Carg21932-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21932-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-binding protein
Location	Cucurbita_argyrosperma_scaffold_180 : 77433 .. 78400 (-)
Sequence length	886

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAATGTCGAACTATTGTTTTCTCTAATATTACGGACTTTGAATTTAAGTTGATGGGTTATGATATATTATTGTAATCATAGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAGATGAACTCGATAGAGAAAAGTCTCCTATAGAGATTGATTTTTATTAGAGAGTCGTTATTGTTAGTTGTTGGTGTGTCTTTGGCTGTGTCTTGTAGTTTTTTCCTTGTCGTCCACTTAATCGTCGTATCATGTATGGTGTCTGTATCATGTGTTTGGTAGCTTTAAGGTTGTAATAATCATCCATTGATGTTTTTTTTTATTAATCCTAATTTAGAATAAAGAAAAACAAGAACTTTATGG

mRNA sequence

ATCCATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAGATGAACTCGATAGAGAAAAGTCTCCTATAGAGATTGATTTTTATTAGAGAGTCGTTATTGTTAGTTGTTGGTGTGTCTTTGGCTGTGTCTTGTAGTTTTTTCCTTGTCGTCCACTTAATCGTCGTATCATGTATGGTGTCTGTATCATGTGTTTGGTAGCTTTAAGGTTGTAATAATCATCCATTGATGTTTTTTTTTATTAATCCTAATTTAGAATAAAGAAAAACAAGAACTTTATGG

Coding sequence (CDS)

ATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAG

Protein sequence

MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG

Homology

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BLAST of Carg21932-RA vs. NCBI nr
Match: XP_022926078.1 (auxin-binding protein ABP19a-like [Cucurbita moschata])

HSP 1 Score: 419.1 bits (1076), Expect = 9.1e-114
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 213

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BLAST of Carg21932-RA vs. NCBI nr
Match: XP_022968205.1 (auxin-binding protein ABP19a-like [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 2.0e-113
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MA+KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 1   MANKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 213

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BLAST of Carg21932-RA vs. NCBI nr
Match: XP_023529910.1 (auxin-binding protein ABP19a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 5.9e-113
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MA+KMVLPLFF FSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 11  MANKMVLPLFFAFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 70

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 71  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 130

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 131 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 190

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 191 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 223

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BLAST of Carg21932-RA vs. NCBI nr
Match: XP_008450917.1 (PREDICTED: auxin-binding protein ABP19a-like [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 8.0e-102
Identity = 197/215 (91.63%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADLKSPDTP+GFPCKK SLVTEKDFVYSG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLKSPDTPSGFPCKKASLVTEKDFVYSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKNTALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLD  TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDAVTIKKLKGVLGGSG 215

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BLAST of Carg21932-RA vs. NCBI nr
Match: XP_022147573.1 (auxin-binding protein ABP20-like [Momordica charantia])

HSP 1 Score: 375.2 bits (962), Expect = 1.5e-100
Identity = 189/214 (88.32%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MASKM-VLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGL 60
           MA KM +LPL F+FSVLAS S ALVQDFCVADLKS DTP+GFPCKK + VTEKDFVYSGL
Sbjct: 1   MAKKMAILPLLFIFSVLASSSRALVQDFCVADLKSSDTPSGFPCKKAAFVTEKDFVYSGL 60

Query: 61  GVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEG 120
           GVAGNTSN+IKAAVTPAFTAQFPGVNGLGISLARLDLA+GGVIPFHTHPA SE+L+V+EG
Sbjct: 61  GVAGNTSNIIKAAVTPAFTAQFPGVNGLGISLARLDLAIGGVIPFHTHPAGSEILVVIEG 120

Query: 121 TICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDF 180
           TICAGF+SSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  AL FVSFSS NPGLQILDF
Sbjct: 121 TICAGFISSANTVYFKTLNKGDIMVFPQGLLHFQINSGKSNALAFVSFSSPNPGLQILDF 180

