Carg22616-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22616-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H3
Location	Cucurbita_argyrosperma_scaffold_093 : 291849 .. 292136 (-)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

mRNA sequence

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

Coding sequence (CDS)

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL

Homology

[Close]

BLAST of Carg22616-RA vs. NCBI nr
Match: PNI32233.1 (H3F3B isoform 11 [Pan troglodytes])

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616-RA vs. NCBI nr
Match: PNJ87933.1 (H3F3B isoform 4 [Pongo abelii])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI  CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPICVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616-RA vs. NCBI nr
Match: PWA66317.1 (RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein [Artemisia annua])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 74/118 (62.71%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  ---------------CSKILTCVRFM------LRESR--LCLRIFNWPGGLEVRELRE 95
                               T +RF       L+E+R  LC +I +W GGL V+ LR+
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEARLLLCPKICSWLGGLGVKGLRD 118

[Close]

BLAST of Carg22616-RA vs. NCBI nr
Match: KEH16402.1 (histone H3.2 [Medicago truncatula])

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23
Identity = 76/137 (55.47%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  -------------------------------------------CSKILTCVRFMLRESRL 94
                                                      C KI     FMLRE  L
Sbjct: 61  LLIRKLHSNVLFVKSLRISKPISDSRAVLFLLFKKLLKLILLVCLKIQIFALFMLRELLL 120

[Close]

BLAST of Carg22616-RA vs. NCBI nr
Match: AAV65112.1 (histone 3 [Camellia sinensis])

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TAIR10
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TAIR10
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TAIR10
Match: AT5G10390.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TAIR10
Match: AT5G10400.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TAIR10
Match: AT5G65360.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. Swiss-Prot
Match: sp|P59226|H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. Swiss-Prot
Match: sp|Q6LBE3|H32_ASPOF (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. Swiss-Prot
Match: sp|Q6LCK1|H32_BRANA (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. Swiss-Prot
Match: sp|Q71T45|H32_EUPES (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. Swiss-Prot
Match: sp|Q402E1|H32_LILLO (Histone H3.2 OS=Lilium longiflorum OX=4690 GN=YAH3 PE=1 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616-RA vs. TrEMBL
Match: tr|A0A1D5R260|A0A1D5R260_MACMU (Uncharacterized protein OS=Macaca mulatta OX=9544 GN=H3F3B PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKIL CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLVKRTWWVCSKILICVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616-RA vs. TrEMBL
Match: tr|K7EP01|K7EP01_HUMAN (Histone H3.3 OS=Homo sapiens OX=9606 GN=H3F3B PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616-RA vs. TrEMBL
Match: tr|A0A2J8KB34|A0A2J8KB34_PANTR (H3F3B isoform 11 OS=Pan troglodytes OX=9598 GN=CK820_G0039874 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616-RA vs. TrEMBL
Match: tr|A0A1D5R944|A0A1D5R944_MACMU (Uncharacterized protein OS=Macaca mulatta OX=9544 GN=LOC711912 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.9e-25
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVAL EIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALPEIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKIL CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLLRKLPFQRRLAKCTWWVCSKILICVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616-RA vs. TrEMBL
Match: tr|A0A2J8Y104|A0A2J8Y104_PONAB (H3F3B isoform 4 OS=Pongo abelii OX=9601 GN=CR201_G0021391 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI  CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPICVPSTLRESPSCPKTSSWLAGYGGRELK 113

The following BLAST results are available for this feature:

BLAST of Carg22616-RA vs. NCBI nr


Match Name	E-value	Identity	Description
PNI32233.1	3.5e-25	63.72	H3F3B isoform 11 [Pan troglodytes]	[more]
PNJ87933.1	1.7e-24	62.83	H3F3B isoform 4 [Pongo abelii]	[more]
PWA66317.1	1.1e-23	62.71	RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domai...	[more]
KEH16402.1	5.6e-23	55.47	histone H3.2 [Medicago truncatula]	[more]
AAV65112.1	6.9e-21	100.00	histone 3 [Camellia sinensis]	[more]

BLAST of Carg22616-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09200.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT3G27360.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G10390.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G10400.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G65360.1	1.2e-24	100.00	Histone superfamily protein	[more]

BLAST of Carg22616-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P59226\|H32_ARATH	2.2e-23	100.00	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
sp\|Q6LBE3\|H32_ASPOF	2.2e-23	100.00	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
sp\|Q6LCK1\|H32_BRANA	2.2e-23	100.00	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
sp\|Q71T45\|H32_EUPES	2.2e-23	100.00	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
sp\|Q402E1\|H32_LILLO	2.2e-23	100.00	Histone H3.2 OS=Lilium longiflorum OX=4690 GN=YAH3 PE=1 SV=3	[more]

BLAST of Carg22616-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1D5R260\|A0A1D5R260_MACMU	1.4e-25	63.72	Uncharacterized protein OS=Macaca mulatta OX=9544 GN=H3F3B PE=3 SV=1	[more]
tr\|K7EP01\|K7EP01_HUMAN	1.8e-25	63.72	Histone H3.3 OS=Homo sapiens OX=9606 GN=H3F3B PE=1 SV=1	[more]
tr\|A0A2J8KB34\|A0A2J8KB34_PANTR	2.3e-25	63.72	H3F3B isoform 11 OS=Pan troglodytes OX=9598 GN=CK820_G0039874 PE=3 SV=1	[more]
tr\|A0A1D5R944\|A0A1D5R944_MACMU	8.9e-25	62.83	Uncharacterized protein OS=Macaca mulatta OX=9544 GN=LOC711912 PE=3 SV=1	[more]
tr\|A0A2J8Y104\|A0A2J8Y104_PONAB	1.2e-24	62.83	H3F3B isoform 4 OS=Pongo abelii OX=9601 GN=CR201_G0021391 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000164	Histone_H3/CENP-A

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22616	Carg22616	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22616-RA.CDS.1	Carg22616-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22616-RA.exon.1	Carg22616-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22616-RA	Carg22616-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 17..31 score: 92.32 coord: 34..55 score: 89.33 coord: 3..17 score: 97.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..60
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..64 e-value: 3.8E-12 score: 46.6
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..79 e-value: 1.6E-25 score: 91.6
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 2..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11426:SF165	SUBFAMILY NOT NAMED	coord: 1..60