Carg22646-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGAAAGGCTATAATGGAGAGATTGAAGCTTCAAAATTTGTCGACATATGTTTTGTGGTAATTGGGTTCATCAGGGGTTTAGATTGTCAATGTTTGCTGAAGTTCAGTTTGGGAAAGGCCAAGTTTGTGAAAATTAATTAAGGCAGGATTTATGTGCGGATGTATTTAGTGTTCTACTTCATTGAGGGCTTGTAGAGGAAAATATTTGGCTTTTGTTTATGGAAATTGTGGACGCAGGAGAATTATAATTTGTTTTTGTACACAATGGGTGGAGTTTGTTCAAGAACGAGAAGAACTACTTCAGCTGTTATTGGTGGGCATACTGGTGTAGTAGGGGGTTCCACGCATGAAAATGGTCATTCTAACAATGAGTCGGGGATGGTTTATCGGTCTCGTGAACTGCCATCGAAAATTAGTGACTCCATACCGTCTGCTGTTGACGATGGCGTCAATAAGCCGTTGCGAGAACCGTTTTCGTTCCCTGAGGTGAATGTGGTTCCATATGGACTGGATGATATCAATGATGGAATTCCTCGCTTGTCTAGAACGTTATCTCAGAAATCTAGATCAACGAAGTCCAGACAAGCTGTTGCGAAGGTAAAAGCACCTAGGTTTTACTTGCAACTAGAACAGTTTAAGTAAATACTTTTAATTTTTATGAAATTCTGTTTACAGATTAGCAAAAATATTCACAAGGACTGTTTCTTGTATCTTTGTTAAAAAAAATGACTACAAAGAGCGGAACATTTTCGTATGGTTTTTCTTTTTATAGGACAATTTTCATAAAAATTTTCCTCATGAATTTAAACCAAACATCTTATCAAAGGAAAGATAAAGTCGAATATTCTCAATGCGACGCAATGAAGTGTCAAGGTTTATAAGAATTGTTTAATTATGGTGATACCCTTCTTACTCTACCAAGTGTATTTATTTCTTCTGAAATATTCATGCACATGACCTTAATAATTTTCTAACTACCAGAAGGGAGAGTTTACTTTTTGTCTTATGTGCTAGATTTAAATTTGAACCTATGATTTTGTTCTTCCAGGGAACTAGAATCTGATAGACAAATCAACATTATCACATCATTTTTTCTATGTCAACTCAAAAAAATTATATTTGTAATATAGGTATCAGAAATGAGCTCTCTTATAGGCAGAGCAGGTACCGTTGGGCTTGGAAAGGCTGTTGATGTTTTGGATACACTTGGTAGTAGTGTGACGAGTTTGAACCTTGGTAGTGGTTTCACCTCGGGGGTGGCAACGAAAGGGAACAAAATTTTAATCTTAGCTTTTGAAGTTGCCAACACCATTGTGAAGGGTTCTAGTCTAATGCATTCTCTCTCAGAGCATAACATTAGAGTTTTAAAGGAGGAAGTGCTTCCATCAGAAGGGGTCCAAAATTTAATATCAAGAGACATGGATGAACTCTTGAGAATTGCAGCAGCAGACAAGAGGTGGATAGTTTAG TTGAAAGGCTATAATGGAGAGATTGAAGCTTCAAAATTTGTCGACATATGTTTTGTGGAGAATTATAATTTGTTTTTGTACACAATGGGTGGAGTTTGTTCAAGAACGAGAAGAACTACTTCAGCTGTTATTGGTGGGCATACTGGTGTAGTAGGGGGTTCCACGCATGAAAATGGTCATTCTAACAATGAGTCGGGGATGGTTTATCGGTCTCGTGAACTGCCATCGAAAATTAGTGACTCCATACCGTCTGCTGTTGACGATGGCGTCAATAAGCCGTTGCGAGAACCGTTTTCGTTCCCTGAGGTGAATGTGGTTCCATATGGACTGGATGATATCAATGATGGAATTCCTCGCTTGTCTAGAACGTTATCTCAGAAATCTAGATCAACGAAGTCCAGACAAGCTGTTGCGAAGGTATCAGAAATGAGCTCTCTTATAGGCAGAGCAGGTACCGTTGGGCTTGGAAAGGCTGTTGATGTTTTGGATACACTTGGTAGTAGTGTGACGAGTTTGAACCTTGGTAGTGGTTTCACCTCGGGGGTGGCAACGAAAGGGAACAAAATTTTAATCTTAGCTTTTGAAGTTGCCAACACCATTGTGAAGGGTTCTAGTCTAATGCATTCTCTCTCAGAGCATAACATTAGAGTTTTAAAGGAGGAAGTGCTTCCATCAGAAGGGGTCCAAAATTTAATATCAAGAGACATGGATGAACTCTTGAGAATTGCAGCAGCAGACAAGAGGTGGATAGTTTAG TTGAAAGGCTATAATGGAGAGATTGAAGCTTCAAAATTTGTCGACATATGTTTTGTGGAGAATTATAATTTGTTTTTGTACACAATGGGTGGAGTTTGTTCAAGAACGAGAAGAACTACTTCAGCTGTTATTGGTGGGCATACTGGTGTAGTAGGGGGTTCCACGCATGAAAATGGTCATTCTAACAATGAGTCGGGGATGGTTTATCGGTCTCGTGAACTGCCATCGAAAATTAGTGACTCCATACCGTCTGCTGTTGACGATGGCGTCAATAAGCCGTTGCGAGAACCGTTTTCGTTCCCTGAGGTGAATGTGGTTCCATATGGACTGGATGATATCAATGATGGAATTCCTCGCTTGTCTAGAACGTTATCTCAGAAATCTAGATCAACGAAGTCCAGACAAGCTGTTGCGAAGGTATCAGAAATGAGCTCTCTTATAGGCAGAGCAGGTACCGTTGGGCTTGGAAAGGCTGTTGATGTTTTGGATACACTTGGTAGTAGTGTGACGAGTTTGAACCTTGGTAGTGGTTTCACCTCGGGGGTGGCAACGAAAGGGAACAAAATTTTAATCTTAGCTTTTGAAGTTGCCAACACCATTGTGAAGGGTTCTAGTCTAATGCATTCTCTCTCAGAGCATAACATTAGAGTTTTAAAGGAGGAAGTGCTTCCATCAGAAGGGGTCCAAAATTTAATATCAAGAGACATGGATGAACTCTTGAGAATTGCAGCAGCAGACAAGAGGTGGATAGTTTAG LKGYNGEIEASKFVDICFVENYNLFLYTMGGVCSRTRRTTSAVIGGHTGVVGGSTHENGHSNNESGMVYRSRELPSKISDSIPSAVDDGVNKPLREPFSFPEVNVVPYGLDDINDGIPRLSRTLSQKSRSTKSRQAVAKVSEMSSLIGRAGTVGLGKAVDVLDTLGSSVTSLNLGSGFTSGVATKGNKILILAFEVANTIVKGSSLMHSLSEHNIRVLKEEVLPSEGVQNLISRDMDELLRIAAADKRWIV
BLAST of Carg22646-RA vs. NCBI nr