Query: 181 ALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           ALFGNELPTDIVAKTTFLD A IKKLKGVLGGSG
Sbjct: 181 ALFGNELPTDIVAKTTFLDIAQIKKLKGVLGGSG 214

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BLAST of Carg21932-RA vs. TAIR10
Match: AT5G20630.1 (germin 3)

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-81
Identity = 141/209 (67.46%), Postives = 173/209 (82.78%), Query Frame = 0


Query: 4   KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAG 63
           KM++ +FF+ S++++ S A VQDFCVAD K P +P+G+ CK    VTE DF ++GLG AG
Sbjct: 2   KMIIQIFFIISLISTISFASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAG 61

Query: 64  NTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICA 123
           NTSN+IKAAVTPAF   + G+NGLG+SLARLDLA GGVIP HTHP ASEVL+V++GTICA
Sbjct: 62  NTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICA 121

Query: 124 GFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFG 183
           GF+SSAN VY KTLN+GD MVFPQGLLHFQ+NSGKG AL FV+F S++PGLQIL FALF 
Sbjct: 122 GFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFA 181

Query: 184 NELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           N+LP+++V  TTFL  A +KKLKGVLGG+
Sbjct: 182 NDLPSELVEATTFLSDAEVKKLKGVLGGT 210

[Close]

BLAST of Carg21932-RA vs. TAIR10
Match: AT1G72610.1 (germin-like protein 1)

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-75
Identity = 139/208 (66.83%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 6   VLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNT 65
           +L   F+ S+L + S+A VQDFCVA+LK  +TPAG+PC +   V   DFV+SGLG  GNT
Sbjct: 1   MLRTIFLLSLLFALSNASVQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNT 60

Query: 66  SNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGF 125
           +N+I AAVTPAF AQFPG+NGLG+S ARLDLA  GVIP HTHP ASEVL V+ G+I AGF
Sbjct: 61  TNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGF 120

Query: 126 VSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNE 185
           VSSAN VY +TL  G +MVFPQGLLHFQIN+GK  A   V+F+SANPGLQILDFALF N 
Sbjct: 121 VSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANS 180

Query: 186 LPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LPT++V  TTFLD  T+KKLKGVLGG+G
Sbjct: 181 LPTELVVGTTFLDATTVKKLKGVLGGTG 208

[Close]

BLAST of Carg21932-RA vs. TAIR10
Match: AT1G09560.1 (germin-like protein 5)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 86/196 (43.88%), Postives = 120/196 (61.22%), Query Frame = 0


Query: 13  FSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIKAA 72
           F + +S    ++QD CVADL S     GFPCK  + VT  DF   GL   G T+N   A 
Sbjct: 17  FFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGAL 76

Query: 73  VTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSANTV 132
           VT A     PG+N LG+SL+R+D A GG+ P HTHP A+EV+ V+EGT+  GF+++AN +
Sbjct: 77  VTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKL 136

Query: 133 YFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN--ELPTDI 192
             ++L KGD+  FP+GL+HFQ N+G   A    +F+S  PG Q L   LFG+   +P +I
Sbjct: 137 ISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNI 196

Query: 193 VAKTTFLDPATIKKLK 207
           +A+     P T+K +K
Sbjct: 197 LAQAFQTSPGTVKHIK 212

[Close]

BLAST of Carg21932-RA vs. TAIR10
Match: AT1G18980.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 9.0e-39
Identity = 90/198 (45.45%), Postives = 123/198 (62.12%), Query Frame = 0


Query: 11  FVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIK 70
           FV   L+S S  L QDFCV DLK+  +  GFPCK  S V+  DF +SGLG   NTS    
Sbjct: 21  FVIPSLSSDSDPL-QDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNG 80

Query: 71  AAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSAN 130
            AV+PA    FPG+N LG+S+  ++ A GGV P H+HP A+E  +V+EG++  GF+++ N
Sbjct: 81  VAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNN 140

Query: 131 TVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNE--LPT 190
           T++ K LN G++ V P+GL+HFQ N GK  A    SF+S  PG  +L   LFG+   +P 
Sbjct: 141 TLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPN 200

