Carg24105-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGGTCTCTCTTTCCTCCTGTTGATTTTACCTTTATGTTTCAGTGAAGTTTTCTGTACTGATTATTAAGTTTATTCTGTCGATTTAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGGTATGAGATGTTATATTCCAGTAATCTTGATGGCTTAATGCTTCATGTTCTCAAATAACATTTCTGTTGTATTGGTCTTTGACTTACAATATTATGTTTTGAGACTAAGTATTGTGCTCCGTTAATGGTTGCATTTATTGAATTGGGTGGTTTCAGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTAAGCGTCTATTTTAATTGTTTTTCAATTTACGTATGCAACTTACACACACACCTATTGCTTCCTTCTTTGTGTTTTCCCGTCTTTGTTGTGAGCTAATAAACTTAAATTAGTAGAACAAATTACTAACTTATAGAGTAATTTTAGGAGAATGGTTAATAGACTTAGTAGAATAAGTTACTAACGTATGGAGTAACTTTAGGAGAATTGTTAGTAGACTTAGTAGAATAAGTTACTAACTTATGGAGCAACTATAGGAGAACCGGTAGTAGTTGCCAAATTGTGGACCAAATTTTATGCTTTAGTTAGGAAGATTGTTGGTGGTTCGTAACTTGACGAGAAAGTTTAGGAAACTAGTTAGTGTTTTCTTCACTATAAATACTCATGAGATGTATGCTCTTTTCACGACAACAAGAAAGAGAATTGAAAAGCTAAGTGCTGAAGGTTTCTTTGTTCCACAAGATCTCTCCCCTCAAGTTGTTCCTTTGTTTCTTTTACTTGTTTCGACATATTCGATCATGGGTCATATCCAACATTTGTAAGGTTCGTATATTAATTTGATGAATCAACTGATGATCTAACCTCACGTCTGAAACATTTGAATCAAAATGGAGTGTAGATAGCTCTTAAAAAATTTCCTAATTGAAGTGAAGTTTATCCTTGTTCATCGTATAAGTGCAGGTGTCTTTCCATGCATATGTTAAAACTAATGTGAATATTTTAACCTGTCTCTTCATGTTGGGGTATCACTTTTCCGTAGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTGTGTGCAAATAGTTACTTTCATTTTTCGTTTTGCTTTTCACCTCCAAAACCAAAAGTGTTATATTATGCTTCCTAAGTTCCAATTTCACCTTCTTTGCCTTGGCAGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGGTAAAGCTATATTTACTTTTGATAAAATTAATAATTTAATCAAGCCATTCAGTCTGTAGATCTTGAAGTATAAGATTATGGGCAAGCAAGTGCTATCTTCTTCCATTTGAGTGGATATCAAGTGGGATAATATCTACCTTTGGAAAGAAATTTATCATAAGCTCCCTTCGATCTCTCACTTGGACTATTGTTTTGTTCGAGATGAGAAGGAAACGTATTTTTGAGAGGATAAGTGGATGGGGGATAGATCCCTATGATGTTTTCTTGTTTATTCTTTCTTAATTCTATGAAAAATTGCTTGATGGCTGATGACGTATTTCGTTCAAGAAGCTCTCGATCTTTATCGCTTAGGCTCACCTGTCATTTGTCAGATAGGGAAACAGCTAATGTAACGACTCTTTTATCTTTAATAAGGGATTTTCGTCTCTAATCTCTAACCCTACTTGAGACTTGTTGTAACAATCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTTGGTTTTCCCTTATAGGCTTCTCCTCAAGGTTTTAAAACGCGTTTGTTAGGGAGAGGTTTCCACACCCTTAAAAAGAATGTTTTGTTCCTTTCTCTAACCAGTTTTGTTCCCTTCTCTAACCAATGTGGGATCTCACAATCCACCACCTTGGGGCCCAATGTCCTCATTGGCACACTGCTCGGTGTCTGGCTCTGATTCCATTTATAATAGCTCAAACCCACCACTAGCAGATATTGTTCACTCTAGGTTTTTCCTTTCGTGCTTCCCCTCAAGGTTCTTAAAACGCGTATGCTAGGGAGAGATTTCCACACCTTTATAAAGAATGAGCTTCGTTCTCCTCCCTAACCGAGGTTGGATCTCAAATTTGGTCCCTCGTTTGATTCTTAGCTCTATGTTGGTTTTATTGTTCTTGACTAGAGTCCCTTTAGTGGGACTTTCTTTTTGTGGTTTTTTCCTTTTTTTTTTTTTTTTTTTTCGCTCAAAGAAAATTTGGTTCTTTATACAAAAAAATAATAAGCATTTGATATCTCAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAGTAATTATCAGATTCTAAATATAATACTAGAGAAACTACTTGTAGGAACAAAGGGTATTCAATAATAAATGAAAAGAATTAAGATCTAAATTAAACTCGGTTAAAATATCATCACTAGCTCAATAGGGTCAAGCCCAATAATTGTAGAGCCCATTGTATATTTATTTTTAGAAAAATGATTTAGTTATTTTATTAGGAAAAAGATTTAAATGTTTTAGGAATAGATTGTCTAGCCTCCACTATAAATACCCCTCCATCCTACCTAGGTTTTCGTCGCAAGAAATCAAAAGCATAGAGTGCAGTAGTTTCTACAGAGTGTCTTGTAATCTCTTTCTCGATTGGTGTTAATAAAGAGTGCGTGTGTTTCCCACAAAAAGTTGTATTCAACAATCTGGTGTTAGAGCCATGCCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTCAAATGTTGAACGGAGGGTGTACTTTGTTCAATGGCTCCAAAGAAAGGAGTCGAGCCTCGATTAAAGGGAGGTTGTTCGAGAGCTCCATAGACCTCAGGGGAGGTTCTATGATGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTATCGAAAAGAGTAGTCCCACATTGGCTAATTAAGAGGAAGATCATGGGTTTATAAGTAAGGAACACTATATCCATTGGTATGAGGCCTTTGAGGGGAAACCAAAAGTAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATGCTATTGTGGAGAGTTGTGGTTCCTAACAAACTCAATAAAAATTTTCAAATCTGCACTCTTCCTCAAGCTTGGAGTTGAATTCGTGCATTTTATTTATTTATTTATTTATTTATTTTCTAATGACCATGATATTATTTTGGCCTTTTGTTGCTCCAGGTAAATGATATGCACGGGTTCTGA CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAATGATATGCACGGGTTCTGA CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAATGATATGCACGGGTTCTGA HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFSANGQLLASGSFDGVIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGIELIFFCFLLSHVNDMHGF
