++   +    +       +++ +
Sbjct: 193 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCL 252

Query: 158 EEE 161
           E +
Sbjct: 253 ESQ 255

[Close]
BLAST of Carg24527 vs. TAIR10
Match: AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEE 137
           E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++
Sbjct: 121 ENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQ 159

[Close]
BLAST of Carg24527 vs. TAIR10
Match: AT2G46810.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 99  TQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 158
           +QRMTHIAVERNRR+QMN HL+ LRS++P SY+QR ++         I   A   V+I+E
Sbjct: 190 SQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQA-------SIVGGAIDFVKILE 244

Query: 159 EE 161
           ++
Sbjct: 250 QQ 244

[Close]
BLAST of Carg24527 vs. TAIR10
Match: AT3G61950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.4e-09
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0 

Query: 66  PSESESLRTASTRQGKKKRKRKPR-------------VCKNKEEAETQRMTHIAVERNRR 125
           PS + S  +A +R+ +K     P+               KN EE E QR+ HIAVERNRR
Sbjct: 129 PSSTSSPLSAHSRRKRKINHLLPQEMTREKRXXXXXXXSKNNEEIENQRINHIAVERNRR 188

Query: 126 KQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEE 160
           +QMNEH++ LR+L+P SY+QR ++         I   A + V+++E+
Sbjct: 189 RQMNEHINSLRALLPPSYIQRGDQA-------SIVGGAINYVKVLEQ 228

[Close]
BLAST of Carg24527 vs. Swiss-Prot
Match: sp|Q9SK91|BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 89  RVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAA 148
           R CKNKEE E QRMTHIAVERNRRKQMNE+L+VLRSLMP SY QR ++   +    +   
Sbjct: 102 RNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVK 161

Query: 149 AAHHMVRIIE 159
              H+++ +E
Sbjct: 162 ELEHILQSME 171

[Close]
BLAST of Carg24527 vs. Swiss-Prot
Match: sp|Q56YJ8|FAMA_ARATH (Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRII 157
           E+QRMTHIAVERNRRKQMNEHL VLRSLMP SYVQR ++   +    +       +++ +
Sbjct: 193 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCL 252

Query: 158 EEE 161
           E +
Sbjct: 253 ESQ 255

[Close]
BLAST of Carg24527 vs. Swiss-Prot
Match: sp|Q9C7T4|BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 98  ETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEE 137
           E QRMTHIAVERNRRKQMNE+L+VLRSLMP  Y QR ++
Sbjct: 121 ENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQ 159

[Close]
BLAST of Carg24527 vs. Swiss-Prot
Match: sp|O81037|BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 99  TQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 158
           +QRMTHIAVERNRR+QMN HL+ LRS++P SY+QR ++         I   A   V+I+E
Sbjct: 190 SQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQA-------SIVGGAIDFVKILE 244

Query: 159 EE 161
           ++
Sbjct: 250 QQ 244

[Close]
BLAST of Carg24527 vs. Swiss-Prot
Match: sp|Q700E4|BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0 

Query: 66  PSESESLRTASTRQGKKKRKRKPR-------------VCKNKEEAETQRMTHIAVERNRR 125
           PS + S  +A +R+ +K     P+               KN EE E QR+ HIAVERNRR
Sbjct: 129 PSSTSSPLSAHSRRKRKINHLLPQEMTREKRXXXXXXXSKNNEEIENQRINHIAVERNRR 188

Query: 126 KQMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEE 160
           +QMNEH++ LR+L+P SY+QR ++         I   A + V+++E+
Sbjct: 189 RQMNEHINSLRALLPPSYIQRGDQA-------SIVGGAINYVKVLEQ 228

[Close]
BLAST of Carg24527 vs. TrEMBL
Match: tr|A0A2P5QXS9|A0A2P5QXS9_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23716 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 103/170 (60.59%), Postives = 120/170 (70.59%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIP-----NTSPILHDSSENTFFSDDTCSRHQDHQHGLE 60
           M+L+ LSSN+  NFIIYDTI A P     + S +   S EN+F S +  S   +  + L 
Sbjct: 454 MALETLSSNELLNFIIYDTIFATPCSSHHHESLVTDFSMENSFSSLEQAS---NSGNALS 513

Query: 61  GSLKPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQM 120
                  KCR    E  R+    QG+KKR+RKPRVCKNK EAETQRMTHIAVERNRRKQM
Sbjct: 514 CLPMVTPKCRSKGME--RSNLAVQGRKKRRRKPRVCKNKAEAETQRMTHIAVERNRRKQM 573

Query: 121 NEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEE-TMLC 165
           NEHL+VLRSLMPESYVQRVEEGCQL SV+DIA A H+M+RIIE+E T LC
Sbjct: 574 NEHLTVLRSLMPESYVQRVEEGCQLISVDDIAGAVHNMLRIIEQEATTLC 618

