Carg23983-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTCTTCACCAAATCCTTCCCTCCGAGCAGCTTTTTGCAGCCCTATAAGCTCCCAAAACAAGACCACCCGACCGGTGATGAGCGTGTCCTGTAAAGGGACGGATTACTACACGTTGCTTTCGGTGAGTGATGGATGTCATGCGAGCAACGAAGACATCAAGAAGGCTTATAGAGCCAAGGCTTTGCAGTATCATCCTGACCTTGTTTGTGATCCTTCCCTCAAAGACAAGTGTACGAGGATGTTTGTTCAGCTCAATGCAGCCTATAAGACACTCTCTGATCCTGTTCTTAGAAGAGAGTATGATGATTCTTTGATGGGTTTGAAGGGCAATCATCATGGCACATATACAGGATTTAAAGGGGATTATAGAGACCTGTGGCAAAGGCAGATTCTCGAGCTCAATCGCCGGTCGAATCTTCGGAGGAATTGGTCGTTGTCGTCTTGGGGTGGGAGAATGCGAGCTCAAAATCGTTGA ATGTTTTCTTCACCAAATCCTTCCCTCCGAGCAGCTTTTTGCAGCCCTATAAGCTCCCAAAACAAGACCACCCGACCGGTGATGAGCGTGTCCTGTAAAGGGACGGATTACTACACGTTGCTTTCGGTGAGTGATGGATGTCATGCGAGCAACGAAGACATCAAGAAGGCTTATAGAGCCAAGGCTTTGCAGTATCATCCTGACCTTGTTTGTGATCCTTCCCTCAAAGACAAGTGTACGAGGATGTTTGTTCAGCTCAATGCAGCCTATAAGACACTCTCTGATCCTGTTCTTAGAAGAGAGTATGATGATTCTTTGATGGGTTTGAAGGGCAATCATCATGGCACATATACAGGATTTAAAGGGGATTATAGAGACCTGTGGCAAAGGCAGATTCTCGAGCTCAATCGCCGGTCGAATCTTCGGAGGAATTGGTCGTTGTCGTCTTGGGGTGGGAGAATGCGAGCTCAAAATCGTTGA ATGTTTTCTTCACCAAATCCTTCCCTCCGAGCAGCTTTTTGCAGCCCTATAAGCTCCCAAAACAAGACCACCCGACCGGTGATGAGCGTGTCCTGTAAAGGGACGGATTACTACACGTTGCTTTCGGTGAGTGATGGATGTCATGCGAGCAACGAAGACATCAAGAAGGCTTATAGAGCCAAGGCTTTGCAGTATCATCCTGACCTTGTTTGTGATCCTTCCCTCAAAGACAAGTGTACGAGGATGTTTGTTCAGCTCAATGCAGCCTATAAGACACTCTCTGATCCTGTTCTTAGAAGAGAGTATGATGATTCTTTGATGGGTTTGAAGGGCAATCATCATGGCACATATACAGGATTTAAAGGGGATTATAGAGACCTGTGGCAAAGGCAGATTCTCGAGCTCAATCGCCGGTCGAATCTTCGGAGGAATTGGTCGTTGTCGTCTTGGGGTGGGAGAATGCGAGCTCAAAATCGTTGA MFSSPNPSLRAAFCSPISSQNKTTRPVMSVSCKGTDYYTLLSVSDGCHASNEDIKKAYRAKALQYHPDLVCDPSLKDKCTRMFVQLNAAYKTLSDPVLRREYDDSLMGLKGNHHGTYTGFKGDYRDLWQRQILELNRRSNLRRNWSLSSWGGRMRAQNR
BLAST of Carg23983-RA vs. NCBI nr
Match: XP_022927706.1 (chaperone protein dnaJ 20, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 327.4 bits (838), Expect = 2.7e-86 Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0
BLAST of Carg23983-RA vs. NCBI nr
Match: XP_023530181.1 (chaperone protein dnaJ 20, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 323.2 bits (827), Expect = 5.1e-85 Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of Carg23983-RA vs. NCBI nr
Match: XP_022989514.1 (chaperone protein dnaJ 20, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 321.6 bits (823), Expect = 1.5e-84 Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0
BLAST of Carg23983-RA vs. NCBI nr
Match: XP_022967659.1 (chaperone protein dnaJ 20, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 180.6 bits (457), Expect = 4.1e-42 Identity = 93/140 (66.43%), Postives = 111/140 (79.29%), Query Frame = 0
BLAST of Carg23983-RA vs. NCBI nr
Match: XP_022963776.1 (chaperone protein dnaJ 20, chloroplastic-like [Cucurbita moschata] >XP_023511548.1 chaperone protein dnaJ 20, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 180.3 bits (456), Expect = 5.3e-42 Identity = 93/140 (66.43%), Postives = 111/140 (79.29%), Query Frame = 0
BLAST of Carg23983-RA vs. TAIR10
Match: AT4G13830.2 (DNAJ-like 20) HSP 1 Score: 68.6 bits (166), Expect = 4.1e-12 Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 0
BLAST of Carg23983-RA vs. TAIR10
