Carg22508-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22508-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide repeat-like superfamily protein
Location	Cucurbita_argyrosperma_scaffold_156 : 271963 .. 272598 (-)
Sequence length	636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCGGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAGGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA

mRNA sequence

ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCGGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAGGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA

Coding sequence (CDS)

ATGGTGGCCGACATACTTCTTCAAATTGCTCTCATCCTCGTAATGGTCGTCATGTTCTTGGCGATGCATAATATTCCACAGAGATTCTTTGCGAAGCTCCGGTTTCGTTTTCGTTCCGATGTCGAATCCAAACGACACTTCGTGAGAGGCGCTCAGCTTCTCGCTCGAGCAAGATCTGCTCCGTCGCGCTCATCGGCGACGTCGTTGGCGGAACAAGTGGTAGCGGAAGCCGATAAGGCCATCGCTCTCGATCCTAAGGATGCCGCTGCTCACATCCTCAAGGCTTTGGCTCTCGATATTCAAGGATTCAGGACCTCTGCTCTTGAATCACTCGATACGGCTCTGTCGCCCCTCGCCGCTAAGTCGCTCAGCAACGAGGAGCGAGGCGACGCGTTGTACAAACGAGCTGAGTTGAAGATGTCCACGAATCGGCGAACCGTAGTTGACTCGGCTTTGGCTGACTTGACCGAGTCTGTGACGCTGAGTCAGAATGCGAATGCCTATTGTTGGTTGGGGAAATGCTATGAGATGAAGAAACTAAGAGGAGAAGCTAAGAAAGCATATGAAGAAGCGTTGAACATCGAGCCACGATTATCCAAAGCCCGGGAGGCATTGGAACGCCTATCATCATCGTGA

Protein sequence

MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAAKSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKLRGEAKKAYEEALNIEPRLSKAREALERLSSS

Homology

[Close]

BLAST of Carg22508-RA vs. NCBI nr
Match: XP_022951869.1 (uncharacterized protein LOC111454602 [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 1.9e-100
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGF+TSALESLDTALSPLAA
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           RGEAKKAYEEALNIEPRLSKAREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. NCBI nr
Match: XP_023537835.1 (uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 7.4e-100
Identity = 209/211 (99.05%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGF+TSALESLDTALSPLAA
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLSNEERGDALYKRAELKMSTNRR VVDSALADLTESVTLSQNANAYCWLGKCYEMKKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           RGEAKKAYEEALNIEPRLSKAREALERLSSS
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. NCBI nr
Match: XP_023002879.1 (uncharacterized protein LOC111496615 [Cucurbita maxima])

HSP 1 Score: 370.9 bits (951), Expect = 2.8e-99
Identity = 207/211 (98.10%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA
Sbjct: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGF+TSALESLDTALSPLAA
Sbjct: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFKTSALESLDTALSPLAA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLSNEERGDALYKRAELKMSTNRR VVDSA+ADLTESVTLSQNANAYCWLGKCYEMKKL
Sbjct: 121 KSLSNEERGDALYKRAELKMSTNRRAVVDSAMADLTESVTLSQNANAYCWLGKCYEMKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           RGEAKKAYEEALNIEPRLSKAREALERLS+S
Sbjct: 181 RGEAKKAYEEALNIEPRLSKAREALERLSTS 211

[Close]

BLAST of Carg22508-RA vs. NCBI nr
Match: XP_008444918.1 (PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 9.7e-92
Identity = 194/211 (91.94%), Postives = 204/211 (96.68%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+QGF+TSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. NCBI nr
Match: XP_004152601.1 (PREDICTED: uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hypothetical protein Csa_2G370460 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 193/211 (91.47%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGF+TSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. TAIR10
Match: AT5G65520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-34
Identity = 87/196 (44.39%), Postives = 132/196 (67.35%), Query Frame = 0


Query: 4   DILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSAPSR 63
           + ++Q A++++ +VMF A+  + QR   K R + R+ ++++R  ++ ++LLARAR+ P +
Sbjct: 5   ETIIQGAILVLTLVMFWAIKYLSQRGLTKFRTKHRATLQTQRQLIQASRLLARARTTPKK 64

Query: 64  SSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAAKSL 123
           S + SLA+  + EAD  IA+ P DAA HI++ALALD+ G  TSAL+S D AL+    KSL
Sbjct: 65  SQSQSLAKTALTEADNVIAISPDDAAGHIVRALALDLLGHHTSALKSFDMALTYPRLKSL 124

