Carg22101-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22101-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	O-glucosyltransferase rumi homolog
Location	Cucurbita_argyrosperma_scaffold_229 : 97054 .. 97537 (+)
Sequence length	375

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAAGTCAAATTTCGCCGGACCACCTCTCCTCCGCCCACTGTCAACTGCGCCGGTGGGCCTGAAGCTGAAGAGTCGCAACGTTAAACAATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGTAAGTTTCTTAATGCATAATAGTATTTTAAAAAAATTCCTTTTTTTTTTTTTTTTTTTTTGTCTAAATTCCGGAAATTAAGGAGGATTTTATTGATTTCAGAGGGCAGGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

mRNA sequence

CGACAAGTCAAATTTCGCCGGACCACCTCTCCTCCGCCCACTGTCAACTGCGCCGGTGGGCCTGAAGCTGAAGAGTCGCAACGTTAAACAATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

Coding sequence (CDS)

ATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

Protein sequence

MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSNGVILEGATTLPKYRKCHSDDDKSNSHSIARPSIT

Homology

[Close]

BLAST of Carg22101-RA vs. NCBI nr
Match: XP_022944810.1 (protein O-glucosyltransferase 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101-RA vs. NCBI nr
Match: XP_022944811.1 (O-glucosyltransferase rumi homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101-RA vs. NCBI nr
Match: XP_022968465.1 (O-glucosyltransferase rumi homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYA+WVSRHFSDHLLKPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYAAWVSRHFSDHLLKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101-RA vs. NCBI nr
Match: XP_022968464.1 (protein O-glucosyltransferase 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYA+WVSRHFSDHLLKPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYAAWVSRHFSDHLLKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101-RA vs. NCBI nr
Match: XP_023541706.1 (LOW QUALITY PROTEIN: O-glucosyltransferase rumi homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHL KPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLFKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101-RA vs. TrEMBL
Match: tr|A0A1S3AYX8|A0A1S3AYX8_CUCME (O-glucosyltransferase rumi homolog OS=Cucumis melo OX=3656 GN=LOC103484079 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  AGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLV-LFFSLFLLAGAFLSTRLLDSN 61
          + F  RFS+YAS     FSDH+ KP +KSPA FSL+ LFFSLFLLAG FLSTRLL S+
Sbjct: 7  SSFLNRFSHYAS-----FSDHIFKPFIKSPATFSLLFLFFSLFLLAGIFLSTRLLHSS 59

[Close]

BLAST of Carg22101-RA vs. TrEMBL
Match: tr|A0A0A0L5W3|A0A0A0L5W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182110 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 6  FHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLV-LFFSLFLLAGAFLSTRLLDSN---- 65
          F  RFS+YA      F DH+ KP +KSPA FSL+ LFFSLFLLAG FLSTRLL S+    
Sbjct: 9  FRNRFSHYA-----FFPDHIFKPFIKSPATFSLLFLFFSLFLLAGVFLSTRLLHSSTTAY 68

Query: 66 GVILEGATTLPKYRKCHSDDDKSNSHSIARPSI 94
           + ++G+     Y    S    + +H   RP +
Sbjct: 69 NLTIKGSGKSQYYPTNTSQVPHNPNHQPRRPQV 96

The following BLAST results are available for this feature:

BLAST of Carg22101-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944810.1	3.0e-24	100.00	protein O-glucosyltransferase 1 isoform X1 [Cucurbita moschata]	[more]
XP_022944811.1	3.0e-24	100.00	O-glucosyltransferase rumi homolog isoform X2 [Cucurbita moschata]	[more]
XP_022968465.1	8.6e-24	96.67	O-glucosyltransferase rumi homolog isoform X2 [Cucurbita maxima]	[more]
XP_022968464.1	8.6e-24	96.67	protein O-glucosyltransferase 1 isoform X1 [Cucurbita maxima]	[more]
XP_023541706.1	1.1e-23	96.67	LOW QUALITY PROTEIN: O-glucosyltransferase rumi homolog [Cucurbita pepo subsp. p...	[more]

BLAST of Carg22101-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22101-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22101-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYX8\|A0A1S3AYX8_CUCME	2.2e-07	65.52	O-glucosyltransferase rumi homolog OS=Cucumis melo OX=3656 GN=LOC103484079 PE=4 ...	[more]
tr\|A0A0A0L5W3\|A0A0A0L5W3_CUCSA	8.2e-07	45.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22101	Carg22101	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22101-RA.exon.1	Carg22101-RA.exon.1	exon
Carg22101-RA.exon.2	Carg22101-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22101-RA.five_prime_UTR.1	Carg22101-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22101-RA.CDS.1	Carg22101-RA.CDS.1	CDS
Carg22101-RA.CDS.2	Carg22101-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22101-RA	Carg22101-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94