Match: AT2G20560.1 (DNAJ heat shock family protein) HSP 1 Score: 65.1 bits (157), Expect = 4.5e-11 Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of Carg23983-RA vs. TAIR10
Match: AT2G35720.1 (DNAJ heat shock N-terminal domain-containing protein) HSP 1 Score: 62.4 bits (150), Expect = 2.9e-10 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 0
BLAST of Carg23983-RA vs. TAIR10
Match: AT4G28480.1 (DNAJ heat shock family protein) HSP 1 Score: 62.0 bits (149), Expect = 3.8e-10 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of Carg23983-RA vs. TAIR10
Match: AT1G80030.1 (Molecular chaperone Hsp40/DnaJ family protein) HSP 1 Score: 58.5 bits (140), Expect = 4.2e-09 Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 0
BLAST of Carg23983-RA vs. Swiss-Prot
Match: sp|B5YAR4|DNAJ_DICT6 (Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=dnaJ PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 5.6e-11 Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0
BLAST of Carg23983-RA vs. Swiss-Prot
Match: sp|Q9SDN0|DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATJ20 PE=1 SV=2) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11 Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 0
BLAST of Carg23983-RA vs. Swiss-Prot
Match: sp|Q9UDY4|DNJB4_HUMAN (DnaJ homolog subfamily B member 4 OS=Homo sapiens OX=9606 GN=DNAJB4 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of Carg23983-RA vs. Swiss-Prot
Match: sp|Q5R8J8|DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of Carg23983-RA vs. Swiss-Prot
Match: sp|Q2KIT4|DNJB4_BOVIN (DnaJ homolog subfamily B member 4 OS=Bos taurus OX=9913 GN=DNAJB4 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of Carg23983-RA vs. TrEMBL
Match: tr|A0A1S3C0P6|A0A1S3C0P6_CUCME (chaperone protein dnaJ 20, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495683 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39 Identity = 99/168 (58.93%), Postives = 120/168 (71.43%), Query Frame = 0
BLAST of Carg23983-RA vs. TrEMBL
Match: tr|A0A0A0K7A4|A0A0A0K7A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061190 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36 Identity = 97/170 (57.06%), Postives = 117/170 (68.82%), Query Frame = 0
BLAST of Carg23983-RA vs. TrEMBL
Match: tr|A0A1S2YH87|A0A1S2YH87_CICAR (chaperone protein dnaJ 20, chloroplastic-like OS=Cicer arietinum OX=3827 GN=LOC101490309 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25 Identity = 72/153 (47.06%), Postives = 95/153 (62.09%), Query Frame = 0
BLAST of Carg23983-RA vs. TrEMBL
Match: tr|A0A2P4L1P1|A0A2P4L1P1_QUESU (Chaperone protein dnaj 20, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_72281 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24 Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 0
BLAST of Carg23983-RA vs. TrEMBL
Match: tr|A0A2I4FYV8|A0A2I4FYV8_9ROSI (chaperone protein dnaJ 20, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109003233 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 77/168 (45.83%), Postives = 102/168 (60.71%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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