Carg22092-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTGCTTTGCAATTGCGGCAATCGGGAGAAATTGGGAGTCTGAGACAGAATTTTGGTCTACTTTCAGACGGTGGGAGCTCGTCTTTGCTGCACTGAAAGGTAAAGCCCTGCACTACCGCCACTTCTTTCACTAATCCCTTCTTTAATACACTTTGAATCCGACTTTATATCTGTTTTATCGATCCGAATTTGTAATGGGTTTCAATTAAATTTGCATCAGATTGCCTGATCTGATTCATTTACGGCTTCGATCGCCAAAAATCAACTGGGTATTTTTCCATTTCCATTTTTGTTTATGATGGAATTCTCTTGTGTTTCATTGCAATTGTTTCGGGTCGCTCGATGTTTGATCTTTCCTATTGCAATGTTTTGAGTAACACGGATTCTCGTATGAAGTTGATTTCGATTCTTATTGTGTGTCTTTTGCTCCTCATTTCCACCCTCGATGGTGCATATGGTTTGCCATTTGGAATATGGTGGACGATAATTTTGCTTTGAATCGCCTCTGAAAAGATTTCTCGGCTTGTAGAAACGATTTTATGAAACGGTGTATAGAACCCCTTTTTTATACGAAGCTATGAATGAGCAAGGGAGTGTGTTATTGTATTTTCTTTCGTTTTCTTCCCCCATGACAACATTTCTATGGAGGTTGCTTTTGAAATCCTGTGATGTTTTAACACCAAGCTTGGATTGTTCTTCTTATGTCTGAACTTTCATTGACTTTGCAAAAGCTTTGCAGATTTTCTTGAGTTTCTAAATTTGAGCTATAATTTGAATTCTCATGGAACCGGACTTAATGGATAGGAGAAGAGACAGTAAGTTTAAAAATAAATTACCCTTCATTTGGATTTTAATTATGGAGAAGGTTGATGATTTAAGAGAGTTCATATTTGCGTTGAAGTGAAATCTTTCATGAGTTTGTTGAATCTTAAGTTTATCATATTATTTGAACCTCTAACTTCTTGGTAGAGGGTACTTTTTGTTGAAATGTAATTGAAGTTCTTAGAAGTTAATGAACCATAATTAGGAGGTTAAAATGAAATCAATTCTGGTTAAGAGAGATTCATGCTGAATGGTATATAATTTGTCACATCTATTATGTTTAATGAATTCTCTGAGCTGCCTCCCTGTTTCTCTCTAGAACAATATGTTTAGGGGAGCGAGGGGCGATTACCGATGCAAAACTATTTTAAAGTGGAATGATCTTTAGTTTGATTTACTGTTCTATCCAAGGAAGTCATCTCTATTCTGTTTGTGGAGTTGCAGAATAAGTTGGCCAAAGGAGAGTTTGAAGTTATGAAGTTTGATCCCAAGGGTTAAGAGCAACTAATACCCCAAGTAAACTGAAAAGACACGATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAATTTCATGTTCTCATCCTAGGAATCGACAAGGCGGGGAAAACGGTAAACCTCTTCCCTCTTGACTGATTGTACATAGTTATTTCTTCAAAGTTTACGCTATGTTTTCAGCTCCTTTCTAGGCTTGCTAACTTCTTTCCATTCACTTTTAACTTTGTCGTGTAGACTTTGCTTGAGAAGTTGAAGTCATTATACTCGAACTTGGAAGGTCTATCCCCTGATCGGATTGTTCCAACCGTTGGACTCAATATTGGGCGTCTAGAGGTGTTGAATGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGGTATGGATATGTAACGAACAATGGTGTTGTAATATAGATTTTTTAAGTACAATGCATACATGTGTCGCTTTTGGCTGAACCCTTCGTGCCAAGCATGCTGTAAACCCACATATTATAGCTGATATTTAAGTTGCTAGATTGTAACAGCCCAAGCCCACCGCTAATAGATATTGGCTACTATCGCCGTCAGCCTCAGAATTTTAAAACATGTCTATTAGGGAGAGGTTTCCACACCCTTATAAGAAATGCTTCATTCTCCTCTCTAACCGATGTAGGATCTCACGATCCACTCCCCTTGGGGGCCAGCGTCCTCACTGGCACACCGCCTAGTGTCTAACTCTGATAGATACCATTTGTAACAGCCTAAGCCCACTACTAGTAGATATTGTCTGCTTTGGCCCGTTACGTATTGCCGTCAGTCTCACAGTTTTAAAATGTGTCTGTTAGGGAGAAGTTTCCACACCCTTATAAGAAATGCTTCGTTTTCCTCCCCAACCGACGTGGGATCTCACACAAAATCTGTTGTTGCTAGCTTTCTTTATACTAAATACATTATCTAAAGTCTTAAAGAGTTTTGTAGAATCTTGTTCCTCTCTCTTACATTTTTGTTTTGTGGGTGGGAATTTGAATGTGTTATTTATCTCAGTTTTTTCCCCCTTTTTGAATTATTGCAGCCTGGCCTTCGGTCTATTTGGGAGAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATCGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCACTGGGTAGGTGATGCCATAGTGTGGCCATACCTTAATTATGTTGGTATCAGCAGTGATAGAACTTGAATATGATGCATTGATATTATTTTGAATTTCTTTCCCAGAGAAAGTTCTTCGACACGAGGATCTGCAAGGAGCTCCACTTTTGGTTTTAGCAAACAAGCAGGTGAGAACCAGTGATGATTCAATCATAAATTGGAAAACAAATGAGATCAAGTTGTATTGTTGA