Match: XP_022932530.1 (uncharacterized protein LOC111439029 [Cucurbita moschata]) HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of Carg22646-RA vs. NCBI nr
Match: XP_022976913.1 (uncharacterized protein LOC111477140 [Cucurbita maxima]) HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99 Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Carg22646-RA vs. NCBI nr
Match: XP_023535280.1 (uncharacterized protein LOC111796758 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 371.3 bits (952), Expect = 2.6e-99 Identity = 217/220 (98.64%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Carg22646-RA vs. NCBI nr
Match: XP_008461473.1 (PREDICTED: uncharacterized protein LOC103500062 [Cucumis melo]) HSP 1 Score: 327.8 bits (839), Expect = 3.2e-86 Identity = 185/220 (84.09%), Postives = 189/220 (85.91%), Query Frame = 0
BLAST of Carg22646-RA vs. NCBI nr
Match: XP_004139704.1 (PREDICTED: uncharacterized protein LOC101220504 [Cucumis sativus] >KGN44425.1 hypothetical protein Csa_7G290480 [Cucumis sativus]) HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84 Identity = 182/220 (82.73%), Postives = 185/220 (84.09%), Query Frame = 0
BLAST of Carg22646-RA vs. TAIR10
Match: AT1G34320.1 (Protein of unknown function (DUF668)) HSP 1 Score: 161.0 bits (406), Expect = 9.5e-40 Identity = 109/221 (49.32%), Postives = 130/221 (58.82%), Query Frame = 0
BLAST of Carg22646-RA vs. TAIR10
Match: AT5G08660.1 (Protein of unknown function (DUF668)) HSP 1 Score: 151.8 bits (382), Expect = 5.8e-37 Identity = 95/156 (60.90%), Postives = 114/156 (73.08%), Query Frame = 0
BLAST of Carg22646-RA vs. TAIR10
Match: AT1G30755.1 (Protein of unknown function (DUF668)) HSP 1 Score: 109.8 bits (273), Expect = 2.5e-24 Identity = 60/116 (51.72%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of Carg22646-RA vs. TAIR10
Match: AT3G23160.1 (Protein of unknown function (DUF668)) HSP 1 Score: 48.9 bits (115), Expect = 5.3e-06 Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0
BLAST of Carg22646-RA vs. TrEMBL
Match: tr|A0A1S3CG34|A0A1S3CG34_CUCME (uncharacterized protein LOC103500062 OS=Cucumis melo OX=3656 GN=LOC103500062 PE=4 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 2.1e-86 Identity = 185/220 (84.09%), Postives = 189/220 (85.91%), Query Frame = 0
BLAST of Carg22646-RA vs. TrEMBL
Match: tr|A0A0A0K402|A0A0A0K402_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290480 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 2.0e-84 Identity = 182/220 (82.73%), Postives = 185/220 (84.09%), Query Frame = 0
BLAST of Carg22646-RA vs. TrEMBL
Match: tr|A0A067KHV5|A0A067KHV5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11970 PE=4 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67 Identity = 152/223 (68.16%), Postives = 173/223 (77.58%), Query Frame = 0
BLAST of Carg22646-RA vs. TrEMBL
Match: tr|W9QXD0|W9QXD0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016434 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65 Identity = 153/224 (68.30%), Postives = 173/224 (77.23%), Query Frame = 0
BLAST of Carg22646-RA vs. TrEMBL
Match: tr|A0A1U8K6Z7|A0A1U8K6Z7_GOSHI (uncharacterized protein LOC107914054 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107914054 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 6.7e-64 Identity = 146/224 (65.18%), Postives = 166/224 (74.11%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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