Carg22101 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22101
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	O-glucosyltransferase rumi homolog
Location	Cucurbita_argyrosperma_scaffold_229 : 97054 .. 97537 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAAGTCAAATTTCGCCGGACCACCTCTCCTCCGCCCACTGTCAACTGCGCCGGTGGGCCTGAAGCTGAAGAGTCGCAACGTTAAACAATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGTAAGTTTCTTAATGCATAATAGTATTTTAAAAAAATTCCTTTTTTTTTTTTTTTTTTTTTGTCTAAATTCCGGAAATTAAGGAGGATTTTATTGATTTCAGAGGGCAGGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

mRNA sequence

CGACAAGTCAAATTTCGCCGGACCACCTCTCCTCCGCCCACTGTCAACTGCGCCGGTGGGCCTGAAGCTGAAGAGTCGCAACGTTAAACAATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

Coding sequence (CDS)

ATGAGGGACGCCGGATTCCACCAGAGGTTTTCAAATTATGCCTCTTGGGTCTCTCGCCACTTCTCAGATCATCTCTTGAAGCCATCTCTCAAATCTCCGGCGAGATTCTCTCTCGTTCTCTTCTTCTCTCTCTTCCTCCTCGCCGGCGCGTTCCTCTCCACGCGTCTCCTCGATTCAAATGGGGTAATTTTAGAGGGAGCAACAACACTTCCCAAATACCGAAAATGCCACTCCGACGACGACAAGTCGAATTCCCACTCGATTGCACGTCCTTCAATAACGTGA

Protein sequence

MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSNGVILEGATTLPKYRKCHSDDDKSNSHSIARPSIT

Homology

[Close]

BLAST of Carg22101 vs. NCBI nr
Match: XP_022944810.1 (protein O-glucosyltransferase 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101 vs. NCBI nr
Match: XP_022944811.1 (O-glucosyltransferase rumi homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101 vs. NCBI nr
Match: XP_022968465.1 (O-glucosyltransferase rumi homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYA+WVSRHFSDHLLKPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYAAWVSRHFSDHLLKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101 vs. NCBI nr
Match: XP_022968464.1 (protein O-glucosyltransferase 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYA+WVSRHFSDHLLKPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYAAWVSRHFSDHLLKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101 vs. NCBI nr
Match: XP_023541706.1 (LOW QUALITY PROTEIN: O-glucosyltransferase rumi homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1  MRDAGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLVLFFSLFLLAGAFLSTRLLDSN 60
          MRDAGFHQRFSNYASWVSRHFSDHL KPSLKSPARFSL+LFFSLFLLAGAFLSTRLLDSN
Sbjct: 1  MRDAGFHQRFSNYASWVSRHFSDHLFKPSLKSPARFSLILFFSLFLLAGAFLSTRLLDSN 60

[Close]

BLAST of Carg22101 vs. TrEMBL
Match: tr|A0A1S3AYX8|A0A1S3AYX8_CUCME (O-glucosyltransferase rumi homolog OS=Cucumis melo OX=3656 GN=LOC103484079 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  AGFHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLV-LFFSLFLLAGAFLSTRLLDSN 61
          + F  RFS+YAS     FSDH+ KP +KSPA FSL+ LFFSLFLLAG FLSTRLL S+
Sbjct: 7  SSFLNRFSHYAS-----FSDHIFKPFIKSPATFSLLFLFFSLFLLAGIFLSTRLLHSS 59

[Close]

BLAST of Carg22101 vs. TrEMBL
Match: tr|A0A0A0L5W3|A0A0A0L5W3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182110 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 6  FHQRFSNYASWVSRHFSDHLLKPSLKSPARFSLV-LFFSLFLLAGAFLSTRLLDSN---- 65
          F  RFS+YA      F DH+ KP +KSPA FSL+ LFFSLFLLAG FLSTRLL S+    
Sbjct: 9  FRNRFSHYA-----FFPDHIFKPFIKSPATFSLLFLFFSLFLLAGVFLSTRLLHSSTTAY 68

Query: 66 GVILEGATTLPKYRKCHSDDDKSNSHSIARPSI 94
           + ++G+     Y    S    + +H   RP +
Sbjct: 69 NLTIKGSGKSQYYPTNTSQVPHNPNHQPRRPQV 96

The following BLAST results are available for this feature:

BLAST of Carg22101 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944810.1	3.0e-24	100.00	protein O-glucosyltransferase 1 isoform X1 [Cucurbita moschata]	[more]
XP_022944811.1	3.0e-24	100.00	O-glucosyltransferase rumi homolog isoform X2 [Cucurbita moschata]	[more]
XP_022968465.1	8.6e-24	96.67	O-glucosyltransferase rumi homolog isoform X2 [Cucurbita maxima]	[more]
XP_022968464.1	8.6e-24	96.67	protein O-glucosyltransferase 1 isoform X1 [Cucurbita maxima]	[more]
XP_023541706.1	1.1e-23	96.67	LOW QUALITY PROTEIN: O-glucosyltransferase rumi homolog [Cucurbita pepo subsp. p...	[more]

BLAST of Carg22101 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22101 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22101 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYX8\|A0A1S3AYX8_CUCME	2.2e-07	65.52	O-glucosyltransferase rumi homolog OS=Cucumis melo OX=3656 GN=LOC103484079 PE=4 ...	[more]
tr\|A0A0A0L5W3\|A0A0A0L5W3_CUCSA	8.2e-07	45.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182110 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22101-RA	Carg22101-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22101	CmaCh18G012470	Cucurbita maxima (Rimu)	carcmaB1032
Carg22101	CmoCh18G012700	Cucurbita moschata (Rifu)	carcmoB1003
Carg22101	Cp4.1LG09g00970	Cucurbita pepo (Zucchini)	carcpeB1038

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22101	Cucumber (Gy14) v1	carcgyB0828
Carg22101	Cucurbita maxima (Rimu)	carcmaB1031
Carg22101	Cucurbita moschata (Rifu)	carcmoB1002
Carg22101	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22101	Wild cucumber (PI 183967)	carcpiB0771
Carg22101	Cucumber (Chinese Long) v2	carcuB0754
Carg22101	Cucumber (Chinese Long) v3	carcucB0774
Carg22101	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22101	Melon (DHL92) v3.5.1	carmeB0732
Carg22101	Melon (DHL92) v3.6.1	carmedB0743
Carg22101	Watermelon (Charleston Gray)	carwcgB0715
Carg22101	Watermelon (97103) v1	carwmB0736
Carg22101	Watermelon (97103) v2	carwmbB0772
Carg22101	Watermelon (97103) v2	carwmbB0773
Carg22101	Wax gourd	carwgoB0871
Carg22101	Wax gourd	carwgoB0872
Carg22101	Silver-seed gourd	carcarB583
Carg22101	Silver-seed gourd	carcarB594
Carg22101	Cucumber (Gy14) v2	carcgybB0733