Carg21932 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21932
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-binding protein
Location	Cucurbita_argyrosperma_scaffold_180 : 77433 .. 78400 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAATGTCGAACTATTGTTTTCTCTAATATTACGGACTTTGAATTTAAGTTGATGGGTTATGATATATTATTGTAATCATAGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAGATGAACTCGATAGAGAAAAGTCTCCTATAGAGATTGATTTTTATTAGAGAGTCGTTATTGTTAGTTGTTGGTGTGTCTTTGGCTGTGTCTTGTAGTTTTTTCCTTGTCGTCCACTTAATCGTCGTATCATGTATGGTGTCTGTATCATGTGTTTGGTAGCTTTAAGGTTGTAATAATCATCCATTGATGTTTTTTTTTATTAATCCTAATTTAGAATAAAGAAAAACAAGAACTTTATGG

mRNA sequence

ATCCATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAGATGAACTCGATAGAGAAAAGTCTCCTATAGAGATTGATTTTTATTAGAGAGTCGTTATTGTTAGTTGTTGGTGTGTCTTTGGCTGTGTCTTGTAGTTTTTTCCTTGTCGTCCACTTAATCGTCGTATCATGTATGGTGTCTGTATCATGTGTTTGGTAGCTTTAAGGTTGTAATAATCATCCATTGATGTTTTTTTTTATTAATCCTAATTTAGAATAAAGAAAAACAAGAACTTTATGG

Coding sequence (CDS)

ATGGCTAGCAAGATGGTGCTTCCTCTTTTCTTCGTCTTCTCCGTCCTCGCCTCCTTTTCCCACGCTCTCGTCCAAGACTTCTGTGTCGCCGACCTCAAATCCCCCGACACGCCCGCTGGCTTCCCTTGCAAGAAGGTGTCACTTGTTACGGAAAAGGACTTTGTTTACTCCGGCCTCGGTGTTGCTGGTAACACGTCAAATCTCATCAAGGCGGCTGTGACTCCAGCCTTCACTGCTCAATTTCCCGGCGTGAATGGCCTCGGAATCTCATTGGCTCGCCTTGACCTTGCGGTTGGCGGTGTGATACCGTTCCACACCCACCCTGCTGCCTCCGAAGTTCTGCTCGTCGTCGAAGGCACAATCTGCGCCGGGTTTGTTTCGTCGGCGAATACCGTCTACTTCAAGACATTGAACAAAGGTGACATTATGGTATTCCCTCAAGGGCTACTACATTTCCAAATAAACTCCGGCAAGGGCGGTGCTCTTGGATTTGTTAGCTTTAGTAGTGCCAACCCAGGGCTGCAAATTCTCGACTTCGCCTTGTTCGGTAACGAATTGCCGACCGATATCGTTGCGAAGACGACGTTCTTGGACCCTGCTACGATCAAAAAGCTTAAGGGCGTTCTGGGCGGAAGTGGTTAG

Protein sequence

MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG

Homology

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BLAST of Carg21932 vs. NCBI nr
Match: XP_022926078.1 (auxin-binding protein ABP19a-like [Cucurbita moschata])

HSP 1 Score: 419.1 bits (1076), Expect = 9.1e-114
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 213

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BLAST of Carg21932 vs. NCBI nr
Match: XP_022968205.1 (auxin-binding protein ABP19a-like [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 2.0e-113
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MA+KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 1   MANKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 213

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BLAST of Carg21932 vs. NCBI nr
Match: XP_023529910.1 (auxin-binding protein ABP19a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 5.9e-113
Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MASKMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 60
           MA+KMVLPLFF FSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG
Sbjct: 11  MANKMVLPLFFAFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLG 70

Query: 61  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 120
           VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT
Sbjct: 71  VAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGT 130

Query: 121 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 180
           ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA
Sbjct: 131 ICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFA 190

Query: 181 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG
Sbjct: 191 LFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 223