[Close]
BLAST of Carg24527 vs. TrEMBL
Match: tr|A0A2P4N539|A0A2P4N539_QUESU (Transcription factor bhlh96 OS=Quercus suber OX=58331 GN=CFP56_26231 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 88/165 (53.33%), Postives = 112/165 (67.88%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHG-LEGSLK 60
           M+L+ALSS++ FNFIIYDTISA P      +D+ EN+F  ++  +  QDHQ   L+ S  
Sbjct: 1   MALEALSSSELFNFIIYDTISATP------YDNHENSFLLENGMTTPQDHQGSPLKNSSS 60

Query: 61  PDRKCRPSESESLRTASTR--QGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120
             RK  P  SES+        QG KKR+RKPRVCKNKEEAETQRMTHIAVERNRRKQMNE
Sbjct: 61  MTRKRHPGSSESVERKQNLGVQGIKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120

Query: 121 HLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           HL+VLRSLMPESYVQR ++   +    +      H+++ +E + +
Sbjct: 121 HLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEAQKL 159

[Close]
BLAST of Carg24527 vs. TrEMBL
Match: tr|A0A2I4DNU5|A0A2I4DNU5_9ROSI (transcription factor bHLH71-like OS=Juglans regia OX=51240 GN=LOC108982006 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 87/164 (53.05%), Postives = 110/164 (67.07%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGS--L 60
           M+L+ALSSN+ FNFI+YDTISA P +S   HDSSE +F  ++     Q+    LE S  +
Sbjct: 1   MALEALSSNELFNFIVYDTISAAPYSS---HDSSETSFLLENAMP-PQNLGAILENSSLM 60

Query: 61  KPDRKCRPSESESLRTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120
              R C  S+    R     QG+KKR+RKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH
Sbjct: 61  TQKRHCGRSQVVERRQNLAVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRKQMNEH 120

Query: 121 LSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           LSVLRSLMPESY QR ++   +    +      H+++ +E + +
Sbjct: 121 LSVLRSLMPESYAQRGDQASIVGGAIEFVKELEHLLQSLEAQKL 160

[Close]
BLAST of Carg24527 vs. TrEMBL
Match: tr|A0A2N9GA13|A0A2N9GA13_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24294 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.0e-29
Identity = 86/169 (50.89%), Postives = 107/169 (63.31%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           M+L+ALSSND FNFIIYDTISA P +S   H    +    ++   +  DHQ G+  +   
Sbjct: 1   MALEALSSNDLFNFIIYDTISATPYSS---HAHESSFLLENEMKPQDDDHQDGILKNPSL 60

Query: 61  DRKCRPSESESLRTASTR-------QGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRK 120
             K R S   S   A          QG+KKR+RKPRVCKNKEEAETQRMTHIAVERNRRK
Sbjct: 61  MTKKRHSACSSSEVADDNKKQNLGVQGRKKRRRKPRVCKNKEEAETQRMTHIAVERNRRK 120

Query: 121 QMNEHLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIEEETM 163
           QMNEHLSVLRSLMPESYVQR ++   +    +      H+++ +E + +
Sbjct: 121 QMNEHLSVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEAQKL 166

[Close]
BLAST of Carg24527 vs. TrEMBL
Match: tr|V7CGC6|V7CGC6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G284500g PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 82/161 (50.93%), Postives = 109/161 (67.70%), Query Frame = 0 

Query: 1   MSLDALSSNDFFNFIIYDTISAIPNTSPILHDSSENTFFSDDTCSRHQDHQHGLEGSLKP 60
           M+L+ L SN+F NF++YDTISA P +S   HDSSE +F   ++   +Q+H   L+     
Sbjct: 27  MALETLPSNEFSNFMVYDTISATPFSS---HDSSEASFL--ESFGNYQEHDPSLDNCSMR 86

Query: 61  DRKCRPSESESL---RTASTRQGKKKRKRKPRVCKNKEEAETQRMTHIAVERNRRKQMNE 120
            RK + SE E +   +     QG+KKR+RKPRVCKNKEEAETQR+THI VERNRRKQMNE
Sbjct: 87  TRKRQASEPEGIDRKQNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNE 146

Query: 121 HLSVLRSLMPESYVQRVEEGCQLRSVEDIAAAAHHMVRIIE 159
           HL+VLRSLMPESYVQR ++   +    +      H+++ +E
Sbjct: 147 HLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLE 182

