Carg22979-RA (mRNA) Silver-seed gourd

Overview
NameCarg22979-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_319 : 243434 .. 246437 (-)
Sequence length532
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGGTATGACCGAGTGCCTTCTCTCCCCAACCCAGGTCTCTGCGTGCATGCATTTTATTGTATTGTCATGTGTCAAGTTATCACGTGTAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGGTCAGATTTGTTTTTCTTTTTCTTTCAAAATTTGCTTCATTTATAATTCTTGAGAATTAATGCATTTCCTTCTTTCAAAATTTTGACTTTTTGGAAAACAAATAATTTCAAGGGTTATTTGTGAAGGAAAAGAATAAAACAAGCCATTATATTTTGACATATAAAGATGGTTTGGTAATTATTTAGTTTTTTTTAAATTAAAATTTTAAGTTAATACACACTTTTTACCGATGTTTTTTAAAATATTTACTTTCTACCAATGAACTCAATTTTATTTTATTTTTTATTTTTATTTTTATTTTTTTTGTAACAATATTATGAATTTCTAATATGTTATAAATGAGAAACGAAATTATTATATTGAAGGAAGAAAAATCTTAGTATTTGAAACGAGAGGTTGCTTTTTGAGAAACGGAGATGATCTTTCCTTAGGATTTGATTACACTTGCATAGAACCCTAGTTCAGCTGGATGTTAGGCAATGTTAAGTTGATGGATTGAGTAGTTGCTGAGTTGAAGATTAACGTCTGATGCCCAAAAAGAATGCTATACTTTGGAGTTGATAGAACTTCAATACTTTATTTGATTGTTGTCAGTGGTTTTTCTTGAGAAAGAAAAGGTTATTTGCGCTTATGATTTTTCCCATGGATTTAACCACGGCTCTCACATCCTCTTTACACTATTAGTTCAAGTTTCGTAACTTGGAAGTCATATCTCTTCAAGTGCGGATTTTAAGTTGATCTTTGGAGGAGATTGGGATAGGGAGCTCAGGCTACCACTCTAGATGCAGCCATGAAATTTTATTGGTGGAGTACACATGACTTCGGCACCCTGTAGTCTTTTTTGACAAGTGAAAGTCGTCATGCTTGGTTAGTGGCTAGGTTATGGAAGGATTTATTCAATTGATTGAAATTAAAAGGAAATATCTTCTAAGCACATCTCGTAGGTGTTTACTTCATAAAAAAAAAAGGTGAGCTATGTGCAGATTGTTAGTGTTTAATAGTGCAACATTGGACCCTTTTTTCTTGATGTTGGCATATACGATAGAGTGGAATGCTTGTGGCTTGTTTATTTTATAGTTGTCGTTGGAATGGGTTTTCTAAGTGATGTCATTGGAATATAGAATTTGGGGGAACATTTGTTCTTTTGAAGGGGCTAAGGTTTGGGCGTTAAGATTTTATGTTATATTATCTGGAGGTAATAGTTCAATTGATCATATTCTTTGGAGCTACAACTTTGCTCGGATAGTTTGGAGTCTCTATCTTGATTTTTTGATTTTCAGTTTGCTACTTATGGGTATAGGGAGATGATCGGAGAGTTCCTTTTCCATCCGCCTTTTCGAGAGAAGAGAGTTTTTGTTGCAAGCGAGATGAATAATAGGACCTCTAGAGAGGTTAGGAGGGACCCAATAAATGTTTGGTCCCTCATTAGGTTCTATGTCTTTCTTCGAGCGTCGGTGATAACATTTTTTTGTTACTATTCTCTAGGTCTTATTGTACTCGATTGTTGCCCCTTTCTTTAGTTGGGTTTCCTTTGGTGGAGATTGGTTTTTTGGATGCCCTTGTACTTTCCTTTACTCATTTATTTTCTGAATGGAAGTTCAGTTCTTTAGTAAGAAAACAGATCCGTTGGATTAAATACCCCCTCCACCCAAAGTCTCTATAAGAAACTGGAAGGCTCAAGTTTATCTTGCCAATCTAGGTTTTCTCGTAGAAACATTGTGAGCACGCTTCTTATTTTCTGCGACCAATCAACTGATTGACGTAGAATTGTTGTGTGGGGAGCTCAATTCATAATATCTGTGGGTGTGGATATGAAAGTCAAAGAATGGTTGTCTATTGTTTCATGTGCTCTTTGGCATGTTTGTCCATGGGAATCTGCTGCAGAGTTCTATTGGCATGCACATGTCTCGTCCCTTTTTTAGTTTTTCTTTCTTGCCTATTTTTTGAACTTTAATTGCCGTAAATTTTTACTACCGAAGTCTCATTAGTTTAAGCATATCCTTGAAACCTACACAAAAAATGATTCATGAGCATCTTTAGCTCCACAGAATATGGTATTCTGTTTATATTTCTCTTAAAATACCGTGTGGCTGGTCTTAGTATTTAGAACAGTTGCAGTTTGGCTGATTTTCTGTCGTAGTTTGTAAATCAGATTATTATTAATTATCATTCATATTACTCATTAAAACTTTAGGGTGAACCTTACAATAATTTAGTTCCTGGATGTTTATTTATTAATTTACCTCTTGCTTAAGTCTTGGGTTCTTTTTCCTGCCAAAGTTAACTGTTCAGACCCCAACATGTTAGGTTCTTTGATAGATGGCCTCTTCTTTAGTTAATGTATCACGTAGAGTGTGCTAATGTCAAAATATAATTTTCTGCAGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAAGTCAATTTTTAAGTTCAAGCTTGTTTTCAAGGAATTTTATGAGAAAACTGTAGTTCCTCAAACTCAAGGAGAATGAATATAGTGTTCACAAGTGTGGATAAATTACATGGTGAATTGAAAAGTTTACTTAGTATCTTATTAGTCGTTGAAGAGTACATATGGTTTGTTTGGAGGGTTTCCATGGGTAGTAGTTCAACTGGTCTATTTTTATGGTCGTTGTCCACTTCGAGCATTGTAAATTTACCCTTAAAGACAATGTAATTTA

