Carg24105 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24105
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Angio-associated migratory cell protein
Location	Cucurbita_argyrosperma_scaffold_177 : 208648 .. 212356 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGGTCTCTCTTTCCTCCTGTTGATTTTACCTTTATGTTTCAGTGAAGTTTTCTGTACTGATTATTAAGTTTATTCTGTCGATTTAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGGTATGAGATGTTATATTCCAGTAATCTTGATGGCTTAATGCTTCATGTTCTCAAATAACATTTCTGTTGTATTGGTCTTTGACTTACAATATTATGTTTTGAGACTAAGTATTGTGCTCCGTTAATGGTTGCATTTATTGAATTGGGTGGTTTCAGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTAAGCGTCTATTTTAATTGTTTTTCAATTTACGTATGCAACTTACACACACACCTATTGCTTCCTTCTTTGTGTTTTCCCGTCTTTGTTGTGAGCTAATAAACTTAAATTAGTAGAACAAATTACTAACTTATAGAGTAATTTTAGGAGAATGGTTAATAGACTTAGTAGAATAAGTTACTAACGTATGGAGTAACTTTAGGAGAATTGTTAGTAGACTTAGTAGAATAAGTTACTAACTTATGGAGCAACTATAGGAGAACCGGTAGTAGTTGCCAAATTGTGGACCAAATTTTATGCTTTAGTTAGGAAGATTGTTGGTGGTTCGTAACTTGACGAGAAAGTTTAGGAAACTAGTTAGTGTTTTCTTCACTATAAATACTCATGAGATGTATGCTCTTTTCACGACAACAAGAAAGAGAATTGAAAAGCTAAGTGCTGAAGGTTTCTTTGTTCCACAAGATCTCTCCCCTCAAGTTGTTCCTTTGTTTCTTTTACTTGTTTCGACATATTCGATCATGGGTCATATCCAACATTTGTAAGGTTCGTATATTAATTTGATGAATCAACTGATGATCTAACCTCACGTCTGAAACATTTGAATCAAAATGGAGTGTAGATAGCTCTTAAAAAATTTCCTAATTGAAGTGAAGTTTATCCTTGTTCATCGTATAAGTGCAGGTGTCTTTCCATGCATATGTTAAAACTAATGTGAATATTTTAACCTGTCTCTTCATGTTGGGGTATCACTTTTCCGTAGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTGTGTGCAAATAGTTACTTTCATTTTTCGTTTTGCTTTTCACCTCCAAAACCAAAAGTGTTATATTATGCTTCCTAAGTTCCAATTTCACCTTCTTTGCCTTGGCAGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGGTAAAGCTATATTTACTTTTGATAAAATTAATAATTTAATCAAGCCATTCAGTCTGTAGATCTTGAAGTATAAGATTATGGGCAAGCAAGTGCTATCTTCTTCCATTTGAGTGGATATCAAGTGGGATAATATCTACCTTTGGAAAGAAATTTATCATAAGCTCCCTTCGATCTCTCACTTGGACTATTGTTTTGTTCGAGATGAGAAGGAAACGTATTTTTGAGAGGATAAGTGGATGGGGGATAGATCCCTATGATGTTTTCTTGTTTATTCTTTCTTAATTCTATGAAAAATTGCTTGATGGCTGATGACGTATTTCGTTCAAGAAGCTCTCGATCTTTATCGCTTAGGCTCACCTGTCATTTGTCAGATAGGGAAACAGCTAATGTAACGACTCTTTTATCTTTAATAAGGGATTTTCGTCTCTAATCTCTAACCCTACTTGAGACTTGTTGTAACAATCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTTGGTTTTCCCTTATAGGCTTCTCCTCAAGGTTTTAAAACGCGTTTGTTAGGGAGAGGTTTCCACACCCTTAAAAAGAATGTTTTGTTCCTTTCTCTAACCAGTTTTGTTCCCTTCTCTAACCAATGTGGGATCTCACAATCCACCACCTTGGGGCCCAATGTCCTCATTGGCACACTGCTCGGTGTCTGGCTCTGATTCCATTTATAATAGCTCAAACCCACCACTAGCAGATATTGTTCACTCTAGGTTTTTCCTTTCGTGCTTCCCCTCAAGGTTCTTAAAACGCGTATGCTAGGGAGAGATTTCCACACCTTTATAAAGAATGAGCTTCGTTCTCCTCCCTAACCGAGGTTGGATCTCAAATTTGGTCCCTCGTTTGATTCTTAGCTCTATGTTGGTTTTATTGTTCTTGACTAGAGTCCCTTTAGTGGGACTTTCTTTTTGTGGTTTTTTCCTTTTTTTTTTTTTTTTTTTTCGCTCAAAGAAAATTTGGTTCTTTATACAAAAAAATAATAAGCATTTGATATCTCAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAGTAATTATCAGATTCTAAATATAATACTAGAGAAACTACTTGTAGGAACAAAGGGTATTCAATAATAAATGAAAAGAATTAAGATCTAAATTAAACTCGGTTAAAATATCATCACTAGCTCAATAGGGTCAAGCCCAATAATTGTAGAGCCCATTGTATATTTATTTTTAGAAAAATGATTTAGTTATTTTATTAGGAAAAAGATTTAAATGTTTTAGGAATAGATTGTCTAGCCTCCACTATAAATACCCCTCCATCCTACCTAGGTTTTCGTCGCAAGAAATCAAAAGCATAGAGTGCAGTAGTTTCTACAGAGTGTCTTGTAATCTCTTTCTCGATTGGTGTTAATAAAGAGTGCGTGTGTTTCCCACAAAAAGTTGTATTCAACAATCTGGTGTTAGAGCCATGCCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTCAAATGTTGAACGGAGGGTGTACTTTGTTCAATGGCTCCAAAGAAAGGAGTCGAGCCTCGATTAAAGGGAGGTTGTTCGAGAGCTCCATAGACCTCAGGGGAGGTTCTATGATGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTATCGAAAAGAGTAGTCCCACATTGGCTAATTAAGAGGAAGATCATGGGTTTATAAGTAAGGAACACTATATCCATTGGTATGAGGCCTTTGAGGGGAAACCAAAAGTAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATGCTATTGTGGAGAGTTGTGGTTCCTAACAAACTCAATAAAAATTTTCAAATCTGCACTCTTCCTCAAGCTTGGAGTTGAATTCGTGCATTTTATTTATTTATTTATTTATTTATTTTCTAATGACCATGATATTATTTTGGCCTTTTGTTGCTCCAGGTAAATGATATGCACGGGTTCTGA