Query: 191 DIVAKTTFLDPATIKKLK 207
            ++ KT   D  T+ KLK
Sbjct: 201 AVLTKTFRTDDVTVNKLK 215

[Close]

BLAST of Carg21932-RA vs. TAIR10
Match: AT5G38960.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-38
Identity = 93/198 (46.97%), Postives = 121/198 (61.11%), Query Frame = 0


Query: 24  VQDFCVADLKSPDTPA------GFPCKKVSLVTEKDFVYSGLGVAGNT-SNLIKAAVTPA 83
           +QDFC+      +TPA      G  CK   LVT  DF +SGL  A  T S+ + + VT  
Sbjct: 28  LQDFCI----GVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTV 87

Query: 84  FTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSS--ANTVYF 143
              Q PG+N LGISL R+D  + G  P HTHP A+E+LLV EGT+  GF SS   N ++ 
Sbjct: 88  NVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFN 147

Query: 144 KTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTD--IVA 203
           KTLNKGD+ VFP+GL+HFQ+N GK  A+ F S SS NPG+ I+   LFG++ P D  ++A
Sbjct: 148 KTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLA 207

Query: 204 KTTFLDPATIKKLKGVLG 211
           K   LDP  I +L+   G
Sbjct: 208 KAFQLDPKVIIQLQKKFG 221

[Close]

BLAST of Carg21932-RA vs. Swiss-Prot
Match: sp|Q9ZRA4|AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica OX=3760 GN=ABP19A PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.9e-85
Identity = 157/208 (75.48%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+FF F +L S SHA VQDFCVAD K+PD PAG+ CKK + VT  DFVYSGLG+AGN
Sbjct: 1   MIFPIFFTFFLLLSSSHASVQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+IKAAVTPAF AQFPGVNGLGISLARLDL  GGVIPFHTHP ASEVLLVV+GTI AG
Sbjct: 61  TTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y KTL KGDIMVFPQGLLHFQ+N G   AL F SFSS +PGLQILDFALF N
Sbjct: 121 FVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +LPT+++A+TTFLD A IKKLKGVLGG+
Sbjct: 181 DLPTELIAQTTFLDAAQIKKLKGVLGGT 208

[Close]

BLAST of Carg21932-RA vs. Swiss-Prot
Match: sp|O04011|ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica OX=3760 GN=ABP20 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-84
Identity = 152/208 (73.08%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+ F F +L S S+A VQDFCVADL +P+ PAGF CKK + V   DFV+SGLG+AGN
Sbjct: 6   MIFPILFTFFLLLSSSNAAVQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGN 65

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           TSN+IKAAVTPAF AQFPGVNGLGIS+ARLDLAVGGV+PFHTHP ASEVL+V +GTICAG
Sbjct: 66  TSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAG 125

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y +TL KGDIMVFPQGLLHFQ+N G+  AL F SF SA+PGLQILDFALF N
Sbjct: 126 FVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKN 185

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +LPT+++A+TTFLD A IKKLKGVLGG+
Sbjct: 186 DLPTEVIAQTTFLDAAQIKKLKGVLGGT 213

[Close]

BLAST of Carg21932-RA vs. Swiss-Prot
Match: sp|O04012|AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica OX=3760 GN=ABP19B PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 149/208 (71.63%), Postives = 173/208 (83.17%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+FF F +L S SHA VQDFCVAD K+PD PAG+ CKK ++VT  DFVYSGLG+AGN
Sbjct: 1   MIFPIFFTFFLLLSTSHASVQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+ KAAVTPAF AQFPGVNGLGISLARLDL  GGV+PFHTHP ASEVLLVV+GTI AG
Sbjct: 61  TTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y KTL KGDI+VFPQGLLHFQ+N G   A+ F SFSS +PGLQI+DFALF N
Sbjct: 121 FVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +L T+++A+TT LD   IKKLKGVLGG+
Sbjct: 181 DLATELIAQTTLLDAPQIKKLKGVLGGT 208

[Close]