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BLAST of Carg21932 vs. NCBI nr
Match: XP_008450917.1 (PREDICTED: auxin-binding protein ABP19a-like [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 8.0e-102
Identity = 197/215 (91.63%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADLKSPDTP+GFPCKK SLVTEKDFVYSG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLKSPDTPSGFPCKKASLVTEKDFVYSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKNTALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLD  TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDAVTIKKLKGVLGGSG 215

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BLAST of Carg21932 vs. NCBI nr
Match: XP_022147573.1 (auxin-binding protein ABP20-like [Momordica charantia])

HSP 1 Score: 375.2 bits (962), Expect = 1.5e-100
Identity = 189/214 (88.32%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MASKM-VLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGL 60
           MA KM +LPL F+FSVLAS S ALVQDFCVADLKS DTP+GFPCKK + VTEKDFVYSGL
Sbjct: 1   MAKKMAILPLLFIFSVLASSSRALVQDFCVADLKSSDTPSGFPCKKAAFVTEKDFVYSGL 60

Query: 61  GVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEG 120
           GVAGNTSN+IKAAVTPAFTAQFPGVNGLGISLARLDLA+GGVIPFHTHPA SE+L+V+EG
Sbjct: 61  GVAGNTSNIIKAAVTPAFTAQFPGVNGLGISLARLDLAIGGVIPFHTHPAGSEILVVIEG 120

Query: 121 TICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDF 180
           TICAGF+SSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  AL FVSFSS NPGLQILDF
Sbjct: 121 TICAGFISSANTVYFKTLNKGDIMVFPQGLLHFQINSGKSNALAFVSFSSPNPGLQILDF 180

Query: 181 ALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           ALFGNELPTDIVAKTTFLD A IKKLKGVLGGSG
Sbjct: 181 ALFGNELPTDIVAKTTFLDIAQIKKLKGVLGGSG 214

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BLAST of Carg21932 vs. TAIR10
Match: AT5G20630.1 (germin 3)

HSP 1 Score: 297.7 bits (761), Expect = 5.5e-81
Identity = 141/209 (67.46%), Postives = 173/209 (82.78%), Query Frame = 0


Query: 4   KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAG 63
           KM++ +FF+ S++++ S A VQDFCVAD K P +P+G+ CK    VTE DF ++GLG AG
Sbjct: 2   KMIIQIFFIISLISTISFASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAG 61

Query: 64  NTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICA 123
           NTSN+IKAAVTPAF   + G+NGLG+SLARLDLA GGVIP HTHP ASEVL+V++GTICA
Sbjct: 62  NTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICA 121

Query: 124 GFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFG 183
           GF+SSAN VY KTLN+GD MVFPQGLLHFQ+NSGKG AL FV+F S++PGLQIL FALF 
Sbjct: 122 GFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFA 181

Query: 184 NELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           N+LP+++V  TTFL  A +KKLKGVLGG+
Sbjct: 182 NDLPSELVEATTFLSDAEVKKLKGVLGGT 210

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BLAST of Carg21932 vs. TAIR10
Match: AT1G72610.1 (germin-like protein 1)

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-75
Identity = 139/208 (66.83%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 6   VLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNT 65
           +L   F+ S+L + S+A VQDFCVA+LK  +TPAG+PC +   V   DFV+SGLG  GNT
Sbjct: 1   MLRTIFLLSLLFALSNASVQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNT 60

Query: 66  SNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGF 125
           +N+I AAVTPAF AQFPG+NGLG+S ARLDLA  GVIP HTHP ASEVL V+ G+I AGF
Sbjct: 61  TNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGF 120

Query: 126 VSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNE 185
           VSSAN VY +TL  G +MVFPQGLLHFQIN+GK  A   V+F+SANPGLQILDFALF N 
Sbjct: 121 VSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANS 180

Query: 186 LPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           LPT++V  TTFLD  T+KKLKGVLGG+G
Sbjct: 181 LPTELVVGTTFLDATTVKKLKGVLGGTG 208

