Carg20917 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20917
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GRF1-interacting factor like
Location	Cucurbita_argyrosperma_scaffold_141 : 348076 .. 350802 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCCTTCCCTTTTCTTTGAACATCCGAGCGCCGTACCGGAGATTCTCCCTCGAATCCGATCTCAAGGAGCTTCCTTTTGAACGATTAACAGGTTCTTTCTCTCTTCTTGCCTTTCGATCTTCCTCTGTTTCTCCGCCCTCTCTTCTCAATCTCTGTTGACTTTGGAAATTTCTTTTCCGAGAGTTAGGGCTAGGGTTTATATTCAGGAAAGCTAAAGATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGGCATTCTCCTTCTCTTTCTCTTTCTTCTTTAAATCTTAAACGCTTATTTATGATGTGTTTGATTTGATGGAGCTCTGTTTATCGCCGTGGATGTGATTTTGAAATGCAACTGCTTTTGTTCTTCATAAGTTAATAGCTCTTACATGAATGACTCCTTTAATGACTGGATGTTTGCAGACGGAAAGAAGCAAGTAAAGTAGGCCCCTTGATGGGAGTATTATTTTACGGATGTTGCAGTAGTTGGAGACCATTATATAATTATTTTTTAACCCTTTTCACAGACTATCTGAATCTCTAGGTTTGTAGTTGATTTTTTTTTTCATTAGAGGAACATGGGGGGAACATATGTCGGTTCACTCATTCTTCTTTTTCTATGAGCTTGTATTATTATTCATCTCTTGTTAATTAGGGCAAGTGGTTATTGTTCTTTCTTAATTGAAATGTGCCATGATGAATTAATGTCTTCAATTGAGAATTGATAATGACAAGGTAATTTGAAATCAATATATTTAACTGAATAAACTTATATGGATTTAGTTAAGTGCTCAAGATCAGATCCTTGTTATCATGTTTGAGTTAAAGTTATCGACAACGAATACTTTTTACGTGTGCAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTAAGTTGTTGTGTATGGTTTTGATTCTCTTTATATGCGCTTCTACCTTTGTTTATGGAGTCCATGAAGTTGTTGCATTGATTTTCTGTGGTACTAAAAACATATAGTTCAAAGTGGTTTGTGTCATGTATATAAGTAGATGATTTACTGTAACGGCCCAAGCCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTCCAGGCTTCACCTCAAGGTTTTTAAAACACTTCTGCTAGGGAAATGTTTCCAGCCCCTTATAAAGAATGTTTCATTCTCCTCCTCAACCGATGTGGGATCTCACAATCCACCTCCCTTCGGGGCCTAGCTTCCTTTTTGGCACTTGTTCCCTTCTCCAATCGATGTGGGACTCTAATCCACCCTCCTTCGAGCCCCAGCGTCATTTCTGACACACTGTCTCGTGTCCATTCCCCTTTGGGGTTCTGTCTCTAGCTAGCACATCGTCCGGTGTCGGGTTCTGATACCATTTGTAATAGCCCAAGCCTACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTTAAACTCGTCTGCTAGGGAGAAGTTTCCATACCCTTAGAATGATTCGTTCTCCTCTCCAACCGATGTGGGATCTCACATTTACCTTGCATGTTATTTGAAAGTAATGATTATGAATCTTGAAATTCATAAGCTGAGGGGTCTATGGGTGCTGGCTTTCTACACTATAAATCTTGCTTCTATTGCTGCATTTTTTAGTTAGGTATCTAGATCGAGTTTGCATTTCACAGACTGAACTCTCTTTTGCAATCTATTTCACATATTAATGAAATGGTCTTTGTTCTGATCAAGTATGCGTTTCTTATCTAAAATGAGATCAAATATGTGCTTCAGAATTGATATAAGGTAGTACATTTGTGAATATTTTGAGTCAAGTACGGTACAATCTTTTTTAATTTTTGATAGGTTTACATCATTTGCATCCTTTGTTATGCAATCATGTGCCTTTGTGTTTATATGGACTGCTAAAGTGTTGTATTTTCTAAAACTATTTGTCTTACATGGCTTTCGATTTCCCCACATGTATTTTACTTGAGTTCAATTTCGTCCCCATGTACTTGTAGTGTGCATGAGCTTGTGCTTGAGTTAATACAATTCTCGTAATTAGGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGGTTGGTAATTAATTAGGCCTCTGCTTCCCCTAAATTGATGTTGTATTGTACATCGTTCTTACCTGTGTTAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA

mRNA sequence

CGTCCTTCCCTTTTCTTTGAACATCCGAGCGCCGTACCGGAGATTCTCCCTCGAATCCGATCTCAAGGAGCTTCCTTTTGAACGATTAACAGGGCTAGGGTTTATATTCAGGAAAGCTAAAGATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA

Coding sequence (CDS)

ATGCAGCAACCACCGCAAATGATGCCGATGATGCCTTCATTTCCCCCCACCAATATCACTTCCGAGCAGATTCAAAAGTATCTGGATGAGAACAAAAAGTTGATATTGGCCATACTTGACAACCAAAATCTGGGGAAACTAAACGAATGTGCTCAGTACCAAGCCCAACTTCAGAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCACAGGCACCAGCTATGCCTCCACAGAATGGTCAGATGGCTCCACATCCTGCAATGCAGCAAGGGGGTTATTATATGCAGCACCCTCAGGCAGCTATAATGGCACAGCAATCAGGACTTTTCCCTCCAAAAGTTCCATTGCAGTTCGGAAACCCTCATCAATTACAGGATCCACAACAGCAGATACACCAGCAACACCAGCAAGCAATGCAAGGGCAAATGGGACTAAGACCTATGGGAGGGGCCAACAATGGCATGCATCACCCACATCATCCCGAGGGGACCCTTGGGGGTGCTGGTGCTGGAGGGCCTGCTCGAAGTTCCGGGCAAACCGATGCCCGTGGAGGTGGCAAGCAGGACTCTGGTGATGTGGGAGGTGCTGATGGTCAGGGGAGCTCAGCTGCTGGTCGGGGTGGCGATCGAGAGGAAACTAAGTAA

Protein sequence

MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQFGNPHQLQDPQQQIHQQHQQAMQGQMGLRPMGGANNGMHHPHHPEGTLGGAGAGGPARSSGQTDARGGGKQDSGDVGGADGQGSSAAGRGGDREETK

Homology

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BLAST of Carg20917 vs. NCBI nr
Match: XP_022928756.1 (GRF1-interacting factor 3-like [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 210/216 (97.22%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPP   QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPP---QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRSSG 180

Query: 181 QTDARGGGKQDSGDVGGADGQGSSAAGRGGDREETK 217
           QTDARGGGKQDSGDVGGADGQGSSAAGRGGD EETK
Sbjct: 181 QTDARGGGKQDSGDVGGADGQGSSAAGRGGDGEETK 213

[Close]

BLAST of Carg20917 vs. NCBI nr
Match: XP_022974833.1 (GRF1-interacting factor 3-like [Cucurbita maxima] >XP_022975274.1 GRF1-interacting factor 3-like [Cucurbita maxima] >XP_023540251.1 GRF1-interacting factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 212/216 (98.15%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPP   QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPP---QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180

Query: 181 QTDARGGGKQDSGDVGGADGQGSSAAGRGGDREETK 217
           QTDARGGGKQDSGDVGGADGQGSSAAGRGGD EETK
Sbjct: 181 QTDARGGGKQDSGDVGGADGQGSSAAGRGGDGEETK 213

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BLAST of Carg20917 vs. NCBI nr
Match: XP_016899446.1 (PREDICTED: GRF1-interacting factor 3 isoform X1 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 2.4e-69
Identity = 180/197 (91.37%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            RSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDVGG 198
           QTD RG GKQDS DVGG
Sbjct: 181 QTDGRGSGKQDSADVGG 197

[Close]

BLAST of Carg20917 vs. NCBI nr
Match: XP_011656394.1 (PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 171/195 (87.69%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXX      XXXXXXXXX             RSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXPIGGANXXXXXXXXXESTLGGASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDV 196
           QTD RG GKQDS DV
Sbjct: 181 QTDGRGSGKQDSADV 195

[Close]

BLAST of Carg20917 vs. NCBI nr
Match: XP_016899447.1 (PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65
Identity = 176/197 (89.34%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPP   QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPP---QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            RSSG
Sbjct: 121 GNPHQLQDPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDVGG 198
           QTD RG GKQDS DVGG
Sbjct: 181 QTDGRGSGKQDSADVGG 194

[Close]

BLAST of Carg20917 vs. TAIR10
Match: AT4G00850.1 (GRF1-interacting factor 3)

HSP 1 Score: 151.0 bits (380), Expect = 8.5e-37
Identity = 129/229 (56.33%), Postives = 143/229 (62.45%), Query Frame = 0


Query: 1   MQQPPQMMPM-MPSFPPT-NITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQ 60
           MQQ PQM+PM +PSFPPT NIT+EQIQKYLDENKKLI+AIL+NQNLGKL ECAQYQA LQ
Sbjct: 1   MQQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQ 60