Query: 124 SNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTL---SQNANAYCWLGKCYEMKKL 183
           S  ER DAL KRAE+K++ NRR  +DSA+ DL E+V L   +  A  +  LG+CYE K L
Sbjct: 125 SVGERADALVKRAEMKLAVNRRRRIDSAVEDLEEAVRLAAGTDTARLFRLLGECYEFKGL 184

Query: 184 RGEAKKAYEEALNIEP 197
           + +A+ A+ EAL  +P
Sbjct: 185 KEKAQWAFNEALKAQP 200

[Close]

BLAST of Carg22508-RA vs. TrEMBL
Match: tr|A0A1S3BC86|A0A1S3BC86_CUCME (uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 6.4e-92
Identity = 194/211 (91.94%), Postives = 204/211 (96.68%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD+QGF+TSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDVQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYEMKKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYEMKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. TrEMBL
Match: tr|A0A0A0LPL8|A0A0A0LPL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 9.3e-91
Identity = 193/211 (91.47%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQIALILVMVVMFLAMHNIPQR+FAKLR RFRS+VESKRHFVRGAQLLARARSA
Sbjct: 1   MVTDILLQIALILVMVVMFLAMHNIPQRYFAKLRLRFRSNVESKRHFVRGAQLLARARSA 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
           PSRSSATSLAE+VVAEA+KAIALDPKDAAAHILKALALD QGF+TSALESLDTALSPL A
Sbjct: 61  PSRSSATSLAEEVVAEANKAIALDPKDAAAHILKALALDTQGFKTSALESLDTALSPLVA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLSQNANAYCWLGKCYEMKKL 180
           KSLS+EERGDAL+KRAELKMSTNRR +VDSALADLTESVTLSQNAN+Y WLGKCYE KKL
Sbjct: 121 KSLSDEERGDALFKRAELKMSTNRRALVDSALADLTESVTLSQNANSYYWLGKCYETKKL 180

Query: 181 RGEAKKAYEEALNIEPRLSKAREALERLSSS 212
           R EAKKAYEEALNIEPRLS AREALERLSSS
Sbjct: 181 REEAKKAYEEALNIEPRLSNAREALERLSSS 211

[Close]

BLAST of Carg22508-RA vs. TrEMBL
Match: tr|A0A2P5EWC9|A0A2P5EWC9_9ROSA (N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_143620 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 143/211 (67.77%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQ  LILV +VMFLA+HNIPQ+ +AK R+R R+ V+SKRHFV GAQLLARARSA
Sbjct: 3   MVTDILLQAGLILVSLVMFLALHNIPQKLYAKFRYRNRAQVQSKRHFVLGAQLLARARSA 62

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
            SRS+ TSLA++ +AEA+++IALDPKDAAAHILKAL LD QGF++SA++S+D ALSPLA 
Sbjct: 63  ESRSAVTSLAKEALAEAERSIALDPKDAAAHILKALVLDFQGFKSSAIDSIDAALSPLAV 122

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLS-QNANAYCWLGKCYEMKK 180
           KSL+ +ERGDAL+KRAELK++  RR  VDSALADL E+V LS  NA A+C LG+CYE+KK
Sbjct: 123 KSLTEKERGDALFKRAELKIAMPRRGKVDSALADLGEAVALSPDNARAFCLLGECYEVKK 182

Query: 181 LRGEAKKAYEEALNIEPRLSKAREALERLSS 211
           +  EA+KAYE+AL IEP L  A++ L+RLSS
Sbjct: 183 MEAEARKAYEDALRIEPELGVAQQGLDRLSS 213

[Close]

BLAST of Carg22508-RA vs. TrEMBL
Match: tr|A0A2P5BLU8|A0A2P5BLU8_PARAD (N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_228030 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 9.6e-64
Identity = 142/211 (67.30%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           MV DILLQ  LILV +VMFLA+HNIPQ+ +AK R+R R+ V+SKRHFV GAQLLARARSA
Sbjct: 3   MVTDILLQAVLILVSLVMFLALHNIPQKLYAKFRYRNRAQVQSKRHFVLGAQLLARARSA 62

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
            SRS+AT LA++ +AEA+++I LDPKDAAAHILKAL LD QGF++SA++S+D ALSPLA 
Sbjct: 63  NSRSAATPLAKEALAEAERSIELDPKDAAAHILKALVLDFQGFKSSAIDSIDAALSPLAV 122

Query: 121 KSLSNEERGDALYKRAELKMSTNRRTVVDSALADLTESVTLS-QNANAYCWLGKCYEMKK 180
           KSL+ +ERGDAL+KRAELK++  RR  VDSALADL E+V LS  NA A+C LG+CYE+KK
Sbjct: 123 KSLTEKERGDALFKRAELKIAMPRRGKVDSALADLGEAVALSPDNARAFCLLGECYEVKK 182

