Carg22616 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22616
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H3
Location	Cucurbita_argyrosperma_scaffold_093 : 291849 .. 292136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

mRNA sequence

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

Coding sequence (CDS)

ATGGCTCGCACCAAGCAAACAGCCCGAAAGTCCACCGGCGGTAAGGCTCCTCGTAAGCAATTGGCGACGAAGGCTGCTCGGAAATCGGCTCCGGCGACCGGAGGAGTCAAGAAGCCGCACAGATTCCGTCCAGGGACTGTTGCGCTGAGGGAGATCAGGAAGTACCAGAAGAGCGATTGTTCGAAGATACTAACCTGTGTGCGATTCATGCTAAGAGAGTCACGATTATGCCTAAGGATATTCAATTGGCCAGGCGGATTAGAGGTGAGAGAGCTTAGAGAGCTGTGA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSDCSKILTCVRFMLRESRLCLRIFNWPGGLEVRELREL

Homology

[Close]

BLAST of Carg22616 vs. NCBI nr
Match: PNI32233.1 (H3F3B isoform 11 [Pan troglodytes])

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616 vs. NCBI nr
Match: PNJ87933.1 (H3F3B isoform 4 [Pongo abelii])

HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI  CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPICVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616 vs. NCBI nr
Match: PWA66317.1 (RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein [Artemisia annua])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 74/118 (62.71%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  ---------------CSKILTCVRFM------LRESR--LCLRIFNWPGGLEVRELRE 95
                               T +RF       L+E+R  LC +I +W GGL V+ LR+
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEARLLLCPKICSWLGGLGVKGLRD 118

[Close]

BLAST of Carg22616 vs. NCBI nr
Match: KEH16402.1 (histone H3.2 [Medicago truncatula])

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23
Identity = 76/137 (55.47%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  -------------------------------------------CSKILTCVRFMLRESRL 94
                                                      C KI     FMLRE  L
Sbjct: 61  LLIRKLHSNVLFVKSLRISKPISDSRAVLFLLFKKLLKLILLVCLKIQIFALFMLRELLL 120

[Close]

BLAST of Carg22616 vs. NCBI nr
Match: AAV65112.1 (histone 3 [Camellia sinensis])

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TAIR10
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TAIR10
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TAIR10
Match: AT5G10390.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TAIR10
Match: AT5G10400.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TAIR10
Match: AT5G65360.1 (Histone superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. Swiss-Prot
Match: sp|P59226|H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. Swiss-Prot
Match: sp|Q6LBE3|H32_ASPOF (Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. Swiss-Prot
Match: sp|Q6LCK1|H32_BRANA (Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. Swiss-Prot
Match: sp|Q71T45|H32_EUPES (Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. Swiss-Prot
Match: sp|Q402E1|H32_LILLO (Histone H3.2 OS=Lilium longiflorum OX=4690 GN=YAH3 PE=1 SV=3)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 59
          MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS
Sbjct: 1  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKS 58

[Close]

BLAST of Carg22616 vs. TrEMBL
Match: tr|A0A1D5R260|A0A1D5R260_MACMU (Uncharacterized protein OS=Macaca mulatta OX=9544 GN=H3F3B PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKIL CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLVKRTWWVCSKILICVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616 vs. TrEMBL
Match: tr|K7EP01|K7EP01_HUMAN (Histone H3.3 OS=Homo sapiens OX=9606 GN=H3F3B PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616 vs. TrEMBL
Match: tr|A0A2J8KB34|A0A2J8KB34_PANTR (H3F3B isoform 11 OS=Pan troglodytes OX=9598 GN=CK820_G0039874 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI TCV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPTCVPSTLRESPSCPKTSSWLAGYGGRELK 113

[Close]

BLAST of Carg22616 vs. TrEMBL
Match: tr|A0A1D5R944|A0A1D5R944_MACMU (Uncharacterized protein OS=Macaca mulatta OX=9544 GN=LOC711912 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.9e-25
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVAL EIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALPEIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKIL CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLLRKLPFQRRLAKCTWWVCSKILICVPSTLRESPSCPKTSSWLAGYGERELK 113

[Close]

BLAST of Carg22616 vs. TrEMBL
Match: tr|A0A2J8Y104|A0A2J8Y104_PONAB (H3F3B isoform 4 OS=Pongo abelii OX=9601 GN=CR201_G0021391 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSD- 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKS  
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  -------------------CSKILTCVRFMLRESRLCLRIFNWPGGLEVRELR 94
                              CSKI  CV   LRES  C +  +W  G   REL+
Sbjct: 61  LLIRKLPFQRRLAKRTWWVCSKIPICVPSTLRESPSCPKTSSWLAGYGGRELK 113

