Carg23453 (gene) Silver-seed gourd

Overview
NameCarg23453
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_196 : 3844 .. 5830 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGTCGACTATTGATGGATATGAAGCTTCAGGCGGAGAGGACAGTGACCGAGTTCCTTTAATGAATCTTTCGTTCATGCCAGATTAAACATGATGAGACATACCCGATTATGAAGTATGGAGTCACATTCTTGAATCTATGCCCTCCTTCCTTCTCCTTTTTAACGACTTTGTTTTATCAAATATTTTTAGTAATTTTTTATCTGTTCTTTCTCATGTTGTTGAGTTAACAATGCAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTGTAATGGAGTTAATATGCATTCAAGTTTATAGTCCTATCTGCTAAAATAAAATAACAAGTAGACACTGCTTTTCTTAGTGGGTTTAACCTATTTCACTGTGATGTTTTGTTTTATAAAGATGATATGTGACTATTGAAAATTGTAGACCACATTACTTGTTTTGACTTTTCTCTGCAGGCTGTTCAACTGTGGATGGTTGAATAAAGCGCGTTCGTCACAGGCGGCCTACATATTGTTGTGAAGTGCAGATAACCACAACCTCTGCTTCTAGCTTTGCCAGGTATGAGAGCAGAACAGTTGAAACGTAGACTTCATTCCCATCCTTGTTGTTATTTCTTTATAACTGCAGTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGGTGAAATTGTGGTTTCTAGATTGTGAATTTTTGGGGAGTTTTGGTAACGAGTTGATGAATTTGTTTTTTAATTCACATGATTCTGTTTTGTTGTTAGGATTTGTGATCTTTGATTTCGCCTGTTTTTTTTTTTTTTTTTACAGTTCTCTTTTTAACTGATTGATTGTGGGATTTGTAATCTAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGGTAACATTCTTATATAGCAAACGCTACACATGATCAGAAGATTATTGTAGGACTTTTAGCAGTTCTTAACTTCTAAACAAGTGATCATGCTTTTAGGTGCGCATGGTGACGCATGGGGGATGTCCTGTGACACCACCCACACCACCCCCTCGGTTTATTTGCATTTCCAACTGACATGTGCCTGCTGATTTGTTAGATTTATCTAATGAGAAATTCCTAGCAAAGCTTGCTCGGCTCTAGATAGCAATTCCTAGGAAACTTTGCAATAGTAGACCTAGGAAAATTTGCAATAGTAGACCTAGGAAAACTTGGCAGGAAGATTACTTGGAAACTTGGCAATAGAAGACCTAGGAAAACAGCAGCTAGACCGAGCAATTCCTAGGAGAACTGCCTGGTTCTAGACCGAGCAATTCCTAGGAGAACTGCCTGGCTCTAGACCGAGTAATTCCTAGGAAAACTGCCCGGCTCTAGCCTGAGTAATTCCTAGGAGAACTGCCCAGCTCTAGCCCGAGTAATTCCTAGGAGAACTGCCACGGCTCTAGACCGAGCAATTCCTAGGAAAACTGGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

mRNA sequence

GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

Coding sequence (CDS)

GAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAGGCAGAGCAAATGTCGAGCTCCCACCATGGTCGCCTCTTGTTCGAGAGCAGTTTGGGCTCGCTTGACATCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAGGGACTTCCACTGTCAAGGGGTTGCAGGATCACATAGTGAGGATGGAGCCCTGCAACATACCCTACTTTGTGGAAGTGTTTCCTTTCTCACGGGTGCAAGTGATGAGGATTTTTGTAATTCACATGAGATCGAGATGGTTCGTGTTGCTGATGGTGTGTTGTCGTACTCCAAAATCAGCCTTCTTCTATTGCAGCCCAATTCATTTGAAGAGGCTGTTTTGTTGTTGGGATTAGATGTAGGTGCTTCCCAGTTATCCTCCATGGCAACCACCAGAAATTTGGCCGTGGAAGTCGTATCTCGGGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCGAGCAATTCCTAGGAAAACTGCCCCGGCTCTAGACCCGAGCAATTCCTAG

Protein sequence

EKLLKKVSLAHQPALVLFSLKHAVVSTQAEQMSSSHHGRLLFESSLGSLDIIRSEYPPQELKSLRDSLAQRDFHCQGVAGSHSEDGALQHTLLCGSVSFLTGASDEDFCNSHEIEMVRVADGVLSYSKISLLLLQPNSFEEAVLLLGLDVGASQLSSMATTRNLAVEVVSRDRAIPRKTAPALDRAIPRKTAPALDPSNS
Homology
[Close]
BLAST of Carg23453 vs. NCBI nr
Match: XP_022965451.1 (uncharacterized protein LOC111465355 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 63/142 (44.37%), Postives = 70/142 (49.30%), Query Frame = 0 

Query: 1   EKLLKKVSLAHQPALVLFSLKHAVVSTQAEQMSSSHHGRLLFESSLGSLDIIRSEYPPQE 60
           EKLLKKVSLA QPALVLFSLKHAV+S QA          L+  +    L  IRSEYPPQE
Sbjct: 51  EKLLKKVSLALQPALVLFSLKHAVLSKQAP---------LVRRAVWARLTSIRSEYPPQE 110

Query: 61  LKSLRDSLAQRDFH--------------------------------------CQGVAGSH 103
           LKSLRDSLAQ+                                          +G+ GSH
Sbjct: 111 LKSLRDSLAQKGLPLSRSTINGYEASGGEDSDRVPLLNLFIHARLHDETYPIMKGLPGSH 170

The following BLAST results are available for this feature:
BLAST of Carg23453 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022965451.13.6e-1144.37uncharacterized protein LOC111465355 [Cucurbita maxima][more]
BLAST of Carg23453 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg23453 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23453 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23453-RACarg23453-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23453CmaCh12G009690Cucurbita maxima (Rimu)carcmaB0670
Carg23453CmoCh12G009710Cucurbita moschata (Rifu)carcmoB0652
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None