Carg22979 (gene) Silver-seed gourd

Overview
NameCarg22979
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_319 : 243434 .. 246437 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGGTATGACCGAGTGCCTTCTCTCCCCAACCCAGGTCTCTGCGTGCATGCATTTTATTGTATTGTCATGTGTCAAGTTATCACGTGTAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGGTCAGATTTGTTTTTCTTTTTCTTTCAAAATTTGCTTCATTTATAATTCTTGAGAATTAATGCATTTCCTTCTTTCAAAATTTTGACTTTTTGGAAAACAAATAATTTCAAGGGTTATTTGTGAAGGAAAAGAATAAAACAAGCCATTATATTTTGACATATAAAGATGGTTTGGTAATTATTTAGTTTTTTTTAAATTAAAATTTTAAGTTAATACACACTTTTTACCGATGTTTTTTAAAATATTTACTTTCTACCAATGAACTCAATTTTATTTTATTTTTTATTTTTATTTTTATTTTTTTTGTAACAATATTATGAATTTCTAATATGTTATAAATGAGAAACGAAATTATTATATTGAAGGAAGAAAAATCTTAGTATTTGAAACGAGAGGTTGCTTTTTGAGAAACGGAGATGATCTTTCCTTAGGATTTGATTACACTTGCATAGAACCCTAGTTCAGCTGGATGTTAGGCAATGTTAAGTTGATGGATTGAGTAGTTGCTGAGTTGAAGATTAACGTCTGATGCCCAAAAAGAATGCTATACTTTGGAGTTGATAGAACTTCAATACTTTATTTGATTGTTGTCAGTGGTTTTTCTTGAGAAAGAAAAGGTTATTTGCGCTTATGATTTTTCCCATGGATTTAACCACGGCTCTCACATCCTCTTTACACTATTAGTTCAAGTTTCGTAACTTGGAAGTCATATCTCTTCAAGTGCGGATTTTAAGTTGATCTTTGGAGGAGATTGGGATAGGGAGCTCAGGCTACCACTCTAGATGCAGCCATGAAATTTTATTGGTGGAGTACACATGACTTCGGCACCCTGTAGTCTTTTTTGACAAGTGAAAGTCGTCATGCTTGGTTAGTGGCTAGGTTATGGAAGGATTTATTCAATTGATTGAAATTAAAAGGAAATATCTTCTAAGCACATCTCGTAGGTGTTTACTTCATAAAAAAAAAAGGTGAGCTATGTGCAGATTGTTAGTGTTTAATAGTGCAACATTGGACCCTTTTTTCTTGATGTTGGCATATACGATAGAGTGGAATGCTTGTGGCTTGTTTATTTTATAGTTGTCGTTGGAATGGGTTTTCTAAGTGATGTCATTGGAATATAGAATTTGGGGGAACATTTGTTCTTTTGAAGGGGCTAAGGTTTGGGCGTTAAGATTTTATGTTATATTATCTGGAGGTAATAGTTCAATTGATCATATTCTTTGGAGCTACAACTTTGCTCGGATAGTTTGGAGTCTCTATCTTGATTTTTTGATTTTCAGTTTGCTACTTATGGGTATAGGGAGATGATCGGAGAGTTCCTTTTCCATCCGCCTTTTCGAGAGAAGAGAGTTTTTGTTGCAAGCGAGATGAATAATAGGACCTCTAGAGAGGTTAGGAGGGACCCAATAAATGTTTGGTCCCTCATTAGGTTCTATGTCTTTCTTCGAGCGTCGGTGATAACATTTTTTTGTTACTATTCTCTAGGTCTTATTGTACTCGATTGTTGCCCCTTTCTTTAGTTGGGTTTCCTTTGGTGGAGATTGGTTTTTTGGATGCCCTTGTACTTTCCTTTACTCATTTATTTTCTGAATGGAAGTTCAGTTCTTTAGTAAGAAAACAGATCCGTTGGATTAAATACCCCCTCCACCCAAAGTCTCTATAAGAAACTGGAAGGCTCAAGTTTATCTTGCCAATCTAGGTTTTCTCGTAGAAACATTGTGAGCACGCTTCTTATTTTCTGCGACCAATCAACTGATTGACGTAGAATTGTTGTGTGGGGAGCTCAATTCATAATATCTGTGGGTGTGGATATGAAAGTCAAAGAATGGTTGTCTATTGTTTCATGTGCTCTTTGGCATGTTTGTCCATGGGAATCTGCTGCAGAGTTCTATTGGCATGCACATGTCTCGTCCCTTTTTTAGTTTTTCTTTCTTGCCTATTTTTTGAACTTTAATTGCCGTAAATTTTTACTACCGAAGTCTCATTAGTTTAAGCATATCCTTGAAACCTACACAAAAAATGATTCATGAGCATCTTTAGCTCCACAGAATATGGTATTCTGTTTATATTTCTCTTAAAATACCGTGTGGCTGGTCTTAGTATTTAGAACAGTTGCAGTTTGGCTGATTTTCTGTCGTAGTTTGTAAATCAGATTATTATTAATTATCATTCATATTACTCATTAAAACTTTAGGGTGAACCTTACAATAATTTAGTTCCTGGATGTTTATTTATTAATTTACCTCTTGCTTAAGTCTTGGGTTCTTTTTCCTGCCAAAGTTAACTGTTCAGACCCCAACATGTTAGGTTCTTTGATAGATGGCCTCTTCTTTAGTTAATGTATCACGTAGAGTGTGCTAATGTCAAAATATAATTTTCTGCAGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAAGTCAATTTTTAAGTTCAAGCTTGTTTTCAAGGAATTTTATGAGAAAACTGTAGTTCCTCAAACTCAAGGAGAATGAATATAGTGTTCACAAGTGTGGATAAATTACATGGTGAATTGAAAAGTTTACTTAGTATCTTATTAGTCGTTGAAGAGTACATATGGTTTGTTTGGAGGGTTTCCATGGGTAGTAGTTCAACTGGTCTATTTTTATGGTCGTTGTCCACTTCGAGCATTGTAAATTTACCCTTAAAGACAATGTAATTTA