mRNA sequence

CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAATGATATGCACGGGTTCTGA

Coding sequence (CDS)

CATGAGGAGGAAGATGATCACGGTGAGGTCTTCCTCGACGAAGATGACATACTCCACGAAGTCCAAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAAGGCTATGATGATGAATATGTTGATGAGGATGATGATTCAATTCATACATTTACTGGCCATACCGGTGAGGTTTACACGGTGGCTTGTAGTCCAATCGATGCCACATTAGTTGCGACGGGTGGTGGAGATGACAAAGGTTTTATGTGGAAGATCGGTCGAGGAGGTTTTGCACAGGAGCTTACCGGTCACAAGGATTCTGTGTCTAGCTTAGCATTTAGTGCAAATGGACAACTACTTGCATCAGGGAGTTTTGATGGTGTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCACACTTGAAGGTCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCGACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTTCAGTTACCTGCGGTGATTTTACCCCTGATGGTATTGAACTAATCTTCTTTTGTTTCTTACTATCCCATGTAAATGATATGCACGGGTTCTGA

Protein sequence

HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFSANGQLLASGSFDGVIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGIELIFFCFLLSHVNDMHGF

Homology

[Close]

BLAST of Carg24105 vs. NCBI nr
Match: XP_022925391.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111432693 [Cucurbita moschata])

