Carg22365-RA (mRNA) Silver-seed gourd

Overview
NameCarg22365-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionbromodomain-containing protein 9-like
LocationCucurbita_argyrosperma_scaffold_155 : 16665 .. 18097 (-)
Sequence length735
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGGAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTACGACGATTTTCTTGAAGAAGACGACGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTGAACCAGAGCAGAGACGGAGAGCATCTGTCGCCGGTGGCCAGACTTTCTAGGTCAGGAGCGCGTGGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGTGAAGAAGAGGATGAAGATGAAGATGGAGATGAAAATGAAGATGATGACATTGATGAGGTACTTGAATACAAACAAGATTGATGAACAAGAGACGCATGAGGGCAGAAAGATCACTGAGATGTTTACGCCATTGGCCCAGACTTCAAAATTAGTGTTACCTCTTTTCCATTTCTCAAGCATCCGTTTCACTCTCTCTCTCTCTCTAGGTCTTTTGAGAGGTTTTAAGGATTTTGGGGTCAACTGTCAAAAACTAACACCCCTACAGAATCTGATCACGCTCTCCCACCTTTCTCTCTCCACCACTCACTCACTCACATATCATTCTCTCTCTTTCCTTGTTGTCTGCCTTATCTGTCTCTGTTTCTGTCTCTTTCTCGACTTGTTTATCACTCGTGCTGTATTGCGAATTTATGAGTTTGTTTATATGCCCTTTTATTTGACACAATGGGTTTTGACAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTACAGGTTTGTGTTCTTTTCAATTCAATTTGTGATTCTAGTTTGCAGGTTTATTCCAATTTTGTCTTCTTTTGATCTTTGAGGTTAGTATTTGATTTGGGTTTGTTTAATTTGTGGTGTTCCTTTGATCAGGGACTCCCTCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGTACGGGGAGGAATTGAATCTCTTTTTCTTTTTGATTTTGTTATGATGTGAAATTCCAAGTTCTTAGAATTAATATCTGAAATGATGGCAGGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGGTCTGCAATTTCCCCCTCTTTAAGTGGTTGTTTCAAGTGTTCTTCGGCATCCAAATTTGAAATAATGTTTGTTGTTGTAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGGTGGGTGTCCAATTCTTTGGTTGA

mRNA sequence

ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGGAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTACGACGATTTTCTTGAAGAAGACGACGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTGAACCAGAGCAGAGACGGAGAGCATCTGTCGCCGGTGGCCAGACTTTCTAGGTCAGGAGCGCGTGGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGTGAAGAAGAGGATGAAGATGAAGATGGAGATGAAAATGAAGATGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTACAGGGACTCCCTCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGGTGGGTGTCCAATTCTTTGGTTGA

Coding sequence (CDS)

ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGGAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCATCGGAATCTGAACCGCGACGGAGCCTCCGCAGCCGGAATGTGCGGTACAACATCGATTACGACGATTTTCTTGAAGAAGACGACGAGGATGAGGAAGAGAACGAGAGAAGAAGAGAGAAGAAGCTCAAGCTTGTTGTGAAGCTGAACCAGAGCAGAGACGGAGAGCATCTGTCGCCGGTGGCCAGACTTTCTAGGTCAGGAGCGCGTGGAGAGGACGCGGCGGAGTACGGTTCGTCGGCGTCGGAAGGGGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGAGGTGAAGAAGAGGATGAAGATGAAGATGGAGATGAAAATGAAGATGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCGAAGGGGTCCGACTCTGTTACAGGGACTCCCTCAGATCGATCATCCGGGTTGCCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCTACCGTTAGGAACAAGTTGGCTAACGGATCATATTCAACTTTGGAGCAGTTTGAGGTGGGTGTCCAATTCTTTGGTTGA