mRNA sequence

ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAAGTCAATTTTTAAGTTCAAGCTTGTTTTCAAGGAATTTTATGAGAAAACTGTAGTTCCTCAAACTCAAGGAGAATGAATATAGTGTTCACAAGTGTGGATAAATTACATGGTGAATTGAAAAGTTTACTTAGTATCTTATTAGTCGTTGAAGAGTACATATGGTTTGTTTGGAGGGTTTCCATGGGTAGTAGTTCAACTGGTCTATTTTTATGGTCGTTGTCCACTTCGAGCATTGTAAATTTACCCTTAAAGACAATGTAATTTA

Coding sequence (CDS)

ATGGTGGACTGTGCATCGTCTTGTAGACAGCCAGCAATTGCTTTGCAGCAGCAACAAAATTTGGACATGGCTTCAAATATTCCGAGCCAGCCTACTTGCTTTGGAGGCAAATTGGTGACGGTTGGTTCACAGGGGAAAAGGAAAGCGGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAATGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCGCTACAAGAGCAATTGGGCATTAGCACAAATTCCTGGATCTAA

Protein sequence

MVDCASSCRQPAIALQQQQNLDMASNIPSQPTCFGGKLVTVGSQGKRKAVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSWI
Homology
[Close]
BLAST of Carg22979 vs. NCBI nr
Match: KGN48366.1 (hypothetical protein Csa_6G483465 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 88
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 72

[Close]
BLAST of Carg22979 vs. TrEMBL
Match: tr|A0A0A0KKT8|A0A0A0KKT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 88
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 72

The following BLAST results are available for this feature:
BLAST of Carg22979 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48366.14.6e-1189.74hypothetical protein Csa_6G483465 [Cucumis sativus][more]
BLAST of Carg22979 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22979 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22979 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKT8|A0A0A0KKT8_CUCSA3.0e-1189.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22979-RACarg22979-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22979CmoCh02G004420Cucurbita moschata (Rifu)carcmoB1204
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg22979Watermelon (Charleston Gray)carwcgB0865
Carg22979Watermelon (Charleston Gray)carwcgB0867
Carg22979Watermelon (Charleston Gray)carwcgB0868
Carg22979Watermelon (97103) v1carwmB0893
Carg22979Watermelon (97103) v1carwmB0894
Carg22979Watermelon (97103) v1carwmB0895
Carg22979Watermelon (97103) v2carwmbB0930
Carg22979Watermelon (97103) v2carwmbB0931
Carg22979Wax gourdcarwgoB1036
Carg22979Wax gourdcarwgoB1037
Carg22979Silver-seed gourdcarcarB619
Carg22979Cucumber (Gy14) v2carcgybB0879
Carg22979Cucumber (Gy14) v1carcgyB1011
Carg22979Cucurbita maxima (Rimu)carcmaB1232
Carg22979Cucurbita maxima (Rimu)carcmaB1233
Carg22979Cucurbita pepo (Zucchini)carcpeB1241
Carg22979Cucurbita pepo (Zucchini)carcpeB1243
Carg22979Wild cucumber (PI 183967)carcpiB0926
Carg22979Wild cucumber (PI 183967)carcpiB0927
Carg22979Cucumber (Chinese Long) v2carcuB0906
Carg22979Cucumber (Chinese Long) v2carcuB0907
Carg22979Cucumber (Chinese Long) v3carcucB0929
Carg22979Cucumber (Chinese Long) v3carcucB0930
Carg22979Bottle gourd (USVL1VR-Ls)carlsiB810
Carg22979Bottle gourd (USVL1VR-Ls)carlsiB808
Carg22979Melon (DHL92) v3.5.1carmeB0877
Carg22979Melon (DHL92) v3.5.1carmeB0881
Carg22979Melon (DHL92) v3.6.1carmedB0885
Carg22979Melon (DHL92) v3.6.1carmedB0889