Carg20917-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CGTCCTTCCCTTTTCTTTGAACATCCGAGCGCCGTACCGGAGATTCTCCCTCGAATCCGATCTCAAGGAGCTTCCTTTTGAACGATTAACAGGTTCTTTCTCTCTTCTTGCCTTTCGATCTTCCTCTGTTTCTCCGCCCTCTCTTCTCAATCTCTGTTGACTTTGGAAATTTCTTTTCCGAGAGTTAGGGCTAGGGTTTATATTCAGGAAAGCTAAAGATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGGCATTCTCCTTCTCTTTCTCTTTCTTCTTTAAATCTTAAACGCTTATTTATGATGTGTTTGATTTGATGGAGCTCTGTTTATCGCCGTGGATGTGATTTTGAAATGCAACTGCTTTTGTTCTTCATAAGTTAATAGCTCTTACATGAATGACTCCTTTAATGACTGGATGTTTGCAGACGGAAAGAAGCAAGTAAAGTAGGCCCCTTGATGGGAGTATTATTTTACGGATGTTGCAGTAGTTGGAGACCATTATATAATTATTTTTTAACCCTTTTCACAGACTATCTGAATCTCTAGGTTTGTAGTTGATTTTTTTTTTCATTAGAGGAACATGGGGGGAACATATGTCGGTTCACTCATTCTTCTTTTTCTATGAGCTTGTATTATTATTCATCTCTTGTTAATTAGGGCAAGTGGTTATTGTTCTTTCTTAATTGAAATGTGCCATGATGAATTAATGTCTTCAATTGAGAATTGATAATGACAAGGTAATTTGAAATCAATATATTTAACTGAATAAACTTATATGGATTTAGTTAAGTGCTCAAGATCAGATCCTTGTTATCATGTTTGAGTTAAAGTTATCGACAACGAATACTTTTTACGTGTGCAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTAAGTTGTTGTGTATGGTTTTGATTCTCTTTATATGCGCTTCTACCTTTGTTTATGGAGTCCATGAAGTTGTTGCATTGATTTTCTGTGGTACTAAAAACATATAGTTCAAAGTGGTTTGTGTCATGTATATAAGTAGATGATTTACTGTAACGGCCCAAGCCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTCCAGGCTTCACCTCAAGGTTTTTAAAACACTTCTGCTAGGGAAATGTTTCCAGCCCCTTATAAAGAATGTTTCATTCTCCTCCTCAACCGATGTGGGATCTCACAATCCACCTCCCTTCGGGGCCTAGCTTCCTTTTTGGCACTTGTTCCCTTCTCCAATCGATGTGGGACTCTAATCCACCCTCCTTCGAGCCCCAGCGTCATTTCTGACACACTGTCTCGTGTCCATTCCCCTTTGGGGTTCTGTCTCTAGCTAGCACATCGTCCGGTGTCGGGTTCTGATACCATTTGTAATAGCCCAAGCCTACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTTAAACTCGTCTGCTAGGGAGAAGTTTCCATACCCTTAGAATGATTCGTTCTCCTCTCCAACCGATGTGGGATCTCACATTTACCTTGCATGTTATTTGAAAGTAATGATTATGAATCTTGAAATTCATAAGCTGAGGGGTCTATGGGTGCTGGCTTTCTACACTATAAATCTTGCTTCTATTGCTGCATTTTTTAGTTAGGTATCTAGATCGAGTTTGCATTTCACAGACTGAACTCTCTTTTGCAATCTATTTCACATATTAATGAAATGGTCTTTGTTCTGATCAAGTATGCGTTTCTTATCTAAAATGAGATCAAATATGTGCTTCAGAATTGATATAAGGTAGTACATTTGTGAATATTTTGAGTCAAGTACGGTACAATCTTTTTTAATTTTTGATAGGTTTACATCATTTGCATCCTTTGTTATGCAATCATGTGCCTTTGTGTTTATATGGACTGCTAAAGTGTTGTATTTTCTAAAACTATTTGTCTTACATGGCTTTCGATTTCCCCACATGTATTTTACTTGAGTTCAATTTCGTCCCCATGTACTTGTAGTGTGCATGAGCTTGTGCTTGAGTTAATACAATTCTCGTAATTAGGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGGTTGGTAATTAATTAGGCCTCTGCTTCCCCTAAATTGATGTTGTATTGTACATCGTTCTTACCTGTGTTAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA CGTCCTTCCCTTTTCTTTGAACATCCGAGCGCCGTACCGGAGATTCTCCCTCGAATCCGATCTCAAGGAGCTTCCTTTTGAACGATTAACAGGGCTAGGGTTTATATTCAGGAAAGCTAAAGATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA ATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQIHQQHQQAMQGQMGLRPMGGANNGMHHPHHPEGTLGGAGAGGPARSSGQTDARGGGKQDSGDVGGADGQGSSAAGRGGDREETK
BLAST of Carg20917-RA vs. NCBI nr
Match: XP_022928756.1 (GRF1-interacting factor 3-like [Cucurbita moschata]) HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77 Identity = 210/216 (97.22%), Postives = 210/216 (97.22%), Query Frame = 0
BLAST of Carg20917-RA vs. NCBI nr
Match: XP_022974833.1 (GRF1-interacting factor 3-like [Cucurbita maxima] >XP_022975274.1 GRF1-interacting factor 3-like [Cucurbita maxima] >XP_023540251.1 GRF1-interacting factor 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77 Identity = 212/216 (98.15%), Postives = 212/216 (98.15%), Query Frame = 0
BLAST of Carg20917-RA vs. NCBI nr