ATTGCTTTGCAATTGCGGCAATCGGGAGAAATTGGGAGTCTGAGACAGAATTTTGGTCTACTTTCAGACGGTGGGAGCTCGTCTTTGCTGCACTGAAAGAATAAGTTGGCCAAAGGAGAGTTTGAAGTTATGAAGTTTGATCCCAAGGGTTAAGAGCAACTAATACCCCAAGTAAACTGAAAAGACACGATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAATTTCATGTTCTCATCCTAGGAATCGACAAGGCGGGGAAAACGACTTTGCTTGAGAAGTTGAAGTCATTATACTCGAACTTGGAAGGTCTATCCCCTGATCGGATTGTTCCAACCGTTGGACTCAATATTGGGCGTCTAGAGGTGTTGAATGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGCCTGGCCTTCGGTCTATTTGGGAGAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATCGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCACTGGAGAAAGTTCTTCGACACGAGGATCTGCAAGGAGCTCCACTTTTGGTTTTAGCAAACAAGCAGGTGAGAACCAGTGATGATTCAATCATAAATTGGAAAACAAATGAGATCAAGTTGTATTGTTGA ATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAATTTCATGTTCTCATCCTAGGAATCGACAAGGCGGGGAAAACGACTTTGCTTGAGAAGTTGAAGTCATTATACTCGAACTTGGAAGGTCTATCCCCTGATCGGATTGTTCCAACCGTTGGACTCAATATTGGGCGTCTAGAGGTGTTGAATGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGCCTGGCCTTCGGTCTATTTGGGAGAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATCGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCACTGGAGAAAGTTCTTCGACACGAGGATCTGCAAGGAGCTCCACTTTTGGTTTTAGCAAACAAGCAGGTGAGAACCAGTGATGATTCAATCATAAATTGGAAAACAAATGAGATCAAGTTGTATTGTTGA MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNIGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHEDLQGAPLLVLANKQVRTSDDSIINWKTNEIKLYC
BLAST of Carg22092-RA vs. NCBI nr
Match: XP_022944816.1 (ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_022944817.1 ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_022944818.1 ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_023541415.1 ADP-ribosylation factor-related protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 274.2 bits (700), Expect = 2.6e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. NCBI nr
Match: XP_022968222.1 (ADP-ribosylation factor-related protein 1 [Cucurbita maxima] >XP_022968223.1 ADP-ribosylation factor-related protein 1 [Cucurbita maxima] >XP_022968224.1 ADP-ribosylation factor-related protein 1 [Cucurbita maxima]) HSP 1 Score: 274.2 bits (700), Expect = 2.6e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. NCBI nr
Match: XP_004140778.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 273.5 bits (698), Expect = 4.5e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. NCBI nr
Match: XP_004140779.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis sativus] >KGN57362.1 hypothetical protein Csa_3G181980 [Cucumis sativus]) HSP 1 Score: 273.5 bits (698), Expect = 4.5e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. NCBI nr
Match: XP_008439194.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo] >XP_008439195.1 PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo] >XP_016899043.1 PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo]) HSP 1 Score: 273.5 bits (698), Expect = 4.5e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. TAIR10
Match: AT5G52210.1 (GTP-binding protein 1) HSP 1 Score: 238.0 bits (606), Expect = 3.8e-63 Identity = 115/139 (82.73%), Postives = 127/139 (91.37%), Query Frame = 0
BLAST of Carg22092-RA vs. TAIR10