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BLAST of Carg21932 vs. TAIR10
Match: AT1G09560.1 (germin-like protein 5)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 86/196 (43.88%), Postives = 120/196 (61.22%), Query Frame = 0


Query: 13  FSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIKAA 72
           F + +S    ++QD CVADL S     GFPCK  + VT  DF   GL   G T+N   A 
Sbjct: 17  FFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGAL 76

Query: 73  VTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSANTV 132
           VT A     PG+N LG+SL+R+D A GG+ P HTHP A+EV+ V+EGT+  GF+++AN +
Sbjct: 77  VTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKL 136

Query: 133 YFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN--ELPTDI 192
             ++L KGD+  FP+GL+HFQ N+G   A    +F+S  PG Q L   LFG+   +P +I
Sbjct: 137 ISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNI 196

Query: 193 VAKTTFLDPATIKKLK 207
           +A+     P T+K +K
Sbjct: 197 LAQAFQTSPGTVKHIK 212

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BLAST of Carg21932 vs. TAIR10
Match: AT1G18980.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 157.5 bits (397), Expect = 9.0e-39
Identity = 90/198 (45.45%), Postives = 123/198 (62.12%), Query Frame = 0


Query: 11  FVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIK 70
           FV   L+S S  L QDFCV DLK+  +  GFPCK  S V+  DF +SGLG   NTS    
Sbjct: 21  FVIPSLSSDSDPL-QDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNG 80

Query: 71  AAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSAN 130
            AV+PA    FPG+N LG+S+  ++ A GGV P H+HP A+E  +V+EG++  GF+++ N
Sbjct: 81  VAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNN 140

Query: 131 TVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNE--LPT 190
           T++ K LN G++ V P+GL+HFQ N GK  A    SF+S  PG  +L   LFG+   +P 
Sbjct: 141 TLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPN 200

Query: 191 DIVAKTTFLDPATIKKLK 207
            ++ KT   D  T+ KLK
Sbjct: 201 AVLTKTFRTDDVTVNKLK 215

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BLAST of Carg21932 vs. TAIR10
Match: AT5G38960.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-38
Identity = 93/198 (46.97%), Postives = 121/198 (61.11%), Query Frame = 0


Query: 24  VQDFCVADLKSPDTPA------GFPCKKVSLVTEKDFVYSGLGVAGNT-SNLIKAAVTPA 83
           +QDFC+      +TPA      G  CK   LVT  DF +SGL  A  T S+ + + VT  
Sbjct: 28  LQDFCI----GVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTV 87

Query: 84  FTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSS--ANTVYF 143
              Q PG+N LGISL R+D  + G  P HTHP A+E+LLV EGT+  GF SS   N ++ 
Sbjct: 88  NVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFN 147

Query: 144 KTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTD--IVA 203
           KTLNKGD+ VFP+GL+HFQ+N GK  A+ F S SS NPG+ I+   LFG++ P D  ++A
Sbjct: 148 KTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLA 207

Query: 204 KTTFLDPATIKKLKGVLG 211
           K   LDP  I +L+   G
Sbjct: 208 KAFQLDPKVIIQLQKKFG 221

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BLAST of Carg21932 vs. Swiss-Prot
Match: sp|Q9ZRA4|AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica OX=3760 GN=ABP19A PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 7.9e-85
Identity = 157/208 (75.48%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+FF F +L S SHA VQDFCVAD K+PD PAG+ CKK + VT  DFVYSGLG+AGN
Sbjct: 1   MIFPIFFTFFLLLSSSHASVQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+IKAAVTPAF AQFPGVNGLGISLARLDL  GGVIPFHTHP ASEVLLVV+GTI AG
Sbjct: 61  TTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y KTL KGDIMVFPQGLLHFQ+N G   AL F SFSS +PGLQILDFALF N
Sbjct: 121 FVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +LPT+++A+TTFLD A IKKLKGVLGG+
Sbjct: 181 DLPTELIAQTTFLDAAQIKKLKGVLGGT 208