HSP 1 Score: 206.1 bits (523), Expect = 1.2e-49
Identity = 105/110 (95.45%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDEDDILHEVQV    LPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEDDILHEVQVXXXXLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFSAN 111
           TVACSPIDATLVATGGGDDKGFMWKIGRG FAQELTGHKDSVSSLAFSAN
Sbjct: 67  TVACSPIDATLVATGGGDDKGFMWKIGRGDFAQELTGHKDSVSSLAFSAN 116

[Close]

BLAST of Carg24105 vs. NCBI nr
Match: XP_008463066.1 (PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 4.8e-46
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
           TV CSPIDATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAFS
Sbjct: 67  TVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFS 114

[Close]

BLAST of Carg24105 vs. NCBI nr
Match: XP_008463068.1 (PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 4.8e-46
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
           TV CSPIDATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAFS
Sbjct: 67  TVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFS 114

[Close]

BLAST of Carg24105 vs. NCBI nr
Match: XP_004138371.1 (PREDICTED: angio-associated migratory cell protein [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAF 108
           TV CSP+DATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAF
Sbjct: 67  TVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAF 113

[Close]

BLAST of Carg24105 vs. NCBI nr
Match: KGN45882.1 (hypothetical protein Csa_6G016980 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 112 HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 171

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAF 108
           TV CSP+DATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAF
Sbjct: 172 TVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAF 218

[Close]

BLAST of Carg24105 vs. TAIR10
Match: AT1G71840.1 (transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-27
Identity = 64/107 (59.81%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 3   EEDDHGEVFLDEDDILHEVQVDEE-DLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVYT 62
           EE+D GE+FL E D+L E+ VDEE                   +DDS+HTFTGH GE+Y 
Sbjct: 16  EEEDEGEIFLGESDVLREIDVDEEXXXXXXXXXXXXXXXXXXXNDDSVHTFTGHKGELYA 75

Query: 63  VACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
           +ACSP DATLVATGGGDDK F+WKIG G +A EL GHKDSVS LAFS
Sbjct: 76  LACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFS 122

[Close]

BLAST of Carg24105 vs. Swiss-Prot
Match: sp|Q3SZK1|AAMP_BOVIN (Angio-associated migratory cell protein OS=Bos taurus OX=9913 GN=AAMP PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 46  DDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSL 105
           DDS  TF  H+  V+ V+  P   TL  TGG DDK F+W++  G    E  GHKDSV+  
Sbjct: 81  DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCA 140

Query: 106 AFS 109
            FS
Sbjct: 141 GFS 143

[Close]

BLAST of Carg24105 vs. Swiss-Prot
Match: sp|Q7YR70|AAMP_CANLF (Angio-associated migratory cell protein OS=Canis lupus familiaris OX=9615 GN=AAMP PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 46  DDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSL 105
           DDS  TF  H+  V+ V+  P   TL  TGG DDK F+W++  G    E  GHKDSV+  
Sbjct: 82  DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCA 141

Query: 106 AFS 109
            FS
Sbjct: 142 GFS 144

[Close]

BLAST of Carg24105 vs. Swiss-Prot
Match: sp|Q13685|AAMP_HUMAN (Angio-associated migratory cell protein OS=Homo sapiens OX=9606 GN=AAMP PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 46  DDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSL 105
           DDS  TF  H+  V+ V+  P   TL  TGG DDK F+W++  G    E  GHKDSV+  
Sbjct: 81  DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCA 140

Query: 106 AFS 109
            FS
Sbjct: 141 GFS 143

[Close]

BLAST of Carg24105 vs. Swiss-Prot
Match: sp|Q5RCG7|AAMP_PONAB (Angio-associated migratory cell protein OS=Pongo abelii OX=9601 GN=AAMP PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-08
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 46  DDSIHTFTGHTGEVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSL 105
           DDS  TF  H+  V+ V+  P   TL  TGG DDK F+W++  G    E  GHKDSV+  
Sbjct: 81  DDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCA 140

Query: 106 AFS 109
            FS
Sbjct: 141 GFS 143

[Close]