Protein sequence

MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEEDDEDEEENERRREKKLKLVVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSASEGEDEPERKPLKKRRIGGGEEEDEDEDGDENEDDDIDEERGRKVGSKGSDSVTGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFEVGVQFFG
Homology
[Close]
BLAST of Carg22365-RA vs. NCBI nr
Match: XP_022940779.1 (uncharacterized protein LOC111446273 [Cucurbita moschata])

HSP 1 Score: 317.4 bits (812), Expect = 4.3e-83
Identity = 235/237 (99.16%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXXX 120
           XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKTL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKVGSKGSDSV GTPSDRSSGLPLPDKKTL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTL 180

Query: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE
Sbjct: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 237

[Close]
BLAST of Carg22365-RA vs. NCBI nr
Match: XP_023523976.1 (uncharacterized protein LOC111788062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 232/237 (97.89%), Postives = 233/237 (98.31%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNID+DDFLEXXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDFDDFLEXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXXX 120
           XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSA XXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSASXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKTL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKVGSKGSDSV GTP DRSSGLPLPDKKTL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKVGSKGSDSVPGTPPDRSSGLPLPDKKTL 180

Query: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE
Sbjct: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 237

[Close]
BLAST of Carg22365-RA vs. NCBI nr
Match: XP_022981385.1 (uncharacterized protein LOC111480522 [Cucurbita maxima] >XP_022981386.1 uncharacterized protein LOC111480522 [Cucurbita maxima])

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 233/237 (98.31%), Postives = 234/237 (98.73%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXXX 120
           XXXXXXXXXXXXXVKLNQSRDGE+LSPVARLSRSGAR EDAAEYGSSAXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXVKLNQSRDGENLSPVARLSRSGARREDAAEYGSSAXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKTL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKVGSKGSDSV GTPSDRSSGLPLPDKKTL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTL 180

Query: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE
Sbjct: 181 ELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 237

[Close]
BLAST of Carg22365-RA vs. NCBI nr
Match: XP_008465638.1 (PREDICTED: bromodomain-containing protein 9-like [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 4.4e-72
Identity = 221/252 (87.70%), Postives = 224/252 (88.89%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLR RNVRYNIDYD    XXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSA--------XXXX 120
           XXXXXXXXXXX  VKLNQ RDG HLSPV  +SR  AR   A EYGSSA        XXXX
Sbjct: 61  XXXXXXXXXXXLVVKLNQGRDGTHLSPVDGVSRLEARDVHAPEYGSSASEXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSV GTPSDRSSGL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVPGTPSDRSSGL 180

Query: 181 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYST 240
           PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVI+HPMDFATVRNKL NGSYST
Sbjct: 181 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLTNGSYST 240

Query: 241 LEQFEVGVQFFG 245
           LEQF+VGV FFG
Sbjct: 241 LEQFQVGVLFFG 252

[Close]
BLAST of Carg22365-RA vs. NCBI nr
Match: XP_022936175.1 (uncharacterized protein LOC111442853 [Cucurbita moschata])

HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70
Identity = 217/254 (85.43%), Postives = 222/254 (87.40%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLR RNVRYN+D+D    XXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNVDFDXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSA------------ 120
           XXXXXXXXXXX  VKLNQ RDG HLSP++RL+RSGAR   A EYGSSA            
Sbjct: 61  XXXXXXXXXXXLVVKLNQGRDGTHLSPMSRLARSGARDAHAPEYGSSASEWEXXXXXXXX 120

Query: 121 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPS 180
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKVGSKGSDSV GTPS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKVGSKGSDSVPGTPS 180

Query: 181 DRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLA 240
           DRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLA
Sbjct: 181 DRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLA 240

[Close]
BLAST of Carg22365-RA vs. TAIR10
Match: AT5G55040.1 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-28
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 169 SSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANG 228
           S   P+ DKK+LELILDKLQKKD YGVYAEPVDPEELPDYHD+IEHPMDF+TVR KLANG
Sbjct: 180 SETTPILDKKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANG 239

Query: 229 SYSTLEQFEVGV 241
           SYSTLE+ E  V
Sbjct: 240 SYSTLEELESDV 251

[Close]
BLAST of Carg22365-RA vs. TAIR10
Match: AT1G20670.1 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-27
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0 