Query: 61  KNLMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQ-------GGYYMQHPQAAIMAQQ--S 120
           KNLMYLAAIADAQPQ PA    +G M P               Y+MQ  QA  MAQQ   
Sbjct: 61  KNLMYLAAIADAQPQPPAATLTSGAMTPQAMAPNXXXXXXXXSYFMQQHQAVGMAQQIPP 120

Query: 121 GLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           G+FPP+ PLQFG+PHQ  DPQQQ                           XXXXXXXXXX
Sbjct: 121 GIFPPRGPLQFGSPHQFLDPQQQ--------LHQQAMQGHMGIRPMGLNNXXXXXXXXXX 180

Query: 181 XXXXXXXRSSGQTDARGGGKQDSGDV--GGADGQGSSAAGRGGDREETK 217
           XXXXXXX      D    GK D  ++   GADGQG SAA  GG   +T+
Sbjct: 181 XXXXXXXXXXXXNDXXXXGKPDGTNMSQSGADGQGGSAARHGGGDAKTE 221

[Close]

BLAST of Carg20917 vs. TAIR10
Match: AT1G01160.2 (GRF1-interacting factor 2)

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-21
Identity = 72/155 (46.45%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 2   QQPPQMMPMMPSFPP-TNITSEQIQK---------------------------------- 61
           QQ PQM PM+PS PP  NIT+EQIQK                                  
Sbjct: 4   QQSPQMFPMVPSIPPANNITTEQIQKMLGGSGNFESGFQEWTLKLDACLMLLFCTFSWLD 63

Query: 62  YLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLAAI-----ADAQPQAPAMPPQN 116
           YLDENKKLI+AI++NQNLGKL ECAQYQA LQKNLMYLAAI                   
Sbjct: 64  YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIXXXXXXXXXXXXXXXXXXX 123

[Close]

BLAST of Carg20917 vs. TAIR10
Match: AT5G28640.1 (SSXT family protein)

HSP 1 Score: 97.8 bits (242), Expect = 8.5e-21
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 6  QMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLA 65
          QM PMM  + P+N+TS+ IQ+YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLA
Sbjct: 7  QMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLA 66

Query: 66 AIADAQPQAPAMPPQNG 83
          AIAD+QPQ P++  Q G
Sbjct: 67 AIADSQPQPPSVHSQYG 83

[Close]

BLAST of Carg20917 vs. Swiss-Prot
Match: sp|Q93VH6|GIF3_ARATH (GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 129/229 (56.33%), Postives = 143/229 (62.45%), Query Frame = 0


Query: 1   MQQPPQMMPM-MPSFPPT-NITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQ 60
           MQQ PQM+PM +PSFPPT NIT+EQIQKYLDENKKLI+AIL+NQNLGKL ECAQYQA LQ
Sbjct: 1   MQQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQ 60

Query: 61  KNLMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQ-------GGYYMQHPQAAIMAQQ--S 120
           KNLMYLAAIADAQPQ PA    +G M P               Y+MQ  QA  MAQQ   
Sbjct: 61  KNLMYLAAIADAQPQPPAATLTSGAMTPQAMAPNXXXXXXXXSYFMQQHQAVGMAQQIPP 120

Query: 121 GLFPPKVPLQFGNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           G+FPP+ PLQFG+PHQ  DPQQQ                           XXXXXXXXXX
Sbjct: 121 GIFPPRGPLQFGSPHQFLDPQQQ--------LHQQAMQGHMGIRPMGLNNXXXXXXXXXX 180

Query: 181 XXXXXXXRSSGQTDARGGGKQDSGDV--GGADGQGSSAAGRGGDREETK 217
           XXXXXXX      D    GK D  ++   GADGQG SAA  GG   +T+
Sbjct: 181 XXXXXXXXXXXXNDXXXXGKPDGTNMSQSGADGQGGSAARHGGGDAKTE 221

[Close]

BLAST of Carg20917 vs. Swiss-Prot
Match: sp|Q9MAL9|GIF2_ARATH (GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-25
Identity = 72/121 (59.50%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 2   QQPPQMMPMMPSFPP-TNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 61
           QQ PQM PM+PS PP  NIT+EQIQKYLDENKKLI+AI++NQNLGKL ECAQYQA LQKN
Sbjct: 4   QQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKN 63

Query: 62  LMYLAAI-----ADAQPQAPAMPPQNGQMA-PHPAMQQGGYYMQHPQAAIMAQQSGLFPP 116
           LMYLAAI                    QMA PH  MQ   Y+MQHPQA+     +G+F P
Sbjct: 64  LMYLAAIXXXXXXXXXXXXXXXXXXXXQMATPHSGMQPPSYFMQHPQAS----PAGIFAP 120

