Carg24269-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCTTCTACTTCTCGATCAGTCCTTTCTTTCTTGTAAAGTCAGAATCCGAACGGTGAATACCAGATCGGTAGAAGAAGGGACTGCACAAGTCATAACGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGGCCCAACAAGCTGCTACATTTGGAACTGAGCCCACGTCATACGGCCCAACTGCATCTTCTGGGCTCAGCGCTATGTCCGGCCCAACAAGCTGCTACATTTTGGAACTGAGCCCAAGTCATTCGGCCCAACTGGATTTTCTGGACTCAGCGCCATGTCCGGCCCAATGATCTGCTACTTTCGGAACTGAGCCCAATTTTACGGCCCAATAAGCTGCTACATTTGGAACTGAGCCCAAGTCATATGGCCCATTAATATTGACGTCAATGGACCATTAATATTGACGTAAACGGCCCATTAATATTGACGTCAACTGCACATTAATATTGACGTCAACGGCCCATTAATATTGACGTCTTCGGCCCATTCCATTATATTAAAGTCAACGGCCCATCCCAATTAGTCAAAGGCCCATTTAAATTGACAACAACGGCCCATTATTATTACGTCAACGGCTCATTATTATTGACTTCAACGCCCCATTAATATTGACGTCTAATGGCCGATTAATATTGACGTCAACGGCCCATTGAATTGATTGACGTCAAAGGCCCATTAATTTGACGTCTTCGGCCCATCCATTAATATTGACGTCATAGGCCCATCCCATTTATATTGCATCAATGGCCCATTAATATTGACGTCGATAATCCATTAACATCAATGGCCCATTCGAAAGAAACCGGCGGCATTTCCTGTGTACTATACAGTTTATCTCTTATTTTGTTTCCCAAGTTTCACATGGAGGATTCTGAAGAACTTTGACAGAGCATCAGCTTAACCAAGCTACACAGACATGGCCTCGCCAGCCAAACAAGACCAGCGAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCGCTAAGCACATCCTCACTTGATTGCATTGATCAACGAGAAACTAATCATTTTTGTAATTATCGTCATTCTGTAATTGGATTGTACTATGAAGTTCCTCACAATGTAACTATCAGCAACTTTCTTGCTATACGAGTCTGCAGCAATTTTCCTTTTCTCCTCAAAATATCTTTCACAAGTTTTGTAAATACGTTTTGTTAGCAGTTTCTGTAGCTATGTAGATCATGCTTTCCTTTTTGAGCCAAATTTTGCTGGATATAGCTTAATTCTTTGCATCTTCTTCGATTTTGTAGCCTCCAGAAAAAGGGTGGCTGTTGTTGGCGCTGGTGTCAGGTGTGTATGTTGTTATCTCCCATATCCTACTTTTTTCTAGCTTCTGCTTATGGGGCGGTGTTCTTACTGATGAGGCACTGAAATAAAGTTTATGTACTAATTTTTGAGTTGGGTAATGATAGTTCGATAATTTAATTGCATTTATGTTTATGAAGATTTAGTTTGATGGAAGTTTATAATGTTGTCTATTTGTCTTTGTTTGGTTTTTTTAAATCAGTATTTTTCACTTAAAATACTGGCTCTGGTTTTTAGTTATGGCTTCAAATTCAAATGTAATTTTCTTTCATCTGGCCAGTACTTTTGTGGGTGAAAAGAAAATCGGTCTATACATGAGTACTGATGCATGAATTGAGAGAAGTAATGCACCACTGGAGACTGTGAGAAACCATTCAATGGATTATCCCGCAGGGACCTAAGTGTTGACTCGGAAAGTCAAAGCTGAAATCCTTTAGAATTGTGGGACGAGATGGAGAAATAGTTGATCATCTCTTCATTAGCGTTCTTTCCTTTTACAGTTGAAGGGTGGCTCTTTATTTTGATCTCTTTTGACTTGTCTCTTTGCTTACCAAAACGTATTGATGAGTGGCTGCTTGAAGCGCTCACAGGAGGTGGTTCAAAGACAAAGCTAAAATCCTTTAGAATTGTGCAATTAGATCCTTTGCTATGACATATCTGAATCCGCATAAACCAAAGAAATTTTAGGAATAGAGAGGTTCTGGAATGAGATGGAATATCAATGCTTCAAAAAATTCCTGAAAGCTCTCACGTGATTCCATTGTTTTGTTCTTTTTCAATAATATTGTTTCTCAGTAATTTGATCATTTCTTTGTCCTGCGTAAACTCAGTATCCTCCAGTGAGGCTGACTTTGATTTTGTGTGTATCATGGTTAAGTGGGCTCGCTGCAGCCTACAAATTGAAATCGCATGGCTTCAATGTTACGGTGCTTGAAGCGGATGGAAGAGCTGGAGGAAAGCTAAGAAGCGTCTCATACAATGGACTTATCTGGGATGAAGGAGCCAATACAATGGCAAGCTTCCTTGAAAATAATTTGACTAGCATTTTTCTTCACTAG ATGAAGCTTCTACTTCTCGATCAGTCCTTTCTTTCTTGTAAAGTCAGAATCCGAACGGTGAATACCAGATCGGTAGAAGAAGGGACTGCACAAGTCATAACGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGGCCCAACAAGCTGCTACATTTGGAACTGAGCCCACGTCATACGGCCCAACTGCATCTTCTGGGCTCAGCGCTATGTCCGGCCCAACAAGCTGCTACATTTTGGAACTGAGCCCAAGTCATTCGGCCCAACTGGATTTTCTGGACTCAGCGCCATCCTCCAGAAAAAGGGTGGCTGTTGTTGGCGCTGGTGTCAGTGGGCTCGCTGCAGCCTACAAATTGAAATCGCATGGCTTCAATGTTACGGTGCTTGAAGCGGATGGAAGAGCTGGAGGAAAGCTAAGAAGCGTCTCATACAATGGACTTATCTGGGATGAAGGAGCCAATACAATGGCAAGCTTCCTTGAAAATAATTTGACTAGCATTTTTCTTCACTAG ATGAAGCTTCTACTTCTCGATCAGTCCTTTCTTTCTTGTAAAGTCAGAATCCGAACGGTGAATACCAGATCGGTAGAAGAAGGGACTGCACAAGTCATAACGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGGCCCAACAAGCTGCTACATTTGGAACTGAGCCCACGTCATACGGCCCAACTGCATCTTCTGGGCTCAGCGCTATGTCCGGCCCAACAAGCTGCTACATTTTGGAACTGAGCCCAAGTCATTCGGCCCAACTGGATTTTCTGGACTCAGCGCCATCCTCCAGAAAAAGGGTGGCTGTTGTTGGCGCTGGTGTCAGTGGGCTCGCTGCAGCCTACAAATTGAAATCGCATGGCTTCAATGTTACGGTGCTTGAAGCGGATGGAAGAGCTGGAGGAAAGCTAAGAAGCGTCTCATACAATGGACTTATCTGGGATGAAGGAGCCAATACAATGGCAAGCTTCCTTGAAAATAATTTGACTAGCATTTTTCTTCACTAG MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSAQLDFLDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIFLH
BLAST of Carg24269-RA vs. NCBI nr
Match: XP_023551401.1 (protoporphyrinogen oxidase, chloroplastic/mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23 Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0
BLAST of Carg24269-RA vs. NCBI nr
Match: XP_022992609.1 (protoporphyrinogen oxidase 2, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0
BLAST of Carg24269-RA vs. NCBI nr
