Carg20872-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20872-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative
Location	Cucurbita_argyrosperma_scaffold_141 : 51682 .. 52098 (-)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

mRNA sequence

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

Coding sequence (CDS)

ATGACAGAGCCGCCATTGAAACCTGTTCTCCAGAAGCCTCCGGGGTATAAAGAACTGAATCTCGCTGCTCAGCCGGTGGTGAGACCGTCGGCGAGGAAACTGATTCTTCCTTCGCCGATGAACCAGAAGAACAAGAAGCGACGGAGCTTCTGCCGTGGATGCTGTTGTTTCCTCTGCTTTTTCCTTCTGGTTCTGATCGTTGTAGCTGTCGCCGCTGGTGGAGTTTTATACCTCTGGTTTGAGCCAAAACTCCCCGTATTTCATCTCCAATTATTCCGAATCTTGAAATTGAACGTCACCGACAAATCGGACGGCTCGTATCTAAACGCGAGAACCCTCGGTCGTATCGAAATCAAGAACCCTAACTCGAAGTTATCACTGAATTACGGCGATATCGAGATCAAAATCGCCGCTTAA

Protein sequence

MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNKKRRSFCRGCCCFLCFFLLVLIVVAVAAGGVLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKNPNSKLSLNYGDIEIKIAA

Homology

[Close]

BLAST of Carg20872-RA vs. NCBI nr
Match: XP_022933901.1 (NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933908.1 NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933915.1 NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872-RA vs. NCBI nr
Match: XP_022933893.1 (NDR1/HIN1-like protein 6 isoform X1 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX
Sbjct: 62  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 121

Query: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 122 XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 181

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 182 PNSKLSLNYGDIEIKIAA 199

[Close]

BLAST of Carg20872-RA vs. NCBI nr
Match: XP_023539044.1 (NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo] >XP_023539045.1 NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 5.1e-49
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX
Sbjct: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 121 PNSKLSLNYGDIEIKIAA 138

[Close]

BLAST of Carg20872-RA vs. NCBI nr
Match: XP_022974637.1 (NDR1/HIN1-like protein 6 isoform X2 [Cucurbita maxima] >XP_022975666.1 NDR1/HIN1-like protein 6 isoform X2 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 8.1e-47
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQ  XXXXXXXXXXXXXXXX
Sbjct: 50  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQXXXXXXXXXXXXXXXXXX 109

Query: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRI KLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 110 XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRISKLNVTDKSDGSYLNARTLGRIEIKN 169

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 170 PNSKLSLNYGDIEIKIAA 187

[Close]

BLAST of Carg20872-RA vs. NCBI nr
Match: XP_022974636.1 (NDR1/HIN1-like protein 6 isoform X1 [Cucurbita maxima] >XP_022975665.1 NDR1/HIN1-like protein 6 isoform X1 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 8.1e-47
Identity = 135/138 (97.83%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXX 60
           MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQ  XXXXXXXXXXXXXXXX
Sbjct: 54  MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQXXXXXXXXXXXXXXXXXX 113

Query: 61  XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKN 120
           XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRI KLNVTDKSDGSYLNARTLGRIEIKN
Sbjct: 114 XXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRISKLNVTDKSDGSYLNARTLGRIEIKN 173

Query: 121 PNSKLSLNYGDIEIKIAA 139
           PNSKLSLNYGDIEIKIAA
Sbjct: 174 PNSKLSLNYGDIEIKIAA 191

[Close]

BLAST of Carg20872-RA vs. TAIR10
Match: AT2G46300.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-11
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 77  YLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKNPNSKLSLNYGDIEIKI 136
           YLWF+PKLP F L  FR+    + D  DG+ L+A  + R+E+KNPNSKL   YG+  + +
Sbjct: 82  YLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVARVEMKNPNSKLVFYYGNTAVDL 141

Query: 137 A 138
           +
Sbjct: 142 S 142

[Close]