Match: XP_016899446.1 (PREDICTED: GRF1-interacting factor 3 isoform X1 [Cucumis melo]) HSP 1 Score: 271.6 bits (693), Expect = 2.4e-69 Identity = 180/197 (91.37%), Postives = 181/197 (91.88%), Query Frame = 0
BLAST of Carg20917-RA vs. NCBI nr
Match: XP_011656394.1 (PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus]) HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68 Identity = 171/195 (87.69%), Postives = 172/195 (88.21%), Query Frame = 0
BLAST of Carg20917-RA vs. NCBI nr
Match: XP_016899447.1 (PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis melo]) HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65 Identity = 176/197 (89.34%), Postives = 177/197 (89.85%), Query Frame = 0
BLAST of Carg20917-RA vs. TAIR10
Match: AT4G00850.1 (GRF1-interacting factor 3) HSP 1 Score: 151.0 bits (380), Expect = 8.5e-37 Identity = 129/229 (56.33%), Postives = 143/229 (62.45%), Query Frame = 0
BLAST of Carg20917-RA vs. TAIR10
Match: AT1G01160.2 (GRF1-interacting factor 2) HSP 1 Score: 98.2 bits (243), Expect = 6.5e-21 Identity = 72/155 (46.45%), Postives = 82/155 (52.90%), Query Frame = 0
BLAST of Carg20917-RA vs. TAIR10
Match: AT5G28640.1 (SSXT family protein) HSP 1 Score: 97.8 bits (242), Expect = 8.5e-21 Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0
BLAST of Carg20917-RA vs. Swiss-Prot
Match: sp|Q93VH6|GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35 Identity = 129/229 (56.33%), Postives = 143/229 (62.45%), Query Frame = 0
BLAST of Carg20917-RA vs. Swiss-Prot
Match: sp|Q9MAL9|GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 7.1e-25 Identity = 72/121 (59.50%), Postives = 82/121 (67.77%), Query Frame = 0
BLAST of Carg20917-RA vs. Swiss-Prot
Match: sp|Q8L8A5|GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19 Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0
BLAST of Carg20917-RA vs. Swiss-Prot
Match: sp|Q8BW22|CREST_MOUSE (Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11 Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0
BLAST of Carg20917-RA vs. Swiss-Prot
Match: sp|Q91XJ0|CREST_RAT (Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss18l1 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11 Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0
BLAST of Carg20917-RA vs. TrEMBL
Match: tr|A0A1S4DTY1|A0A1S4DTY1_CUCME (GRF1-interacting factor 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 1.6e-69 Identity = 180/197 (91.37%), Postives = 181/197 (91.88%), Query Frame = 0
BLAST of Carg20917-RA vs. TrEMBL
Match: tr|A0A1S4DTX1|A0A1S4DTX1_CUCME (GRF1-interacting factor 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65 Identity = 176/197 (89.34%), Postives = 177/197 (89.85%), Query Frame = 0
BLAST of Carg20917-RA vs. TrEMBL
Match: tr|A0A0A0K7M8|A0A0A0K7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008810 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 5.2e-65 Identity = 169/195 (86.67%), Postives = 170/195 (87.18%), Query Frame = 0
BLAST of Carg20917-RA vs. TrEMBL
Match: tr|V4TWR5|V4TWR5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022233mg PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55 Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 0
BLAST of Carg20917-RA vs. TrEMBL
Match: tr|A0A067HFB6|A0A067HFB6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028287mg PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55 Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|