Query: 155 SKGSDSVTGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEH 214
           SK +D + G+P +     PLPDKK L  ILD+LQKKDTYGVY++PVDPEELPDY ++I++
Sbjct: 155 SKATDILQGSPVESGPTTPLPDKKLLLFILDRLQKKDTYGVYSDPVDPEELPDYFEIIKN 214

Query: 215 PMDFATVRNKLANGSYSTLEQFE 238
           PMDF+T+RNKL +G+YSTLEQFE
Sbjct: 215 PMDFSTLRNKLDSGAYSTLEQFE 237

[Close]
BLAST of Carg22365-RA vs. TAIR10
Match: AT1G76380.2 (DNA-binding bromodomain-containing protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-23
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 173 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYST 232
           PLPDKK L  ILD++QKKDTYGVY++P DPEELPDY+++I++PMDF T+R KL +G+Y+T
Sbjct: 143 PLPDKKLLFFILDRVQKKDTYGVYSDPADPEELPDYYEIIKNPMDFTTLRKKLESGAYTT 202

Query: 233 LEQFEVGV 241
           LEQFE  V
Sbjct: 203 LEQFEQDV 210

[Close]
BLAST of Carg22365-RA vs. TAIR10
Match: AT1G32750.1 (HAC13 protein (HAC13))

HSP 1 Score: 52.4 bits (124), Expect = 4.6e-07
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 180  LELILDKLQ-KKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQF 237
            LE I+D L+ K++   ++ +PV  +E PDY D++E+PMD +T+R+K+    Y   EQF
Sbjct: 1807 LERIVDTLRLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQF 1864

[Close]
BLAST of Carg22365-RA vs. TAIR10
Match: AT5G14270.2 (bromodomain and extraterminal domain protein 9)

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-07
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 178 KTLELILDKLQKKDTYGVYAEPVDPEELP--DYHDVIEHPMDFATVRNKLANGSYSTLEQ 237
           K  E +L +L       V+  PVD  +L   DY +VIEHPMD  TV+NKL +G+YS   +
Sbjct: 139 KQCEALLKRLMSHQYGWVFNTPVDVVKLNILDYFNVIEHPMDLGTVKNKLTSGTYSCPSE 198

Query: 238 FEVGVQ 242
           F   V+
Sbjct: 199 FAADVR 204

[Close]
BLAST of Carg22365-RA vs. Swiss-Prot
Match: sp|O95696|BRD1_HUMAN (Bromodomain-containing protein 1 OS=Homo sapiens OX=9606 GN=BRD1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 180 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           L  +LD+LQ KD   ++A+PV  +E+PDY D I+HPMDFAT+R +L    Y  L +FE
Sbjct: 571 LRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFE 628

[Close]
BLAST of Carg22365-RA vs. Swiss-Prot
Match: sp|Q9ULD4|BRPF3_HUMAN (Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens OX=9606 GN=BRPF3 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 174 LPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTL 233
           +P    L   LD LQ+KD   ++AEPV+  E+PDY + I  PMDF+T+R KL +  Y TL
Sbjct: 592 MPFNVLLRTTLDLLQEKDPAHIFAEPVNLSEVPDYLEFISKPMDFSTMRRKLESHLYRTL 651

Query: 234 EQFE 238
           E+FE
Sbjct: 652 EEFE 655

[Close]
BLAST of Carg22365-RA vs. Swiss-Prot
Match: sp|B7ZS37|BAZ2A_XENLA (Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus laevis OX=8355 GN=baz2a PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 175  PDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLE 234
            PD    E+IL +L+  +    + EPV+P  +P Y  +I++PMDF+T+R+KL NG+YS  E
Sbjct: 1589 PDLTFCEIILMELESHEDAWPFLEPVNPRLVPGYRKIIKNPMDFSTMRHKLLNGNYSRCE 1648