[Close]

BLAST of Carg21932 vs. Swiss-Prot
Match: sp|O04011|ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica OX=3760 GN=ABP20 PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-84
Identity = 152/208 (73.08%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+ F F +L S S+A VQDFCVADL +P+ PAGF CKK + V   DFV+SGLG+AGN
Sbjct: 6   MIFPILFTFFLLLSSSNAAVQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGN 65

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           TSN+IKAAVTPAF AQFPGVNGLGIS+ARLDLAVGGV+PFHTHP ASEVL+V +GTICAG
Sbjct: 66  TSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAG 125

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y +TL KGDIMVFPQGLLHFQ+N G+  AL F SF SA+PGLQILDFALF N
Sbjct: 126 FVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKN 185

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +LPT+++A+TTFLD A IKKLKGVLGG+
Sbjct: 186 DLPTEVIAQTTFLDAAQIKKLKGVLGGT 213

[Close]

BLAST of Carg21932 vs. Swiss-Prot
Match: sp|O04012|AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica OX=3760 GN=ABP19B PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 149/208 (71.63%), Postives = 173/208 (83.17%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+FF F +L S SHA VQDFCVAD K+PD PAG+ CKK ++VT  DFVYSGLG+AGN
Sbjct: 1   MIFPIFFTFFLLLSTSHASVQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+ KAAVTPAF AQFPGVNGLGISLARLDL  GGV+PFHTHP ASEVLLVV+GTI AG
Sbjct: 61  TTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FV+S NT Y KTL KGDI+VFPQGLLHFQ+N G   A+ F SFSS +PGLQI+DFALF N
Sbjct: 121 FVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           +L T+++A+TT LD   IKKLKGVLGG+
Sbjct: 181 DLATELIAQTTLLDAPQIKKLKGVLGGT 208

[Close]

BLAST of Carg21932 vs. Swiss-Prot
Match: sp|P94072|GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana OX=3702 GN=GER3 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-79
Identity = 141/209 (67.46%), Postives = 173/209 (82.78%), Query Frame = 0


Query: 4   KMVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAG 63
           KM++ +FF+ S++++ S A VQDFCVAD K P +P+G+ CK    VTE DF ++GLG AG
Sbjct: 2   KMIIQIFFIISLISTISFASVQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAG 61

Query: 64  NTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICA 123
           NTSN+IKAAVTPAF   + G+NGLG+SLARLDLA GGVIP HTHP ASEVL+V++GTICA
Sbjct: 62  NTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICA 121

Query: 124 GFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFG 183
           GF+SSAN VY KTLN+GD MVFPQGLLHFQ+NSGKG AL FV+F S++PGLQIL FALF 
Sbjct: 122 GFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFA 181

Query: 184 NELPTDIVAKTTFLDPATIKKLKGVLGGS 213
           N+LP+++V  TTFL  A +KKLKGVLGG+
Sbjct: 182 NDLPSELVEATTFLSDAEVKKLKGVLGGT 210

[Close]

BLAST of Carg21932 vs. Swiss-Prot
Match: sp|L8BRS3|GLP1_MORAL (Germin-like protein OS=Morus alba OX=3498 PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.5e-79
Identity = 140/209 (66.99%), Postives = 172/209 (82.30%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M++P+FF+FS+L S SH  +QDFCVAD  +P  PAG+ CK  + VT  +FVYSGLG+ GN
Sbjct: 1   MIVPIFFLFSLLFSSSHGAIQDFCVADYSAPQGPAGYSCKNPAKVTVDNFVYSGLGITGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+NLIKAAVT AF  QFPGVNGLGISLAR DLA GGVIPFHTHP ASE+++V+EG++CA 
Sbjct: 61  TTNLIKAAVTTAFDNQFPGVNGLGISLARPDLAPGGVIPFHTHPGASEIIIVIEGSLCAA 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FVSS N VY K+L KGD M+FP GLLHFQ+N+GK  AL FV+F+S NPGLQ++D+ALFGN
Sbjct: 121 FVSSDNKVYLKSLKKGDTMIFPSGLLHFQLNAGKNNALFFVAFNSPNPGLQLVDYALFGN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           +L T++VA  +FLDPA IK+LK VLGGSG
Sbjct: 181 DLATELVAAASFLDPAEIKRLKAVLGGSG 209