Match: XP_022938651.1 (protoporphyrinogen oxidase 2, chloroplastic/mitochondrial isoform X7 [Cucurbita moschata]) HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23 Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0
BLAST of Carg24269-RA vs. NCBI nr
Match: XP_023551399.1 (protoporphyrinogen oxidase, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551400.1 protoporphyrinogen oxidase, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of Carg24269-RA vs. NCBI nr
Match: XP_022938644.1 (protoporphyrinogen oxidase 2, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata]) HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of Carg24269-RA vs. TAIR10
Match: AT5G14220.1 (Flavin containing amine oxidoreductase family) HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21 Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 0
BLAST of Carg24269-RA vs. TAIR10
Match: AT4G16310.1 (LSD1-like 3) HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06 Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0
BLAST of Carg24269-RA vs. TAIR10
Match: AT3G10390.1 (Flavin containing amine oxidoreductase family protein) HSP 1 Score: 48.1 bits (113), Expect = 6.5e-06 Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0
BLAST of Carg24269-RA vs. TAIR10
Match: AT1G65840.1 (polyamine oxidase 4) HSP 1 Score: 44.7 bits (104), Expect = 7.2e-05 Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0
BLAST of Carg24269-RA vs. TAIR10
Match: AT1G62830.1 (LSD1-like 1) HSP 1 Score: 44.3 bits (103), Expect = 9.4e-05 Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0
BLAST of Carg24269-RA vs. Swiss-Prot
Match: sp|O24164|PPOM_TOBAC (Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum OX=4097 GN=PPXII PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20 Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0
BLAST of Carg24269-RA vs. Swiss-Prot
Match: sp|Q8S9J1|PPOCM_ARATH (Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPOX2 PE=1 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.6e-20 Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 0
BLAST of Carg24269-RA vs. Swiss-Prot
Match: sp|Q94IG7|PPOCM_SPIOL (Protoporphyrinogen oxidase 2 OS=Spinacia oleracea OX=3562 GN=POX2 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19 Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0
BLAST of Carg24269-RA vs. Swiss-Prot
Match: sp|B5AR80|OXLA_BOTPA (L-amino-acid oxidase (Fragment) OS=Bothrops pauloensis OX=1042543 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06 Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
BLAST of Carg24269-RA vs. Swiss-Prot
Match: sp|Q6TGQ8|OXLA_BOTMO (L-amino-acid oxidase (Fragment) OS=Bothrops moojeni OX=98334 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.7e-06 Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0
BLAST of Carg24269-RA vs. TrEMBL
Match: tr|A0A1S3B382|A0A1S3B382_CUCME (Protoporphyrinogen oxidase OS=Cucumis melo OX=3656 GN=LOC103485496 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21 Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of Carg24269-RA vs. TrEMBL
Match: tr|A0A1S4DU02|A0A1S4DU02_CUCME (Protoporphyrinogen oxidase OS=Cucumis melo OX=3656 GN=LOC103485496 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21 Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0
BLAST of Carg24269-RA vs. TrEMBL
Match: tr|A0A1S3B3W8|A0A1S3B3W8_CUCME (Protoporphyrinogen oxidase OS=Cucumis melo OX=3656 GN=LOC103485496 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21 Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 0
BLAST of Carg24269-RA vs. TrEMBL
Match: tr|A0A0A0K7K1|A0A0A0K7K1_CUCSA (Protoporphyrinogen oxidase OS=Cucumis sativus OX=3659 GN=Csa_6G007980 PE=3 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 8.7e-21 Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0
BLAST of Carg24269-RA vs. TrEMBL
Match: tr|A0A2I0JSG3|A0A2I0JSG3_PUNGR (Uncharacterized protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_020337 PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20 Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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