BLAST of Carg24105 vs. Swiss-Prot
Match: sp|O13982|YEC8_SCHPO (Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25H1.08c PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 34/111 (30.63%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 3   EEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDE-----DDDSIHTFTGHTG 62
           EE+++ E+++ E+++   ++ +++ +   V E+  + E  D       D S+  F  H  
Sbjct: 3   EEEENQELYIAENEVEEVIKDNDKLMDQGVTEDEAEQEQNDTMNNMVMDMSVQGFFEHKD 62

Query: 63  EVYTVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
            V++V+ +P+ + L A+GGGDD G++W I  G    +LTGHKDS+ ++ +S
Sbjct: 63  SVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGHKDSIVAIDWS 113

[Close]

BLAST of Carg24105 vs. TrEMBL
Match: tr|A0A1S3CID2|A0A1S3CID2_CUCME (angio-associated migratory cell protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
           TV CSPIDATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAFS
Sbjct: 67  TVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFS 114

[Close]

BLAST of Carg24105 vs. TrEMBL
Match: tr|A0A1S3CIC4|A0A1S3CIC4_CUCME (angio-associated migratory cell protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501304 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 98/108 (90.74%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 66

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAFS 109
           TV CSPIDATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAFS
Sbjct: 67  TVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFS 114

[Close]

BLAST of Carg24105 vs. TrEMBL
Match: tr|A0A0A0KBX7|A0A0A0KBX7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016980 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   HEEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVY 60
           HEEEDDHGEVFLDE DI+HEV VDEEDLPDAVDEEG DDEY DE DDS+HTFTGHTGEVY
Sbjct: 112 HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVY 171

Query: 61  TVACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAF 108
           TV CSP+DATLVATGGGDDKGFMWKIGRG FAQEL+GHKDSVSSLAF
Sbjct: 172 TVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAF 218

[Close]

BLAST of Carg24105 vs. TrEMBL
Match: tr|A0A2P5FQS1|A0A2P5FQS1_9ROSA (Guanine nucleotide-binding protein, beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_039070 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.3e-35
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 2   EEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVYT 61
           EEEDDHGEVFLDE DI+HE+ VDEEDLPDA D    D +  DE DDS+H FTGHTGE+Y+
Sbjct: 11  EEEDDHGEVFLDESDIIHELTVDEEDLPDADDGAASDSDIGDEPDDSMHIFTGHTGELYS 70

Query: 62  VACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAF 108
           VACSP DA+LVATGGGDDKGF+WKIG+G +A EL GHKDSVSSLA+
Sbjct: 71  VACSPTDASLVATGGGDDKGFLWKIGQGDWASELQGHKDSVSSLAY 116

[Close]

BLAST of Carg24105 vs. TrEMBL
Match: tr|A0A2P5BE38|A0A2P5BE38_PARAD (Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_247610 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.3e-35
Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 2   EEEDDHGEVFLDEDDILHEVQVDEEDLPDAVDEEGYDDEYVDEDDDSIHTFTGHTGEVYT 61
           EEEDDHGEVFLDE DI+HE+ VDEEDLPDA D    D +  DE DDS+H FTGHTGE+Y+
Sbjct: 11  EEEDDHGEVFLDESDIIHELTVDEEDLPDADDGAASDSDIGDEPDDSMHIFTGHTGELYS 70

Query: 62  VACSPIDATLVATGGGDDKGFMWKIGRGGFAQELTGHKDSVSSLAF 108
           VACSP DA+LVATGGGDDKGF+WKIG+G +A EL GHKDSVSSLA+
Sbjct: 71  VACSPTDASLVATGGGDDKGFLWKIGQGDWASELQGHKDSVSSLAY 116

The following BLAST results are available for this feature:

BLAST of Carg24105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925391.1	1.2e-49	95.45	LOW QUALITY PROTEIN: uncharacterized protein LOC111432693 [Cucurbita moschata]	[more]
XP_008463066.1	4.8e-46	90.74	PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo]	[more]
XP_008463068.1	4.8e-46	90.74	PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo]	[more]
XP_004138371.1	1.8e-45	89.72	PREDICTED: angio-associated migratory cell protein [Cucumis sativus]	[more]
KGN45882.1	1.8e-45	89.72	hypothetical protein Csa_6G016980 [Cucumis sativus]	[more]