The following BLAST results are available for this feature:
BLAST of Carg24527 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963757.11.9e-6381.48transcription factor bHLH71-like [Cucurbita moschata][more]
XP_023554782.14.6e-5775.93transcription factor bHLH71-like [Cucurbita pepo subsp. pepo][more]
XP_022967282.18.2e-4666.05transcription factor bHLH71-like [Cucurbita maxima][more]
PPD79360.11.0e-3560.59hypothetical protein GOBAR_DD23716 [Gossypium barbadense][more]
XP_022931176.13.6e-3356.55transcription factor bHLH71-like [Cucurbita moschata][more]
BLAST of Carg24527 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22490.13.4e-1457.14basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G24140.12.1e-1153.97basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G72210.12.0e-0976.92basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G46810.14.4e-0950.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G61950.17.4e-0937.38basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Carg24527 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SK91|BH094_ARATH6.2e-1357.14Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2[more]
sp|Q56YJ8|FAMA_ARATH3.8e-1053.97Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1[more]
sp|Q9C7T4|BH096_ARATH3.5e-0876.92Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1[more]
sp|O81037|BH070_ARATH7.9e-0850.00Transcription factor bHLH70 OS=Arabidopsis thaliana OX=3702 GN=BHLH70 PE=2 SV=1[more]
sp|Q700E4|BH067_ARATH1.3e-0737.38Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1[more]
BLAST of Carg24527 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5QXS9|A0A2P5QXS9_GOSBA6.6e-3660.59Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23716 PE=4 SV... [more]
tr|A0A2P4N539|A0A2P4N539_QUESU4.9e-3153.33Transcription factor bhlh96 OS=Quercus suber OX=58331 GN=CFP56_26231 PE=4 SV=1[more]
tr|A0A2I4DNU5|A0A2I4DNU5_9ROSI3.5e-2953.05transcription factor bHLH71-like OS=Juglans regia OX=51240 GN=LOC108982006 PE=4 ... [more]
tr|A0A2N9GA13|A0A2N9GA13_FAGSY6.0e-2950.89Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24294 PE=4 SV=1[more]
tr|V7CGC6|V7CGC6_PHAVU1.3e-2850.93Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G284500g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24527-RACarg24527-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 100..129
e-value: 4.9E-8
score: 32.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 99..157
score: 10.829
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 98..133
e-value: 4.88585E-7
score: 42.9715
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 90..163
e-value: 2.9E-7
score: 32.3
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 92..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..69
NoneNo IPR availablePANTHERPTHR11969MAX DIMERIZATION, MADcoord: 3..133
NoneNo IPR availablePANTHERPTHR11969MAX DIMERIZATION, MADcoord: 133..164
NoneNo IPR availablePANTHERPTHR11969:SF31TRANSCRIPTION FACTOR BHLH71coord: 3..133
coord: 133..164

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24527Csa3G901180Cucumber (Chinese Long) v2carcuB0983
Carg24527MELO3C003421Melon (DHL92) v3.5.1carmeB0949
Carg24527CSPI03G46590Wild cucumber (PI 183967)carcpiB1006
Carg24527Cucsa.313010Cucumber (Gy14) v1carcgyB1087
Carg24527CmaCh19G002300Cucurbita maxima (Rimu)carcmaB1339
Carg24527CmaCh02G016180Cucurbita maxima (Rimu)carcmaB1340
Carg24527CmoCh02G016630Cucurbita moschata (Rifu)carcmoB1302
Carg24527CmoCh19G002450Cucurbita moschata (Rifu)carcmoB1301
Carg24527LsiUNG000300Bottle gourd (USVL1VR-Ls)carlsiB887
Carg24527Cp4.1LG15g02040Cucurbita pepo (Zucchini)carcpeB1344
Carg24527CsGy3G044040Cucumber (Gy14) v2carcgybB0956
Carg24527MELO3C003421.2Melon (DHL92) v3.6.1carmedB0955
Carg24527CsaV3_3G049050Cucumber (Chinese Long) v3carcucB1011
Carg24527Bhi05G000317Wax gourdcarwgoB1139
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24527Carg08845Silver-seed gourdcarcarB612
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24527Silver-seed gourdcarcarB487
Carg24527Cucumber (Gy14) v2carcgybB0957
Carg24527Cucumber (Gy14) v1carcgyB1088
Carg24527Cucurbita maxima (Rimu)carcmaB1338
Carg24527Cucurbita moschata (Rifu)carcmoB1300
Carg24527Cucurbita pepo (Zucchini)carcpeB1343
Carg24527Cucurbita pepo (Zucchini)carcpeB1346
Carg24527Wild cucumber (PI 183967)carcpiB1007
Carg24527Cucumber (Chinese Long) v2carcuB0984
Carg24527Cucumber (Chinese Long) v3carcucB1012
Carg24527Bottle gourd (USVL1VR-Ls)carlsiB889
Carg24527Melon (DHL92) v3.5.1carmeB0950
Carg24527Melon (DHL92) v3.6.1carmedB0956
Carg24527Watermelon (Charleston Gray)carwcgB0948
Carg24527Watermelon (Charleston Gray)carwcgB0949
Carg24527Watermelon (97103) v1carwmB0974
Carg24527Watermelon (97103) v1carwmB0976
Carg24527Watermelon (97103) v2carwmbB1023
Carg24527Watermelon (97103) v2carwmbB1025