BLAST of Carg21932-RA vs. Swiss-Prot
Match: sp|P94072|GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana OX=3702 GN=GER3 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-79
Identity = 141/209 (67.46%), Postives = 173/209 (82.78%), Query Frame = 0


Query: 4   KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAG 63
           KM++ +FF+ S++++ S A VQDFCVAD K P +P+G+ CK    VTE DF ++GLG AG
Sbjct: 2   KMIIQIFFIISLISTISFASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAG 61

Query: 64  NTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICA 123
           NTSN+IKAAVTPAF   + G+NGLG+SLARLDLA GGVIP HTHP ASEVL+V++GTICA
Sbjct: 62  NTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICA 121

Query: 124 GFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFG 183
           GF+SSAN VY KTLN+GD MVFPQGLLHFQ+NSGKG AL FV+F S++PGLQIL FALF 
Sbjct: 122 GFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFA 181

Query: 184 NELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           N+LP+++V  TTFL  A +KKLKGVLGG+
Sbjct: 182 NDLPSELVEATTFLSDAEVKKLKGVLGGT 210

[Close]

BLAST of Carg21932-RA vs. Swiss-Prot
Match: sp|L8BRS3|GLP1_MORAL (Germin-like protein OS=Morus alba OX=3498 PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.5e-79
Identity = 140/209 (66.99%), Postives = 172/209 (82.30%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M++P+FF+FS+L S SH  +QDFCVAD  +P  PAG+ CK  + VT  +FVYSGLG+ GN
Sbjct: 1   MIVPIFFLFSLLFSSSHGAIQDFCVADYSAPQGPAGYSCKNPAKVTVDNFVYSGLGITGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+NLIKAAVT AF  QFPGVNGLGISLAR DLA GGVIPFHTHP ASE+++V+EG++CA 
Sbjct: 61  TTNLIKAAVTTAFDNQFPGVNGLGISLARPDLAPGGVIPFHTHPGASEIIIVIEGSLCAA 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FVSS N VY K+L KGD M+FP GLLHFQ+N+GK  AL FV+F+S NPGLQ++D+ALFGN
Sbjct: 121 FVSSDNKVYLKSLKKGDTMIFPSGLLHFQLNAGKNNALFFVAFNSPNPGLQLVDYALFGN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           +L T++VA  +FLDPA IK+LK VLGGSG
Sbjct: 181 DLATELVAAASFLDPAEIKRLKAVLGGSG 209

[Close]

BLAST of Carg21932-RA vs. TrEMBL
Match: tr|A0A1S3BRE3|A0A1S3BRE3_CUCME (auxin-binding protein ABP19a-like OS=Cucumis melo OX=3656 GN=LOC103492364 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 5.3e-102
Identity = 197/215 (91.63%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADLKSPDTP+GFPCKK SLVTEKDFVYSG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLKSPDTPSGFPCKKASLVTEKDFVYSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKNTALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLD  TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDAVTIKKLKGVLGGSG 215

[Close]

BLAST of Carg21932-RA vs. TrEMBL
Match: tr|A0A0A0LZJ4|A0A0A0LZJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G596420 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 4.9e-100
Identity = 192/215 (89.30%), Postives = 198/215 (92.09%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADL S DTP+GFPCKK SLVTEKDFV+SG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLMSADTPSGFPCKKASLVTEKDFVFSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLG+SLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGVSLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           G ICAGFVSSANTVYFKTLNKGDIM+FPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GVICAGFVSSANTVYFKTLNKGDIMIFPQGLLHFQINSGKTAALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLDP TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDPVTIKKLKGVLGGSG 215

[Close]