[Close]

BLAST of Carg20917 vs. Swiss-Prot
Match: sp|Q8L8A5|GIF1_ARATH (GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 6  QMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLA 65
          QM PMM  + P+N+TS+ IQ+YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLA
Sbjct: 7  QMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLA 66

Query: 66 AIADAQPQAPAMPPQNG 83
          AIAD+QPQ P++  Q G
Sbjct: 67 AIADSQPQPPSVHSQYG 83

[Close]

BLAST of Carg20917 vs. Swiss-Prot
Match: sp|Q8BW22|CREST_MOUSE (Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 19  ITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLAAIADA----QPQA 78
           +T + IQK LDEN  LI  ILD Q+ GK  EC QYQ  L +NL+YLA IAD+    Q   
Sbjct: 16  VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 79  PAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQ 120
           PA P QN  + P    Q G     HPQ ++    S   PP   +Q
Sbjct: 76  PAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQ 120

[Close]

BLAST of Carg20917 vs. Swiss-Prot
Match: sp|Q91XJ0|CREST_RAT (Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss18l1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 19  ITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKNLMYLAAIADA----QPQA 78
           +T + IQK LDEN  LI  ILD Q+ GK  EC QYQ  L +NL+YLA IAD+    Q   
Sbjct: 16  VTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLL 75

Query: 79  PAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQ 120
           PA P QN  + P    Q G     HPQ ++    S   PP   +Q
Sbjct: 76  PAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQ 120

[Close]

BLAST of Carg20917 vs. TrEMBL
Match: tr|A0A1S4DTY1|A0A1S4DTY1_CUCME (GRF1-interacting factor 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.6e-69
Identity = 180/197 (91.37%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            RSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDVGG 198
           QTD RG GKQDS DVGG
Sbjct: 181 QTDGRGSGKQDSADVGG 197

[Close]

BLAST of Carg20917 vs. TrEMBL
Match: tr|A0A1S4DTX1|A0A1S4DTX1_CUCME (GRF1-interacting factor 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 176/197 (89.34%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPP   QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPP---QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            RSSG
Sbjct: 121 GNPHQLQDPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTLGSASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDVGG 198
           QTD RG GKQDS DVGG
Sbjct: 181 QTDGRGSGKQDSADVGG 194

[Close]

BLAST of Carg20917 vs. TrEMBL
Match: tr|A0A0A0K7M8|A0A0A0K7M8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008810 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.2e-65
Identity = 169/195 (86.67%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQMMPMMPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECAQYQAQLQKN
Sbjct: 1   MQQPPQMMPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAPAMPP   QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF
Sbjct: 61  LMYLAAIADAQPQAPAMPP---QMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120

Query: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSSG 180
           GNPHQLQDPQQQXXXXXXXXXXXXXXXX     XXXXXXXXXX             RSSG
Sbjct: 121 GNPHQLQDPQQQXXXXXXXXXXXXXXXXPIGGAXXXXXXXXXXESTLGGASAGGPPRSSG 180

Query: 181 QTDARGGGKQDSGDV 196
           QTD RG GKQDS DV
Sbjct: 181 QTDGRGSGKQDSADV 192

[Close]

BLAST of Carg20917 vs. TrEMBL
Match: tr|V4TWR5|V4TWR5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022233mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQM+P+MPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECA YQAQLQKN
Sbjct: 1   MQQPPQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLTECAHYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAP MPP   QMAPHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF
Sbjct: 61  LMYLAAIADAQPQAPTMPP---QMAPHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQF 120

Query: 121 GNPHQLQDPQQQ 133
            NPHQLQDPQQQ
Sbjct: 121 NNPHQLQDPQQQ 129

[Close]

BLAST of Carg20917 vs. TrEMBL
Match: tr|A0A067HFB6|A0A067HFB6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028287mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQPPQMMPMMPSFPPTNITSEQIQKYLDENKKLILAILDNQNLGKLNECAQYQAQLQKN 60
           MQQPPQM+P+MPSFPPTNIT+EQIQKYLDENKKLILAILDNQNLGKL ECA YQAQLQKN
Sbjct: 1   MQQPPQMIPVMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLTECAHYQAQLQKN 60

Query: 61  LMYLAAIADAQPQAPAMPPQNGQMAPHPAMQQGGYYMQHPQAAIMAQQSGLFPPKVPLQF 120
           LMYLAAIADAQPQAP MPP   QMAPHPAMQ  GYYMQHPQAA MAQQ G+FP K+PLQF
Sbjct: 61  LMYLAAIADAQPQAPTMPP---QMAPHPAMQASGYYMQHPQAAAMAQQQGIFPQKMPLQF 120