Match: AT5G67560.1 (ADP-ribosylation factor-like A1D) HSP 1 Score: 99.4 bits (246), Expect = 2.1e-21 Identity = 53/135 (39.26%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of Carg22092-RA vs. TAIR10
Match: AT3G49870.1 (ADP-ribosylation factor-like A1C) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-21 Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 0
BLAST of Carg22092-RA vs. TAIR10
Match: AT3G22950.1 (ADP-ribosylation factor C1) HSP 1 Score: 97.8 bits (242), Expect = 6.1e-21 Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 0
BLAST of Carg22092-RA vs. TAIR10
Match: AT2G24765.1 (ADP-ribosylation factor 3) HSP 1 Score: 95.1 bits (235), Expect = 4.0e-20 Identity = 48/132 (36.36%), Postives = 76/132 (57.58%), Query Frame = 0
BLAST of Carg22092-RA vs. Swiss-Prot
Match: sp|Q8BXL7|ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus OX=10090 GN=Arfrp1 PE=1 SV=2) HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36 Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Carg22092-RA vs. Swiss-Prot
Match: sp|Q63055|ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus OX=10116 GN=Arfrp1 PE=2 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 2.2e-36 Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Carg22092-RA vs. Swiss-Prot
Match: sp|Q32LJ2|ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus OX=9913 GN=ARFRP1 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 3.8e-36 Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Carg22092-RA vs. Swiss-Prot
Match: sp|Q13795|ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens OX=9606 GN=ARFRP1 PE=1 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 8.4e-36 Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Carg22092-RA vs. Swiss-Prot
Match: sp|Q5R579|ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii OX=9601 GN=ARFRP1 PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 8.4e-36 Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 0
BLAST of Carg22092-RA vs. TrEMBL
Match: tr|A0A1S3AY63|A0A1S3AY63_CUCME (ADP-ribosylation factor-related protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484067 PE=3 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. TrEMBL
Match: tr|A0A1S3AYV2|A0A1S3AYV2_CUCME (ADP-ribosylation factor-related protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484067 PE=3 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. TrEMBL
Match: tr|A0A0A0L9R1|A0A0A0L9R1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181980 PE=3 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Carg22092-RA vs. TrEMBL
Match: tr|A0A2I4FGT3|A0A2I4FGT3_9ROSI (ADP-ribosylation factor-related protein 1 OS=Juglans regia OX=51240 GN=LOC108998666 PE=3 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 2.4e-67 Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 0
BLAST of Carg22092-RA vs. TrEMBL
Match: tr|A0A067JEK0|A0A067JEK0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26132 PE=3 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 5.2e-67 Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|