mRNA sequence

ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAAGTCAATTTTTAAGTTCAAGCTTGTTTTCAAGGAATTTTATGAGAAAACTGTAGTTCCTCAAACTCAAGGAGAATGAATATAGTGTTCACAAGTGTGGATAAATTACATGGTGAATTGAAAAGTTTACTTAGTATCTTATTAGTCGTTGAAGAGTACATATGGTTTGTTTGGAGGGTTTCCATGGGTAGTAGTTCAACTGGTCTATTTTTATGGTCGTTGTCCACTTCGAGCATTGTAAATTTACCCTTAAAGACAATGTAATTTA

Coding sequence (CDS)

ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAA

Protein sequence

MVDCASSCRQPAIALQQQQNLDMASNIPSQPTCFGGKLVTVGSQGKRKAVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSWI
Homology
[Close]
BLAST of Carg22979-RA vs. NCBI nr
Match: KGN48366.1 (hypothetical protein Csa_6G483465 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 88
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 72

[Close]
BLAST of Carg22979-RA vs. TrEMBL
Match: tr|A0A0A0KKT8|A0A0A0KKT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 88
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 72

The following BLAST results are available for this feature:
BLAST of Carg22979-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48366.14.6e-1189.74hypothetical protein Csa_6G483465 [Cucumis sativus][more]
BLAST of Carg22979-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22979-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22979-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKT8|A0A0A0KKT8_CUCSA3.0e-1189.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg22979Carg22979gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg22979-RACarg22979-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22979-RA.three_prime_UTR.1Carg22979-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22979-RA.CDS.3Carg22979-RA.CDS.3CDS
Carg22979-RA.CDS.2Carg22979-RA.CDS.2CDS
Carg22979-RA.CDS.1Carg22979-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22979-RA.exon.3Carg22979-RA.exon.3exon
Carg22979-RA.exon.2Carg22979-RA.exon.2exon
Carg22979-RA.exon.1Carg22979-RA.exon.1exon