The following BLAST results are available for this feature:

BLAST of Carg22616 vs. NCBI nr


Match Name	E-value	Identity	Description
PNI32233.1	3.5e-25	63.72	H3F3B isoform 11 [Pan troglodytes]	[more]
PNJ87933.1	1.7e-24	62.83	H3F3B isoform 4 [Pongo abelii]	[more]
PWA66317.1	1.1e-23	62.71	RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domai...	[more]
KEH16402.1	5.6e-23	55.47	histone H3.2 [Medicago truncatula]	[more]
AAV65112.1	6.9e-21	100.00	histone 3 [Camellia sinensis]	[more]

BLAST of Carg22616 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09200.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT3G27360.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G10390.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G10400.1	1.2e-24	100.00	Histone superfamily protein	[more]
AT5G65360.1	1.2e-24	100.00	Histone superfamily protein	[more]

BLAST of Carg22616 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P59226\|H32_ARATH	2.2e-23	100.00	Histone H3.2 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2	[more]
sp\|Q6LBE3\|H32_ASPOF	2.2e-23	100.00	Histone H3.2 OS=Asparagus officinalis OX=4686 PE=2 SV=3	[more]
sp\|Q6LCK1\|H32_BRANA	2.2e-23	100.00	Histone H3.2 OS=Brassica napus OX=3708 PE=2 SV=3	[more]
sp\|Q71T45\|H32_EUPES	2.2e-23	100.00	Histone H3.2 OS=Euphorbia esula OX=3993 GN=H3 PE=2 SV=3	[more]
sp\|Q402E1\|H32_LILLO	2.2e-23	100.00	Histone H3.2 OS=Lilium longiflorum OX=4690 GN=YAH3 PE=1 SV=3	[more]

BLAST of Carg22616 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1D5R260\|A0A1D5R260_MACMU	1.4e-25	63.72	Uncharacterized protein OS=Macaca mulatta OX=9544 GN=H3F3B PE=3 SV=1	[more]
tr\|K7EP01\|K7EP01_HUMAN	1.8e-25	63.72	Histone H3.3 OS=Homo sapiens OX=9606 GN=H3F3B PE=1 SV=1	[more]
tr\|A0A2J8KB34\|A0A2J8KB34_PANTR	2.3e-25	63.72	H3F3B isoform 11 OS=Pan troglodytes OX=9598 GN=CK820_G0039874 PE=3 SV=1	[more]
tr\|A0A1D5R944\|A0A1D5R944_MACMU	8.9e-25	62.83	Uncharacterized protein OS=Macaca mulatta OX=9544 GN=LOC711912 PE=3 SV=1	[more]
tr\|A0A2J8Y104\|A0A2J8Y104_PONAB	1.2e-24	62.83	H3F3B isoform 4 OS=Pongo abelii OX=9601 GN=CR201_G0021391 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000164	Histone_H3/CENP-A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22616-RA	Carg22616-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 17..31 score: 92.32 coord: 34..55 score: 89.33 coord: 3..17 score: 97.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 1..60
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 15..21
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 1..64 e-value: 3.8E-12 score: 46.6
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..79 e-value: 1.6E-25 score: 91.6
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 2..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR11426:SF165	SUBFAMILY NOT NAMED	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22616	Cla97C08G147440	Watermelon (97103) v2	carwmbB0224
Carg22616	Bhi04G001649	Wax gourd	carwgoB0273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22616	Silver-seed gourd	carcarB093
Carg22616	Cucumber (Gy14) v2	carcgybB0237
Carg22616	Cucumber (Gy14) v1	carcgyB0263
Carg22616	Cucurbita maxima (Rimu)	carcmaB0302
Carg22616	Cucurbita maxima (Rimu)	carcmaB0305
Carg22616	Cucurbita moschata (Rifu)	carcmoB0306
Carg22616	Cucurbita moschata (Rifu)	carcmoB0309
Carg22616	Cucurbita pepo (Zucchini)	carcpeB0310
Carg22616	Cucurbita pepo (Zucchini)	carcpeB0312
Carg22616	Wild cucumber (PI 183967)	carcpiB0253
Carg22616	Cucumber (Chinese Long) v2	carcuB0248
Carg22616	Cucumber (Chinese Long) v3	carcucB0252
Carg22616	Bottle gourd (USVL1VR-Ls)	carlsiB197
Carg22616	Melon (DHL92) v3.6.1	carmedB0233
Carg22616	Watermelon (Charleston Gray)	carwcgB0215
Carg22616	Watermelon (97103) v1	carwmB0208