BLAST of Carg20872-RA vs. TAIR10
Match: AT1G01453.2 (unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 63/141 (44.68%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 3   EPPLKPVLQKPPGYKELNLAAQPVVRPSARKLI---LPSPMNQKN-XXXXXXXXXXXXXX 62
           E PL+P LQKPPG+++     QP   PS    +    P P++  +            XXX
Sbjct: 17  EKPLQPALQKPPGFRDQQ--NQPSAPPSGTATLPRRRPRPIHPADKKRRCSFCRVFCXXX 76

Query: 63  XXXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTD-KSDG--SYLNARTLGR 122
           XXXXXXXXXXXXXXXXX +LW+ PKLPV  L  F+I   N +D KSD   S+L+A T   
Sbjct: 77  XXXXXXXXXXXXXXXXXXFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTTSV 136

Query: 123 IEIKNPNSKLSLNYGDIEIKI 137
           ++ +NPN KL+  YGD ++ +
Sbjct: 137 LDFRNPNGKLTFYYGDTDVAV 155

[Close]

BLAST of Carg20872-RA vs. TAIR10
Match: AT4G01110.1 (unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-07
Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = 0


Query: 3   EPPLKPVLQKPPGYKELNLAAQPVV---------RPSARKLILPSPMNQKNXXXXXXXXX 62
           E  LKPVLQKPPGY+EL+   Q  +              K  +P+               
Sbjct: 4   ETLLKPVLQKPPGYRELHSQPQTPLGSXXXXXXXXXXXXKHAIPAAFYPTKKRQWSRCRV 63

Query: 63  XXXXXXXXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDG---SYLNA 122
           XXXXXXXXXXXXXXXXXXXXXX  L++ P+LPV  L  FR+   N +    G   S L A
Sbjct: 64  XXXXXXXXXXXXXXXXXXXXXXXXLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLTA 123

Query: 123 RTLGRIEIKNPNSKLSLNYGDIEIKIA 138
               R++ +NPN KL   YG++++ ++
Sbjct: 124 EATARLDFRNPNGKLRYYYGNVDVAVS 150

[Close]

BLAST of Carg20872-RA vs. TrEMBL
Match: tr|A0A0A0L3Z7|A0A0A0L3Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120370 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.3e-36
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 4   PPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXXXXXX 63
           PPLKP+LQKPPG+K+ N  A PV RP ARKLILPSP++Q  XXXXXXXXXXXXXXXXXXX
Sbjct: 5   PPLKPILQKPPGFKDPNHIALPVPRPPARKLILPSPLSQXXXXXXXXXXXXXXXXXXXXX 64

Query: 64  XXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIKNPNS 123
           XXXXXXXXX   LYLWFEPKLPV HLQ FRI K NVTDKSDGSYLNA+T+GRIEIKNPNS
Sbjct: 65  XXXXXXXXXGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIKNPNS 124

Query: 124 KLSLNYGDIEIKIAA 139
           KLSLNYGDIE++IAA
Sbjct: 125 KLSLNYGDIEVQIAA 139

[Close]

BLAST of Carg20872-RA vs. TrEMBL
Match: tr|A0A1S3AV73|A0A1S3AV73_CUCME (uncharacterized protein LOC103483219 OS=Cucumis melo OX=3656 GN=LOC103483219 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 113/139 (81.29%), Postives = 123/139 (88.49%), Query Frame = 0


Query: 1   MTEP-PLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXX 60
           M EP PLKP+LQKPPG+K+ N  A PV RP ARKLILPSP++Q  XXXXXXXXXXXXXXX
Sbjct: 1   MAEPTPLKPILQKPPGFKDPNHTALPVPRPPARKLILPSPLSQXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIK 120
           XXXXXXXXXXXXXXX LYLWFE KLPV HLQ FRI K NVTDKSDGSYLNA+T+GRIEIK
Sbjct: 61  XXXXXXXXXXXXXXXVLYLWFERKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEIKIAA 139
           NPNSKLSLNYGDIE+++AA
Sbjct: 121 NPNSKLSLNYGDIEVQVAA 139

[Close]