[Close]

BLAST of Carg21932 vs. TrEMBL
Match: tr|A0A1S3BRE3|A0A1S3BRE3_CUCME (auxin-binding protein ABP19a-like OS=Cucumis melo OX=3656 GN=LOC103492364 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 5.3e-102
Identity = 197/215 (91.63%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADLKSPDTP+GFPCKK SLVTEKDFVYSG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLKSPDTPSGFPCKKASLVTEKDFVYSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKNTALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLD  TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDAVTIKKLKGVLGGSG 215

[Close]

BLAST of Carg21932 vs. TrEMBL
Match: tr|A0A0A0LZJ4|A0A0A0LZJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G596420 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 4.9e-100
Identity = 192/215 (89.30%), Postives = 198/215 (92.09%), Query Frame = 0


Query: 1   MASK-MVLPLFFVFSVL-ASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSG 60
           MA K MVLPLFF FS L AS S ALVQDFCVADL S DTP+GFPCKK SLVTEKDFV+SG
Sbjct: 1   MAKKMMVLPLFFAFSFLAASLSDALVQDFCVADLMSADTPSGFPCKKASLVTEKDFVFSG 60

Query: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVE 120
           LGVAGNTSNLIKAAVTPAFTAQFPGVNGLG+SLARLD+AVGGVIP HTHPA SE+LLVVE
Sbjct: 61  LGVAGNTSNLIKAAVTPAFTAQFPGVNGLGVSLARLDIAVGGVIPMHTHPAGSEILLVVE 120

Query: 121 GTICAGFVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILD 180
           G ICAGFVSSANTVYFKTLNKGDIM+FPQGLLHFQINSGK  ALGFVSFSS NPGLQILD
Sbjct: 121 GVICAGFVSSANTVYFKTLNKGDIMIFPQGLLHFQINSGKTAALGFVSFSSPNPGLQILD 180

Query: 181 FALFGNELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           FALFGNELPTDIVAKTTFLDP TIKKLKGVLGGSG
Sbjct: 181 FALFGNELPTDIVAKTTFLDPVTIKKLKGVLGGSG 215

[Close]

BLAST of Carg21932 vs. TrEMBL
Match: tr|A0A175YK75|A0A175YK75_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028327 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.2e-87
Identity = 161/209 (77.03%), Postives = 183/209 (87.56%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M LP+    ++L S ++A V DFCVAD++ PDTP+GFPCKKV+ +TEKDF YSGLGVAGN
Sbjct: 1   MYLPVLLTITLLFSSAYASVNDFCVADMQQPDTPSGFPCKKVTSLTEKDFAYSGLGVAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           T+N+I AAVTPAF AQFP VNGLGIS+ARLDLA GGVIP HTHP ASEVL+V++GTICAG
Sbjct: 61  TTNIISAAVTPAFVAQFPAVNGLGISMARLDLAKGGVIPMHTHPGASEVLVVIKGTICAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           F+SSANTVYFKTL KGDIMVFPQGLLHFQINS  G +L FVSFSSANPGLQILD+ALFGN
Sbjct: 121 FISSANTVYFKTLFKGDIMVFPQGLLHFQINSDDGPSLAFVSFSSANPGLQILDYALFGN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
           ELPT++V KTTFLDPA +KKLK VLGGSG
Sbjct: 181 ELPTELVTKTTFLDPAVVKKLKSVLGGSG 209

[Close]