Query: 121 GNPHQLQDPQQQ 133
            NPHQLQDPQQQ
Sbjct: 121 NNPHQLQDPQQQ 129

The following BLAST results are available for this feature:

BLAST of Carg20917 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928756.1	1.8e-77	97.22	GRF1-interacting factor 3-like [Cucurbita moschata]	[more]
XP_022974833.1	1.8e-77	98.15	GRF1-interacting factor 3-like [Cucurbita maxima] >XP_022975274.1 GRF1-interacti...	[more]
XP_016899446.1	2.4e-69	91.37	PREDICTED: GRF1-interacting factor 3 isoform X1 [Cucumis melo]	[more]
XP_011656394.1	2.0e-68	87.69	PREDICTED: GRF1-interacting factor 2 isoform X1 [Cucumis sativus]	[more]
XP_016899447.1	4.6e-65	89.34	PREDICTED: GRF1-interacting factor 3 isoform X2 [Cucumis melo]	[more]

BLAST of Carg20917 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G00850.1	8.5e-37	56.33	GRF1-interacting factor 3	[more]
AT1G01160.2	6.5e-21	46.45	GRF1-interacting factor 2	[more]
AT5G28640.1	8.5e-21	63.64	SSXT family protein	[more]

BLAST of Carg20917 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93VH6\|GIF3_ARATH	1.5e-35	56.33	GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1	[more]
sp\|Q9MAL9\|GIF2_ARATH	7.1e-25	59.50	GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1	[more]
sp\|Q8L8A5\|GIF1_ARATH	1.5e-19	63.64	GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1	[more]
sp\|Q8BW22\|CREST_MOUSE	3.4e-11	43.81	Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1	[more]
sp\|Q91XJ0\|CREST_RAT	3.4e-11	43.81	Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss...	[more]

BLAST of Carg20917 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DTY1\|A0A1S4DTY1_CUCME	1.6e-69	91.37	GRF1-interacting factor 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=...	[more]
tr\|A0A1S4DTX1\|A0A1S4DTX1_CUCME	3.1e-65	89.34	GRF1-interacting factor 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485532 PE=...	[more]
tr\|A0A0A0K7M8\|A0A0A0K7M8_CUCSA	5.2e-65	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008810 PE=4 SV=1	[more]
tr\|V4TWR5\|V4TWR5_9ROSI	1.7e-55	87.12	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10022233mg PE=4 ...	[more]
tr\|A0A067HFB6\|A0A067HFB6_CITSI	1.7e-55	87.12	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028287mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003713	transcription coactivator activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007726	SS18_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003713	transcription coactivator activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20917-RA	Carg20917-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007726	SS18 family	PFAM	PF05030	SSXT	coord: 18..73 e-value: 3.8E-24 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..143
None	No IPR available	PANTHER	PTHR23107	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	coord: 1..208
None	No IPR available	PANTHER	PTHR23107:SF0	GRF1-INTERACTING FACTOR 2-RELATED	coord: 1..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20917	CmaCh06G009900	Cucurbita maxima (Rimu)	carcmaB1376
Carg20917	CmoCh06G010130	Cucurbita moschata (Rifu)	carcmoB1332
Carg20917	Cp4.1LG08g00560	Cucurbita pepo (Zucchini)	carcpeB1380

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20917	Cucumber (Gy14) v2	carcgybB0980
Carg20917	Cucumber (Gy14) v1	carcgyB1110
Carg20917	Cucurbita maxima (Rimu)	carcmaB1371
Carg20917	Cucurbita maxima (Rimu)	carcmaB1373
Carg20917	Cucurbita moschata (Rifu)	carcmoB1330
Carg20917	Cucurbita pepo (Zucchini)	carcpeB1379
Carg20917	Wild cucumber (PI 183967)	carcpiB1031
Carg20917	Cucumber (Chinese Long) v2	carcuB1007
Carg20917	Cucumber (Chinese Long) v3	carcucB1037
Carg20917	Bottle gourd (USVL1VR-Ls)	carlsiB907
Carg20917	Melon (DHL92) v3.5.1	carmeB0968
Carg20917	Melon (DHL92) v3.6.1	carmedB0978
Carg20917	Watermelon (Charleston Gray)	carwcgB0968
Carg20917	Watermelon (97103) v1	carwmB0992
Carg20917	Watermelon (97103) v2	carwmbB1047
Carg20917	Wax gourd	carwgoB1162