Carg23453-RA (mRNA) Silver-seed gourd

Overview
NameCarg23453-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_196 : 3844 .. 5830 (+)
Sequence length603
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGTCGACTATTGATGGATATGAAGCTTCAGGCGGAGAGGACAGTGACCGAGTTCCTTTAATGAATCTTTCGTTCATGCCAGATTAAACATGATGAGACATACCCGATTATGAAGTATGGAGTCACATTCTTGAATCTATGCCCTCCTTCCTTCTCCTTTTTAACGACTTTGTTTTATCAAATATTTTTAGTAATTTTTTATCTGTTCTTTCTCATGTTGTTGAGTTAACAATGCAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTGTAATGGAGTTAATATGCATTCAAGTTTATAGTCCTATCTGCTAAAATAAAATAACAAGTAGACACTGCTTTTCTTAGTGGGTTTAACCTATTTCACTGTGATGTTTTGTTTTATAAAGATGATATGTGACTATTGAAAATTGTAGACCACATTACTTGTTTTGACTTTTCTCTGCAGGCTGTTCAACTGTGGATGGTTGAATAAAGCGCGTTCGTCACAGGCGGCCTACATATTGTTGTGAAGTGCAGATAACCACAACCTCTGCTTCTAGCTTTGCCAGGTATGAGAGCAGAACAGTTGAAACGTAGACTTCATTCCCATCCTTGTTGTTATTTCTTTATAACTGCAGTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGGTGAAATTGTGGTTTCTAGATTGTGAATTTTTGGGGAGTTTTGGTAACGAGTTGATGAATTTGTTTTTTAATTCACATGATTCTGTTTTGTTGTTAGGATTTGTGATCTTTGATTTCGCCTGTTTTTTTTTTTTTTTTTACAGTTCTCTTTTTAACTGATTGATTGTGGGATTTGTAATCTAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGGTAACATTCTTATATAGCAAACGCTACACATGATCAGAAGATTATTGTAGGACTTTTAGCAGTTCTTAACTTCTAAACAAGTGATCATGCTTTTAGGTGCGCATGGTGACGCATGGGGGATGTCCTGTGACACCACCCACACCACCCCCTCGGTTTATTTGCATTTCCAACTGACATGTGCCTGCTGATTTGTTAGATTTATCTAATGAGAAATTCCTAGCAAAGCTTGCTCGGCTCTAGATAGCAATTCCTAGGAAACTTTGCAATAGTAGACCTAGGAAAATTTGCAATAGTAGACCTAGGAAAACTTGGCAGGAAGATTACTTGGAAACTTGGCAATAGAAGACCTAGGAAAACAGCAGCTAGACCGAGCAATTCCTAGGAGAACTGCCTGGTTCTAGACCGAGCAATTCCTAGGAGAACTGCCTGGCTCTAGACCGAGTAATTCCTAGGAAAACTGCCCGGCTCTAGCCTGAGTAATTCCTAGGAGAACTGCCCAGCTCTAGCCCGAGTAATTCCTAGGAGAACTGCCACGGCTCTAGACCGAGCAATTCCTAGGAAAACTGGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

mRNA sequence

GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

Coding sequence (CDS)

GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

Protein sequence

EKLLKKVSLAHQPALVLFSLKHAVVSTQAEQMSSSHHGRLLFESSLGSLDIIRSEYPPQELKSLRDSLAQRDFHCQGVAGSHSEDGALQHTLLCGSVSFLTGASDEDFCNSHEIEMVRVADGVLSYSKISLLLLQPNSFEEAVLLLGLDVGASQLSSMATTRNLAVEVVSRDRAIPRKTAPALDRAIPRKTAPALDPSNS
Homology
[Close]
BLAST of Carg23453-RA vs. NCBI nr
Match: XP_022965451.1 (uncharacterized protein LOC111465355 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 63/142 (44.37%), Postives = 70/142 (49.30%), Query Frame = 0 

Query: 1   EKLLKKVSLAHQPALVLFSLKHAVVSTQAEQMSSSHHGRLLFESSLGSLDIIRSEYPPQE 60
           EKLLKKVSLA QPALVLFSLKHAV+S QA          L+  +    L  IRSEYPPQE
Sbjct: 51  EKLLKKVSLALQPALVLFSLKHAVLSKQAP---------LVRRAVWARLTSIRSEYPPQE 110

Query: 61  LKSLRDSLAQRDFH--------------------------------------CQGVAGSH 103
           LKSLRDSLAQ+                                          +G+ GSH
Sbjct: 111 LKSLRDSLAQKGLPLSRSTINGYEASGGEDSDRVPLLNLFIHARLHDETYPIMKGLPGSH 170

The following BLAST results are available for this feature:
BLAST of Carg23453-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022965451.13.6e-1144.37uncharacterized protein LOC111465355 [Cucurbita maxima][more]
BLAST of Carg23453-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg23453-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23453-RA vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23453Carg23453gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23453-RACarg23453-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23453-RA.exon.1Carg23453-RA.exon.1exon
Carg23453-RA.exon.2Carg23453-RA.exon.2exon
Carg23453-RA.exon.3Carg23453-RA.exon.3exon
Carg23453-RA.exon.4Carg23453-RA.exon.4exon
Carg23453-RA.exon.5Carg23453-RA.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23453-RA.CDS.1Carg23453-RA.CDS.1CDS
Carg23453-RA.CDS.2Carg23453-RA.CDS.2CDS
Carg23453-RA.CDS.3Carg23453-RA.CDS.3CDS
Carg23453-RA.CDS.4Carg23453-RA.CDS.4CDS
Carg23453-RA.CDS.5Carg23453-RA.CDS.5CDS