BLAST of Carg21932 vs. TrEMBL
Match: tr|A0A2I4GK76|A0A2I4GK76_9ROSI (auxin-binding protein ABP20-like OS=Juglans regia OX=51240 GN=LOC109008586 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.8e-86
Identity = 160/209 (76.56%), Postives = 179/209 (85.65%), Query Frame = 0


Query: 5   MVLPLFFVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGN 64
           M+ P+ F+FS+L S SHA VQDFCVADL  P++PAG+ CKK + VT  DFV+SGLG+AGN
Sbjct: 1   MITPIIFIFSLLLSSSHAAVQDFCVADLSLPESPAGYACKKPAAVTVTDFVFSGLGIAGN 60

Query: 65  TSNLIKAAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAG 124
           TSN+IKAAVTPAF  QFPGVNGLGISLARLDLAVGGV+PFHTHP  SEVLLVV+GT+CAG
Sbjct: 61  TSNIIKAAVTPAFATQFPGVNGLGISLARLDLAVGGVVPFHTHPGGSEVLLVVQGTLCAG 120

Query: 125 FVSSANTVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGN 184
           FVSSANTVY KTL KGDIMVFPQGLLHFQINSG   AL FVSFSSA PGLQILD+ LF N
Sbjct: 121 FVSSANTVYIKTLKKGDIMVFPQGLLHFQINSGGSQALAFVSFSSATPGLQILDYVLFAN 180

Query: 185 ELPTDIVAKTTFLDPATIKKLKGVLGGSG 214
            LPT+++A TTFLD A IKKLKG LGG+G
Sbjct: 181 NLPTEVIAATTFLDAAQIKKLKGALGGTG 209

[Close]

BLAST of Carg21932 vs. TrEMBL
Match: tr|A0A251TQG6|A0A251TQG6_HELAN (Putative auxin-binding protein ABP19a OS=Helianthus annuus OX=4232 GN=AB19A PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 6.9e-86
Identity = 162/202 (80.20%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 11  FVFSVLASFSHALVQDFCVADLKSPDTPAGFPCKKVSLVTEKDFVYSGLGVAGNTSNLIK 70
           F+F ++AS S+A VQDFCVADL   DTP+GFPCK V  V+  DFVYSGL  AGNTSNLIK
Sbjct: 9   FLFLLVASSSYASVQDFCVADLSQSDTPSGFPCKDVKKVSVSDFVYSGLAAAGNTSNLIK 68

Query: 71  AAVTPAFTAQFPGVNGLGISLARLDLAVGGVIPFHTHPAASEVLLVVEGTICAGFVSSAN 130
           AAVTPAFTAQFPGVNGLGIS ARLDLAVGGVIP HTHP  SE+L+V+EGTICAGF+SSAN
Sbjct: 69  AAVTPAFTAQFPGVNGLGISTARLDLAVGGVIPMHTHPGGSELLVVIEGTICAGFISSAN 128

Query: 131 TVYFKTLNKGDIMVFPQGLLHFQINSGKGGALGFVSFSSANPGLQILDFALFGNELPTDI 190
           TVYFKTL KGDIM+FPQGLLHFQINSGKG AL  VSFSS  PGLQI DFALF N+LPT+I
Sbjct: 129 TVYFKTLKKGDIMLFPQGLLHFQINSGKGAALAIVSFSSPVPGLQITDFALFANDLPTEI 188

Query: 191 VAKTTFLDPATIKKLKGVLGGS 213
           VA TTFLDPATIKKLKGVLGG+
Sbjct: 189 VAATTFLDPATIKKLKGVLGGT 210

The following BLAST results are available for this feature:

BLAST of Carg21932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926078.1	9.1e-114	100.00	auxin-binding protein ABP19a-like [Cucurbita moschata]	[more]
XP_022968205.1	2.0e-113	99.53	auxin-binding protein ABP19a-like [Cucurbita maxima]	[more]
XP_023529910.1	5.9e-113	99.06	auxin-binding protein ABP19a-like [Cucurbita pepo subsp. pepo]	[more]
XP_008450917.1	8.0e-102	91.63	PREDICTED: auxin-binding protein ABP19a-like [Cucumis melo]	[more]
XP_022147573.1	1.5e-100	88.32	auxin-binding protein ABP20-like [Momordica charantia]	[more]