Query: 235  QF 237
            +F
Sbjct: 1649 EF 1650

[Close]
BLAST of Carg22365-RA vs. Swiss-Prot
Match: sp|Q7ZUF2|BRD9_DANRE (Bromodomain-containing protein 9 OS=Danio rerio OX=7955 GN=brd9 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 175 PDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLE 234
           P ++ LE  L  LQ+KD +G +A PV     P Y  +I+HPMDF+T+++K+A   Y T+ 
Sbjct: 170 PHQQLLEHFLRLLQRKDAHGFFAFPVTDAIAPGYSMIIKHPMDFSTMKDKIAANEYKTIT 229

Query: 235 QFE 238
           +F+
Sbjct: 230 EFK 232

[Close]
BLAST of Carg22365-RA vs. Swiss-Prot
Match: sp|Q9UUK2|GCN5_SCHPO (Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gcn5 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-08
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 173 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYST 232
           P P    LE++  ++Q   +   + +PV  E++PDY++VIEHPMD +T+  +L N  Y +
Sbjct: 345 PKPFFAVLEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYES 404

Query: 233 LEQF 237
           +E+F
Sbjct: 405 VEEF 408

[Close]
BLAST of Carg22365-RA vs. TrEMBL
Match: tr|A0A1S3CPQ8|A0A1S3CPQ8_CUCME (bromodomain-containing protein 9-like OS=Cucumis melo OX=3656 GN=LOC103503278 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.9e-72
Identity = 221/252 (87.70%), Postives = 224/252 (88.89%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLR RNVRYNIDYD    XXXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSA--------XXXX 120
           XXXXXXXXXXX  VKLNQ RDG HLSPV  +SR  AR   A EYGSSA        XXXX
Sbjct: 61  XXXXXXXXXXXLVVKLNQGRDGTHLSPVDGVSRLEARDVHAPEYGSSASEXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSV GTPSDRSSGL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVPGTPSDRSSGL 180

Query: 181 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYST 240
           PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVI+HPMDFATVRNKL NGSYST
Sbjct: 181 PLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLTNGSYST 240

Query: 241 LEQFEVGVQFFG 245
           LEQF+VGV FFG
Sbjct: 241 LEQFQVGVLFFG 252

[Close]
BLAST of Carg22365-RA vs. TrEMBL
Match: tr|A0A0A0K3T1|A0A0A0K3T1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212100 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 205/243 (84.36%), Postives = 211/243 (86.83%), Query Frame = 0 

Query: 6   KRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXXXXXXX 65
           KR++  R  + +LARRSGGGLTSSESEPRRSLR RNVRYNIDYD    XXXXXXXXXXXX
Sbjct: 17  KRERNDREIRENLARRSGGGLTSSESEPRRSLRRRNVRYNIDYDXXXXXXXXXXXXXXXX 76

Query: 66  XXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSA--------XXXXXXXXX 125
           XXXXXXX VKLNQ RDG HLSPV  +SR  AR   A EYGSSA        XXXXXXXXX
Sbjct: 77  XXXXXXXVVKLNQGRDGTHLSPVDGVSRLEARDLHAPEYGSSASEXXXXXXXXXXXXXXX 136

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDK 185
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSV GTPSDRSSGLPLPDK
Sbjct: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVPGTPSDRSSGLPLPDK 196

Query: 186 KTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 241
           KTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVI+HPMDFATVRNKLANGSYSTLEQFE
Sbjct: 197 KTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRNKLANGSYSTLEQFE 256

[Close]
BLAST of Carg22365-RA vs. TrEMBL
Match: tr|A0A2I4EYI3|A0A2I4EYI3_9ROSI (uncharacterized protein LOC108993865 isoform X1 OS=Juglans regia OX=51240 GN=LOC108993865 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.3e-48
Identity = 167/238 (70.17%), Postives = 177/238 (74.37%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLE-XXXXXX 60
           MGQIVKRKKKGRPSKADLARR+     + E + RRSLR RNVRYNIDYDD+L+ XXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRAVESAAAPEPDIRRSLRRRNVRYNIDYDDYLDXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXX 120
           XXXXXXXXXXXXX VKLNQ    E  S    ++R     ED  E                
Sbjct: 61  XXXXXXXXXXXXXVVKLNQG--SESPSRAHTVARDSHASEDECE-----------RKPLK 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKT 180
                  XXXXXXXXXXXXXXXXXXXXXXX RKV  K  DS  GTP+D  SG+PLPDKKT
Sbjct: 121 KRSISNGXXXXXXXXXXXXXXXXXXXXXXXGRKVDLKELDSAPGTPTDPRSGVPLPDKKT 180

Query: 181 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           LELILDKLQKKDTYGVYAEPVDPEELPDYHDVI+HPMDFATVR KLANGSYSTLEQFE
Sbjct: 181 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRKKLANGSYSTLEQFE 225

[Close]
BLAST of Carg22365-RA vs. TrEMBL
Match: tr|A0A2I4EYI6|A0A2I4EYI6_9ROSI (uncharacterized protein LOC108993865 isoform X2 OS=Juglans regia OX=51240 GN=LOC108993865 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.3e-48
Identity = 167/238 (70.17%), Postives = 177/238 (74.37%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLE-XXXXXX 60
           MGQIVKRKKKGRPSKADLARR+     + E + RRSLR RNVRYNIDYDD+L+ XXXXXX
Sbjct: 1   MGQIVKRKKKGRPSKADLARRAVESAAAPEPDIRRSLRRRNVRYNIDYDDYLDXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXVKLNQSRDGEHLSPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXX 120
           XXXXXXXXXXXXX VKLNQ    E  S    ++R     ED  E                
Sbjct: 61  XXXXXXXXXXXXXVVKLNQG--SESPSRAHTVARDSHASEDECE-----------RKPLK 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKT 180
                  XXXXXXXXXXXXXXXXXXXXXXX RKV  K  DS  GTP+D  SG+PLPDKKT
Sbjct: 121 KRSISNGXXXXXXXXXXXXXXXXXXXXXXXGRKVDLKELDSAPGTPTDPRSGVPLPDKKT 180

Query: 181 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFE 238
           LELILDKLQKKDTYGVYAEPVDPEELPDYHDVI+HPMDFATVR KLANGSYSTLEQFE
Sbjct: 181 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRKKLANGSYSTLEQFE 225

[Close]
BLAST of Carg22365-RA vs. TrEMBL
Match: tr|A5BEU9|A5BEU9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007685 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.8e-45
Identity = 155/241 (64.32%), Postives = 167/241 (69.29%), Query Frame = 0 

Query: 1   MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRSRNVRYNIDYDDFLEXXXXXXX 60
           M QIVKRKKKGRPSK+DLARRS       E + RRS R R+VRYNIDYDDF+ XXXXXXX
Sbjct: 1   MVQIVKRKKKGRPSKSDLARRSTAEGAQPERDLRRSHRRRSVRYNIDYDDFVXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXVKLNQSRDGEHL-SPVARLSRSGARGEDAAEYGSSAXXXXXXXXXXX 120
           XXXXXXXXXXXXX        GE   S   R          ++EYG+         XXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXAGESAPSGTRRDENESGVSASSSEYGNKPLKKRRIDXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVGSKGSDSVTGTPSDRSSGLPLPDKKT 180
           XXXXXXXXXXXXXXX                RK  SKG DSV GTP++ SSG+PLPDKK+
Sbjct: 121 XXXXXXXXXXXXXXXVNDCTDLEAGKCEERGRKADSKGMDSVLGTPAEVSSGIPLPDKKS 180

Query: 181 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSTLEQFEVG 240
           LELILDKLQKKD YGVYAEPVDPEELPDYHDVIEHPMDFATVR KL NGSY T E+FE  
Sbjct: 181 LELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLGNGSYRTFEEFESD 240

The following BLAST results are available for this feature:
BLAST of Carg22365-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940779.14.3e-8399.16uncharacterized protein LOC111446273 [Cucurbita moschata][more]
XP_023523976.14.7e-8297.89uncharacterized protein LOC111788062 [Cucurbita pepo subsp. pepo][more]
XP_022981385.12.3e-8198.31uncharacterized protein LOC111480522 [Cucurbita maxima] >XP_022981386.1 uncharac... [more]
XP_008465638.14.4e-7287.70PREDICTED: bromodomain-containing protein 9-like [Cucumis melo][more]
XP_022936175.11.9e-7085.43uncharacterized protein LOC111442853 [Cucurbita moschata][more]
BLAST of Carg22365-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT5G55040.14.8e-2880.56DNA-binding bromodomain-containing protein[more]
AT1G20670.15.3e-2765.06DNA-binding bromodomain-containing protein[more]
AT1G76380.23.5e-2367.65DNA-binding bromodomain-containing protein[more]
AT1G32750.14.6e-0741.38HAC13 protein (HAC13)[more]
AT5G14270.26.1e-0742.42bromodomain and extraterminal domain protein 9[more]
BLAST of Carg22365-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O95696|BRD1_HUMAN1.6e-0950.00Bromodomain-containing protein 1 OS=Homo sapiens OX=9606 GN=BRD1 PE=1 SV=1[more]
sp|Q9ULD4|BRPF3_HUMAN1.6e-0948.44Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens OX=9606 GN=BRPF3... [more]
sp|B7ZS37|BAZ2A_XENLA2.4e-0843.55Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus laevis OX=8355 ... [more]
sp|Q7ZUF2|BRD9_DANRE9.0e-0841.27Bromodomain-containing protein 9 OS=Danio rerio OX=7955 GN=brd9 PE=2 SV=1[more]
sp|Q9UUK2|GCN5_SCHPO9.0e-0837.50Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
BLAST of Carg22365-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CPQ8|A0A1S3CPQ8_CUCME2.9e-7287.70bromodomain-containing protein 9-like OS=Cucumis melo OX=3656 GN=LOC103503278 PE... [more]
tr|A0A0A0K3T1|A0A0A0K3T1_CUCSA3.0e-6184.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212100 PE=4 SV=1[more]
tr|A0A2I4EYI3|A0A2I4EYI3_9ROSI2.3e-4870.17uncharacterized protein LOC108993865 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2I4EYI6|A0A2I4EYI6_9ROSI2.3e-4870.17uncharacterized protein LOC108993865 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A5BEU9|A5BEU9_VITVI6.8e-4564.32Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007685 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg22365Carg22365gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg22365-RACarg22365-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22365-RA.CDS.5Carg22365-RA.CDS.5CDS
Carg22365-RA.CDS.4Carg22365-RA.CDS.4CDS
Carg22365-RA.CDS.3Carg22365-RA.CDS.3CDS
Carg22365-RA.CDS.2Carg22365-RA.CDS.2CDS
Carg22365-RA.CDS.1Carg22365-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg22365-RA.exon.5Carg22365-RA.exon.5exon
Carg22365-RA.exon.4Carg22365-RA.exon.4exon
Carg22365-RA.exon.3Carg22365-RA.exon.3exon
Carg22365-RA.exon.2Carg22365-RA.exon.2exon
Carg22365-RA.exon.1Carg22365-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 221..239
score: 23.8
coord: 205..221
score: 48.34
coord: 191..204
score: 22.2
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 182..237
e-value: 1.2E-14
score: 54.1
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 188..244
score: 13.824
IPR036427Bromodomain-like superfamilyGENE3DG3DSA:1.20.920.10coord: 174..242
e-value: 2.1E-21
score: 77.7
IPR036427Bromodomain-like superfamilySUPERFAMILYSSF47370Bromodomaincoord: 158..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR22881:SF29DNA-BINDING BROMODOMAIN-CONTAINING PROTEINcoord: 1..237
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 1..237