BLAST of Carg24105 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71840.1	6.0e-27	59.81	transducin family protein / WD-40 repeat family protein	[more]

BLAST of Carg24105 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3SZK1\|AAMP_BOVIN	4.6e-08	46.03	Angio-associated migratory cell protein OS=Bos taurus OX=9913 GN=AAMP PE=2 SV=1	[more]
sp\|Q7YR70\|AAMP_CANLF	4.6e-08	46.03	Angio-associated migratory cell protein OS=Canis lupus familiaris OX=9615 GN=AAM...	[more]
sp\|Q13685\|AAMP_HUMAN	4.6e-08	46.03	Angio-associated migratory cell protein OS=Homo sapiens OX=9606 GN=AAMP PE=1 SV=...	[more]
sp\|Q5RCG7\|AAMP_PONAB	4.6e-08	46.03	Angio-associated migratory cell protein OS=Pongo abelii OX=9601 GN=AAMP PE=2 SV=...	[more]
sp\|O13982\|YEC8_SCHPO	1.1e-06	30.63	Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces po...	[more]

BLAST of Carg24105 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CID2\|A0A1S3CID2_CUCME	3.2e-46	90.74	angio-associated migratory cell protein isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A1S3CIC4\|A0A1S3CIC4_CUCME	3.2e-46	90.74	angio-associated migratory cell protein isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KBX7\|A0A0A0KBX7_CUCSA	1.2e-45	89.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016980 PE=4 SV=1	[more]
tr\|A0A2P5FQS1\|A0A2P5FQS1_9ROSA	7.3e-35	74.53	Guanine nucleotide-binding protein, beta subunit OS=Trema orientalis OX=63057 GN...	[more]
tr\|A0A2P5BE38\|A0A2P5BE38_PARAD	7.3e-35	74.53	Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=347...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24105-RA	Carg24105-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 88..127 e-value: 2.1E-10 score: 50.6 coord: 130..169 e-value: 2.3E-5 score: 33.8 coord: 45..85 e-value: 1.1E-4 score: 31.6
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 94..127 e-value: 5.6E-9 score: 36.4 coord: 48..80 e-value: 0.02 score: 15.6 coord: 133..169 e-value: 0.012 score: 16.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 95..136 score: 17.693
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 52..86 score: 8.57
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 137..178 score: 9.606
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 45..201 e-value: 8.7E-53 score: 181.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR19857:SF8	RIBOSOME ASSEMBLY PROTEIN SQT1	coord: 3..199
None	No IPR available	PANTHER	PTHR19857	FAMILY NOT NAMED	coord: 3..199
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 114..128
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 156..170
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 52..199 score: 29.925
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 48..199

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24105	Cla003780	Watermelon (97103) v1	carwmB0675
Carg24105	Csa6G016980	Cucumber (Chinese Long) v2	carcuB0699
Carg24105	MELO3C024996	Melon (DHL92) v3.5.1	carmeB0678
Carg24105	ClCG08G002560	Watermelon (Charleston Gray)	carwcgB0653
Carg24105	CSPI06G02550	Wild cucumber (PI 183967)	carcpiB0711
Carg24105	CmoCh09G012400	Cucurbita moschata (Rifu)	carcmoB0929
Carg24105	Lsi08G002400	Bottle gourd (USVL1VR-Ls)	carlsiB617
Carg24105	Cp4.1LG06g09540	Cucurbita pepo (Zucchini)	carcpeB0954
Carg24105	CsGy6G002610	Cucumber (Gy14) v2	carcgybB0675
Carg24105	MELO3C024997.2	Melon (DHL92) v3.6.1	carmedB0690
Carg24105	CsaV3_6G002750	Cucumber (Chinese Long) v3	carcucB0713
Carg24105	Cla97C08G146510	Watermelon (97103) v2	carwmbB0703
Carg24105	Bhi04G001760	Wax gourd	carwgoB0794

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24105	Cucumber (Gy14) v1	carcgyB0757
Carg24105	Cucurbita maxima (Rimu)	carcmaB0953