BLAST of Carg21932 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20630.1	5.5e-81	67.46	germin 3	[more]
AT1G72610.1	4.5e-75	66.83	germin-like protein 1	[more]
AT1G09560.1	1.8e-39	43.88	germin-like protein 5	[more]
AT1G18980.1	9.0e-39	45.45	RmlC-like cupins superfamily protein	[more]
AT5G38960.1	2.6e-38	46.97	RmlC-like cupins superfamily protein	[more]

BLAST of Carg21932 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZRA4\|AB19A_PRUPE	7.9e-85	75.48	Auxin-binding protein ABP19a OS=Prunus persica OX=3760 GN=ABP19A PE=3 SV=1	[more]
sp\|O04011\|ABP20_PRUPE	2.3e-84	73.08	Auxin-binding protein ABP20 OS=Prunus persica OX=3760 GN=ABP20 PE=2 SV=1	[more]
sp\|O04012\|AB19B_PRUPE	1.1e-81	71.63	Auxin-binding protein ABP19b OS=Prunus persica OX=3760 GN=ABP19B PE=3 SV=1	[more]
sp\|P94072\|GL33_ARATH	1.0e-79	67.46	Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana OX=3702 GN=GER3...	[more]
sp\|L8BRS3\|GLP1_MORAL	8.5e-79	66.99	Germin-like protein OS=Morus alba OX=3498 PE=1 SV=1	[more]

BLAST of Carg21932 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRE3\|A0A1S3BRE3_CUCME	5.3e-102	91.63	auxin-binding protein ABP19a-like OS=Cucumis melo OX=3656 GN=LOC103492364 PE=3 S...	[more]
tr\|A0A0A0LZJ4\|A0A0A0LZJ4_CUCSA	4.9e-100	89.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G596420 PE=3 SV=1	[more]
tr\|A0A175YK75\|A0A175YK75_DAUCA	2.2e-87	77.03	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028327 ...	[more]
tr\|A0A2I4GK76\|A0A2I4GK76_9ROSI	1.8e-86	76.56	auxin-binding protein ABP20-like OS=Juglans regia OX=51240 GN=LOC109008586 PE=3 ...	[more]
tr\|A0A251TQG6\|A0A251TQG6_HELAN	6.9e-86	80.20	Putative auxin-binding protein ABP19a OS=Helianthus annuus OX=4232 GN=AB19A PE=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity
GO:0030145	manganese ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR019780	Germin_Mn-BS
IPR014710	RmlC-like_jellyroll
IPR006045	Cupin_1
IPR001929	Germin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21932-RA	Carg21932-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 168..183 score: 50.58 coord: 105..125 score: 58.14 coord: 135..155 score: 60.91
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 57..203 e-value: 5.4E-41 score: 152.2
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 59..202 e-value: 5.5E-34 score: 116.9
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 21..212 e-value: 3.4E-67 score: 227.8
None	No IPR available	PANTHER	PTHR31238:SF2	SUBFAMILY NOT NAMED	coord: 5..212
None	No IPR available	PANTHER	PTHR31238	FAMILY NOT NAMED	coord: 5..212
IPR019780	Germin, manganese binding site	PROSITE	PS00725	GERMIN	coord: 100..113
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 24..207