Query: 181 LRGEAKKAYEEALNIEPRLSKAREALERLSS 211
           +  EA+KAYE+AL IEP L  A++ L+RLSS
Sbjct: 183 MEAEARKAYEDALRIEPELGVAQQGLDRLSS 213

[Close]

BLAST of Carg22508-RA vs. TrEMBL
Match: tr|A0A0D2S6I8|A0A0D2S6I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G228900 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.0e-60
Identity = 139/212 (65.57%), Postives = 177/212 (83.49%), Query Frame = 0


Query: 1   MVADILLQIALILVMVVMFLAMHNIPQRFFAKLRFRFRSDVESKRHFVRGAQLLARARSA 60
           M  D+LLQ A+ILV + MFLAMH+IP++ F K+R+R R+D ++KRHFV GAQLLA+ARS+
Sbjct: 1   MWTDLLLQAAIILVTIFMFLAMHDIPKKIFTKIRYRNRADFQAKRHFVLGAQLLAQARSS 60

Query: 61  PSRSSATSLAEQVVAEADKAIALDPKDAAAHILKALALDIQGFRTSALESLDTALSPLAA 120
            SRSS  SLA+Q  AEADKAI+LD KDAAA+ILKALALD+QGF+TSAL+SLD ALSP+AA
Sbjct: 61  KSRSSTASLAKQAEAEADKAISLDRKDAAAYILKALALDLQGFKTSALDSLDVALSPIAA 120

Query: 121 KSLSNEERGDALYKRAELKMSTNRR-TVVDSALADLTESVTLS-QNANAYCWLGKCYEMK 180
           KSL+++ERGDAL+KRAELKMS NRR   VDSA+ DLT+++ LS  NA A+C LG+CYEMK
Sbjct: 121 KSLTDKERGDALFKRAELKMSMNRRGGRVDSAIDDLTKALELSGDNAKAFCLLGECYEMK 180

Query: 181 KLRGEAKKAYEEALNIEPRLSKAREALERLSS 211
           K++ EAK A+E+AL +EP  + AR A++RL S
Sbjct: 181 KMKSEAKSAFEKALKVEPTSNVARTAIDRLGS 212

The following BLAST results are available for this feature:

BLAST of Carg22508-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951869.1	1.9e-100	99.53	uncharacterized protein LOC111454602 [Cucurbita moschata]	[more]
XP_023537835.1	7.4e-100	99.05	uncharacterized protein LOC111798743 [Cucurbita pepo subsp. pepo]	[more]
XP_023002879.1	2.8e-99	98.10	uncharacterized protein LOC111496615 [Cucurbita maxima]	[more]
XP_008444918.1	9.7e-92	91.94	PREDICTED: uncharacterized protein LOC103488119 [Cucumis melo]	[more]
XP_004152601.1	1.4e-90	91.47	PREDICTED: uncharacterized protein LOC101214199 [Cucumis sativus] >KGN62747.1 hy...	[more]

BLAST of Carg22508-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65520.1	1.0e-34	44.39	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg22508-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22508-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BC86\|A0A1S3BC86_CUCME	6.4e-92	91.94	uncharacterized protein LOC103488119 OS=Cucumis melo OX=3656 GN=LOC103488119 PE=...	[more]
tr\|A0A0A0LPL8\|A0A0A0LPL8_CUCSA	9.3e-91	91.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370460 PE=4 SV=1	[more]
tr\|A0A2P5EWC9\|A0A2P5EWC9_9ROSA	1.5e-64	67.77	N-terminal acetyltransferase A, auxiliary subunit OS=Trema orientalis OX=63057 G...	[more]
tr\|A0A2P5BLU8\|A0A2P5BLU8_PARAD	9.6e-64	67.30	N-terminal acetyltransferase A, auxiliary subunit OS=Parasponia andersonii OX=34...	[more]
tr\|A0A0D2S6I8\|A0A0D2S6I8_GOSRA	1.0e-60	65.57	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G228900 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22508	Carg22508	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22508-RA.CDS.1	Carg22508-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22508-RA.exon.1	Carg22508-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22508-RA	Carg22508-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 31..145 e-value: 1.6E-6 score: 30.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 146..210 e-value: 2.5E-8 score: 35.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 71..199
None	No IPR available	PANTHER	PTHR26312:SF71	SUBFAMILY NOT NAMED	coord: 3..211
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 3..211
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 165..198 score: 9.234
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 165..198 score: 9.193