BLAST of Carg21932-RA vs. TrEMBL
Match: tr|A0A175YK75|A0A175YK75_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028327 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.2e-87
Identity = 161/209 (77.03%), Postives = 183/209 (87.56%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M LP+    ++L S ++A V DFCVAD++ PDTP+GFPCKKV+ +TEKDF YSGLGVAGN
Sbjct: 1   MYLPVLLTITLLFSSAYASVNDFCVADMQQPDTPSGFPCKKVTSLTEKDFAYSGLGVAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+I AAVTPAF AQFP VNGLGIS+ARLDLA GGVIP HTHP ASEVL+V++GTICAG
Sbjct: 61  TTNIISAAVTPAFVAQFPAVNGLGISMARLDLAKGGVIPMHTHPGASEVLVVIKGTICAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           F+SSANTVYFKTL KGDIMVFPQGLLHFQINS  G +L FVSFSSANPGLQILD+ALFGN
Sbjct: 121 FISSANTVYFKTLFKGDIMVFPQGLLHFQINSDDGPSLAFVSFSSANPGLQILDYALFGN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           ELPT++V KTTFLDPA +KKLK VLGGSG
Sbjct: 181 ELPTELVTKTTFLDPAVVKKLKSVLGGSG 209

[Close]

BLAST of Carg21932-RA vs. TrEMBL
Match: tr|A0A2I4GK76|A0A2I4GK76_9ROSI (auxin-binding protein ABP20-like OS=Juglans regia OX=51240 GN=LOC109008586 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.8e-86
Identity = 160/209 (76.56%), Postives = 179/209 (85.65%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+ F+FS+L S SHA VQDFCVADL  P++PAG+ CKK + VT  DFV+SGLG+AGN
Sbjct: 1   MITPIIFIFSLLLSSSHAAVQDFCVADLSLPESPAGYACKKPAAVTVTDFVFSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           TSN+IKAAVTPAF  QFPGVNGLGISLARLDLAVGGV+PFHTHP  SEVLLVV+GT+CAG
Sbjct: 61  TSNIIKAAVTPAFATQFPGVNGLGISLARLDLAVGGVVPFHTHPGGSEVLLVVQGTLCAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FVSSANTVY KTL KGDIMVFPQGLLHFQINSG   AL FVSFSSA PGLQILD+ LF N
Sbjct: 121 FVSSANTVYIKTLKKGDIMVFPQGLLHFQINSGGSQALAFVSFSSATPGLQILDYVLFAN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
            LPT+++A TTFLD A IKKLKG LGG+G
Sbjct: 181 NLPTEVIAATTFLDAAQIKKLKGALGGTG 209

[Close]

BLAST of Carg21932-RA vs. TrEMBL
Match: tr|A0A251TQG6|A0A251TQG6_HELAN (Putative auxin-binding protein ABP19a OS=Helianthus annuus OX=4232 GN=AB19A PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 6.9e-86
Identity = 162/202 (80.20%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 11  FVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIK 70
           F+F ++AS S+A VQDFCVADL   DTP+GFPCK V  V+  DFVYSGL  AGNTSNLIK
Sbjct: 9   FLFLLVASSSYASVQDFCVADLSQSDTPSGFPCKDVKKVSVSDFVYSGLAAAGNTSNLIK 68

Query: 71  AAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSAN 130
           AAVTPAFTAQFPGVNGLGIS ARLDLAVGGVIP HTHP  SE+L+V+EGTICAGF+SSAN
Sbjct: 69  AAVTPAFTAQFPGVNGLGISTARLDLAVGGVIPMHTHPGGSELLVVIEGTICAGFISSAN 128

Query: 131 TVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTDI 190
           TVYFKTL KGDIM+FPQGLLHFQINSGKG AL  VSFSS  PGLQI DFALF N+LPT+I
Sbjct: 129 TVYFKTLKKGDIMLFPQGLLHFQINSGKGAALAIVSFSSPVPGLQITDFALFANDLPTEI 188

Query: 191 VAKTTFLDPATIKKLKGVLGGS 213
           VA TTFLDPATIKKLKGVLGG+
Sbjct: 189 VAATTFLDPATIKKLKGVLGGT 210

The following BLAST results are available for this feature:

BLAST of Carg21932-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926078.1	9.1e-114	100.00	auxin-binding protein ABP19a-like [Cucurbita moschata]	[more]
XP_022968205.1	2.0e-113	99.53	auxin-binding protein ABP19a-like [Cucurbita maxima]	[more]
XP_023529910.1	5.9e-113	99.06	auxin-binding protein ABP19a-like [Cucurbita pepo subsp. pepo]	[more]
XP_008450917.1	8.0e-102	91.63	PREDICTED: auxin-binding protein ABP19a-like [Cucumis melo]	[more]
XP_022147573.1	1.5e-100	88.32	auxin-binding protein ABP20-like [Momordica charantia]	[more]

BLAST of Carg21932-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20630.1	5.5e-81	67.46	germin 3	[more]
AT1G72610.1	4.5e-75	66.83	germin-like protein 1	[more]
AT1G09560.1	1.8e-39	43.88	germin-like protein 5	[more]
AT1G18980.1	9.0e-39	45.45	RmlC-like cupins superfamily protein	[more]
AT5G38960.1	2.6e-38	46.97	RmlC-like cupins superfamily protein	[more]

BLAST of Carg21932-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZRA4\|AB19A_PRUPE	7.9e-85	75.48	Auxin-binding protein ABP19a OS=Prunus persica OX=3760 GN=ABP19A PE=3 SV=1	[more]
sp\|O04011\|ABP20_PRUPE	2.3e-84	73.08	Auxin-binding protein ABP20 OS=Prunus persica OX=3760 GN=ABP20 PE=2 SV=1	[more]
sp\|O04012\|AB19B_PRUPE	1.1e-81	71.63	Auxin-binding protein ABP19b OS=Prunus persica OX=3760 GN=ABP19B PE=3 SV=1	[more]
sp\|P94072\|GL33_ARATH	1.0e-79	67.46	Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana OX=3702 GN=GER3...	[more]
sp\|L8BRS3\|GLP1_MORAL	8.5e-79	66.99	Germin-like protein OS=Morus alba OX=3498 PE=1 SV=1	[more]

BLAST of Carg21932-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRE3\|A0A1S3BRE3_CUCME	5.3e-102	91.63	auxin-binding protein ABP19a-like OS=Cucumis melo OX=3656 GN=LOC103492364 PE=3 S...	[more]
tr\|A0A0A0LZJ4\|A0A0A0LZJ4_CUCSA	4.9e-100	89.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G596420 PE=3 SV=1	[more]
tr\|A0A175YK75\|A0A175YK75_DAUCA	2.2e-87	77.03	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028327 ...	[more]
tr\|A0A2I4GK76\|A0A2I4GK76_9ROSI	1.8e-86	76.56	auxin-binding protein ABP20-like OS=Juglans regia OX=51240 GN=LOC109008586 PE=3 ...	[more]
tr\|A0A251TQG6\|A0A251TQG6_HELAN	6.9e-86	80.20	Putative auxin-binding protein ABP19a OS=Helianthus annuus OX=4232 GN=AB19A PE=3...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity
GO:0030145	manganese ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR019780	Germin_Mn-BS
IPR014710	RmlC-like_jellyroll
IPR006045	Cupin_1
IPR001929	Germin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21932	Carg21932	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21932-RA	Carg21932-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21932-RA.three_prime_UTR.1	Carg21932-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21932-RA.CDS.2	Carg21932-RA.CDS.2	CDS
Carg21932-RA.CDS.1	Carg21932-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21932-RA.five_prime_UTR.1	Carg21932-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21932-RA.exon.2	Carg21932-RA.exon.2	exon
Carg21932-RA.exon.1	Carg21932-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 168..183 score: 50.58 coord: 105..125 score: 58.14 coord: 135..155 score: 60.91
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 57..203 e-value: 5.4E-41 score: 152.2
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 59..202 e-value: 5.5E-34 score: 116.9
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 21..212 e-value: 3.4E-67 score: 227.8
None	No IPR available	PANTHER	PTHR31238:SF2	SUBFAMILY NOT NAMED	coord: 5..212
None	No IPR available	PANTHER	PTHR31238	FAMILY NOT NAMED	coord: 5..212
IPR019780	Germin, manganese binding site	PROSITE	PS00725	GERMIN	coord: 100..113
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 24..207