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21932	Cla015550	Watermelon (97103) v1	carwmB0888
Carg21932	Cla011165	Watermelon (97103) v1	carwmB0889
Carg21932	Csa1G596420	Cucumber (Chinese Long) v2	carcuB0901
Carg21932	Csa7G450510	Cucumber (Chinese Long) v2	carcuB0904
Carg21932	MELO3C015515	Melon (DHL92) v3.5.1	carmeB0874
Carg21932	MELO3C024356	Melon (DHL92) v3.5.1	carmeB0873
Carg21932	ClCG03G015130	Watermelon (Charleston Gray)	carwcgB0863
Carg21932	CSPI01G28640	Wild cucumber (PI 183967)	carcpiB0921
Carg21932	CSPI07G22550	Wild cucumber (PI 183967)	carcpiB0924
Carg21932	Cucsa.141690	Cucumber (Gy14) v1	carcgyB1006
Carg21932	Cucsa.360270	Cucumber (Gy14) v1	carcgyB1008
Carg21932	CmaCh11G007270	Cucurbita maxima (Rimu)	carcmaB1227
Carg21932	CmoCh11G007400	Cucurbita moschata (Rifu)	carcmoB1198
Carg21932	CmoCh08G007660	Cucurbita moschata (Rifu)	carcmoB1199
Carg21932	Lsi02G029030	Bottle gourd (USVL1VR-Ls)	carlsiB804
Carg21932	Lsi06G003300	Bottle gourd (USVL1VR-Ls)	carlsiB806
Carg21932	Cp4.1LG04g10890	Cucurbita pepo (Zucchini)	carcpeB1238
Carg21932	CsGy1G027850	Cucumber (Gy14) v2	carcgybB0874
Carg21932	MELO3C015515.2	Melon (DHL92) v3.6.1	carmedB0882
Carg21932	MELO3C024356.2	Melon (DHL92) v3.6.1	carmedB0881
Carg21932	CsaV3_7G034490	Cucumber (Chinese Long) v3	carcucB0927
Carg21932	CsaV3_1G040980	Cucumber (Chinese Long) v3	carcucB0925
Carg21932	Cla97C03G065350	Watermelon (97103) v2	carwmbB0925
Carg21932	Cla97C09G162960	Watermelon (97103) v2	carwmbB0927
Carg21932	Bhi09G000273	Wax gourd	carwgoB1032
Carg21932	Bhi02G001516	Wax gourd	carwgoB1034

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21932	Carg13939	Silver-seed gourd	carcarB541

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21932	Silver-seed gourd	carcarB107
Carg21932	Silver-seed gourd	carcarB525
Carg21932	Silver-seed gourd	carcarB608
Carg21932	Silver-seed gourd	carcarB639
Carg21932	Cucumber (Gy14) v2	carcgybB0875
Carg21932	Cucumber (Gy14) v2	carcgybB0877
Carg21932	Cucumber (Gy14) v1	carcgyB1005
Carg21932	Cucurbita maxima (Rimu)	carcmaB1226
Carg21932	Cucurbita maxima (Rimu)	carcmaB1228
Carg21932	Cucurbita maxima (Rimu)	carcmaB1229
Carg21932	Cucurbita moschata (Rifu)	carcmoB1196
Carg21932	Cucurbita moschata (Rifu)	carcmoB1197
Carg21932	Cucurbita pepo (Zucchini)	carcpeB1236
Carg21932	Cucurbita pepo (Zucchini)	carcpeB1235
Carg21932	Cucurbita pepo (Zucchini)	carcpeB1237
Carg21932	Wild cucumber (PI 183967)	carcpiB0922
Carg21932	Cucumber (Chinese Long) v2	carcuB0902
Carg21932	Cucumber (Chinese Long) v3	carcucB0926
Carg21932	Bottle gourd (USVL1VR-Ls)	carlsiB803
Carg21932	Melon (DHL92) v3.5.1	carmeB0875
Carg21932	Melon (DHL92) v3.6.1	carmedB0883
Carg21932	Watermelon (Charleston Gray)	carwcgB0861
Carg21932	Watermelon (Charleston Gray)	carwcgB0862
Carg21932	Watermelon (97103) v1	carwmB0891
Carg21932	Watermelon (97103) v2	carwmbB0924
Carg21932	Wax gourd	carwgoB1031