BLAST of Carg24105-RA vs. NCBI nr
Match: XP_022925391.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111432693 [Cucurbita moschata]) HSP 1 Score: 206.1 bits (523), Expect = 1.2e-49 Identity = 105/110 (95.45%), Postives = 105/110 (95.45%), Query Frame = 0
BLAST of Carg24105-RA vs. NCBI nr
Match: XP_008463066.1 (PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo]) HSP 1 Score: 194.1 bits (492), Expect = 4.8e-46 Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0
BLAST of Carg24105-RA vs. NCBI nr
Match: XP_008463068.1 (PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo]) HSP 1 Score: 194.1 bits (492), Expect = 4.8e-46 Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0
BLAST of Carg24105-RA vs. NCBI nr
Match: XP_004138371.1 (PREDICTED: angio-associated migratory cell protein [Cucumis sativus]) HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45 Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Carg24105-RA vs. NCBI nr
Match: KGN45882.1 (hypothetical protein Csa_6G016980 [Cucumis sativus]) HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45 Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Carg24105-RA vs. TAIR10
Match: AT1G71840.1 (transducin family protein / WD-40 repeat family protein) HSP 1 Score: 118.2 bits (295), Expect = 6.0e-27 Identity = 64/107 (59.81%), Postives = 74/107 (69.16%), Query Frame = 0
BLAST of Carg24105-RA vs. Swiss-Prot
Match: sp|Q3SZK1|AAMP_BOVIN (Angio-associated migratory cell protein OS=Bos taurus OX=9913 GN=AAMP PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg24105-RA vs. Swiss-Prot
Match: sp|Q7YR70|AAMP_CANLF (Angio-associated migratory cell protein OS=Canis lupus familiaris OX=9615 GN=AAMP PE=3 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg24105-RA vs. Swiss-Prot
Match: sp|Q13685|AAMP_HUMAN (Angio-associated migratory cell protein OS=Homo sapiens OX=9606 GN=AAMP PE=1 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg24105-RA vs. Swiss-Prot
Match: sp|Q5RCG7|AAMP_PONAB (Angio-associated migratory cell protein OS=Pongo abelii OX=9601 GN=AAMP PE=2 SV=2) HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0
BLAST of Carg24105-RA vs. Swiss-Prot
Match: sp|O13982|YEC8_SCHPO (Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25H1.08c PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06 Identity = 34/111 (30.63%), Postives = 66/111 (59.46%), Query Frame = 0
BLAST of Carg24105-RA vs. TrEMBL
Match: tr|A0A1S3CID2|A0A1S3CID2_CUCME (angio-associated migratory cell protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46 Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0
BLAST of Carg24105-RA vs. TrEMBL
Match: tr|A0A1S3CIC4|A0A1S3CIC4_CUCME (angio-associated migratory cell protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46 Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0
BLAST of Carg24105-RA vs. TrEMBL
Match: tr|A0A0A0KBX7|A0A0A0KBX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016980 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45 Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of Carg24105-RA vs. TrEMBL
Match: tr|A0A2P5FQS1|A0A2P5FQS1_9ROSA (Guanine nucleotide-binding protein, beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_039070 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 7.3e-35 Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0
BLAST of Carg24105-RA vs. TrEMBL
Match: tr|A0A2P5BE38|A0A2P5BE38_PARAD (Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_247610 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 7.3e-35 Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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