BLAST of Carg20872-RA vs. TrEMBL
Match: tr|A0A2P5R703|A0A2P5R703_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20466 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 78/139 (56.12%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNL--AAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXX 60
           M+EPPLKPVLQKPPGY++ NL  AAQ   RP  RK +LP   N +        XXXXXXX
Sbjct: 1   MSEPPLKPVLQKPPGYRDPNLPAAAQSGFRPPPRKPVLPPSFNPRR-RNRSFCXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEI 120
           XXXXXXXXXXXXX     Y+WF+PK PVFH++ FRI + NVT++ DG+YL+A T  R+E+
Sbjct: 61  XXXXXXXXXXXXXGGLVFYIWFDPKFPVFHIRSFRITRFNVTERPDGTYLDATTTTRLEM 120

Query: 121 KNPNSKLSLNYGDIEIKIA 138
           KNPN K++  YG  E+ ++
Sbjct: 121 KNPNVKITYYYGKTEVGVS 138

[Close]

BLAST of Carg20872-RA vs. TrEMBL
Match: tr|A0A2P4J097|A0A2P4J097_QUESU (Ndr1/hin1-like protein 10 OS=Quercus suber OX=58331 GN=CFP56_71393 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 78/137 (56.93%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 1   MTEPPLKPVLQKPPGYKELNLAAQPVVRPSARKLILPSPMN-QKNXXXXXXXXXXXXXXX 60
           M EPPLKPVLQKPPG+++ N+      +P  R  +LP   + +K       XXXXXXXXX
Sbjct: 1   MAEPPLKPVLQKPPGFRDQNIPTHSAPKPVMRTPLLPQSYHPKKRRSRGCTXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIK 120
           XXXXXXXXXXXX     Y+WF PK+P FHLQ FRI + NVT K DG+YL+A+TL R+E K
Sbjct: 61  XXXXXXXXXXXXASAIFYIWFLPKIPAFHLQSFRIPRFNVTVKPDGTYLDAQTLIRVEAK 120

Query: 121 NPNSKLSLNYGDIEIKI 137
           NPN KLSL Y DI + +
Sbjct: 121 NPNGKLSLFYKDIHVNV 137

[Close]

BLAST of Carg20872-RA vs. TrEMBL
Match: tr|W9SAG5|W9SAG5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003064 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 77/138 (55.80%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 1   MTEPPLK-PVLQKPPGYKELNLAAQPVVRPSARKLILPSPMNQKNXXXXXXXXXXXXXXX 60
           M E PLK P LQKPPGY++     +PV RP  RK +LP+  + +           XXXXX
Sbjct: 1   MAEQPLKPPPLQKPPGYRDPAAPGKPVARPPQRKPVLPASFHPRK-RRRNWCRTCXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXLYLWFEPKLPVFHLQLFRILKLNVTDKSDGSYLNARTLGRIEIK 120
           XXXXXXXXXXXXX    YLWFEPKLPVFHLQ  RI + NVT K DG+YL+A T+ RIE+K
Sbjct: 61  XXXXXXXXXXXXXGGIFYLWFEPKLPVFHLQSLRIPQFNVTVKPDGTYLDAGTVTRIEVK 120

Query: 121 NPNSKLSLNYGDIEIKIA 138
           NPN KL L YG   ++++
Sbjct: 121 NPNGKLELYYGGTHVEVS 137

The following BLAST results are available for this feature:

BLAST of Carg20872-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933901.1	5.1e-49	100.00	NDR1/HIN1-like protein 6 isoform X2 [Cucurbita moschata] >XP_022933908.1 NDR1/HI...	[more]
XP_022933893.1	5.1e-49	100.00	NDR1/HIN1-like protein 6 isoform X1 [Cucurbita moschata]	[more]
XP_023539044.1	5.1e-49	100.00	NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo] >XP_023539045.1 NDR1/HIN1-...	[more]
XP_022974637.1	8.1e-47	97.83	NDR1/HIN1-like protein 6 isoform X2 [Cucurbita maxima] >XP_022975666.1 NDR1/HIN1...	[more]
XP_022974636.1	8.1e-47	97.83	NDR1/HIN1-like protein 6 isoform X1 [Cucurbita maxima] >XP_022975665.1 NDR1/HIN1...	[more]

BLAST of Carg20872-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46300.1	6.7e-11	45.90	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G01453.2	1.6e-09	44.68	unknown protein	[more]
AT4G01110.1	3.4e-07	40.82	unknown protein	[more]

BLAST of Carg20872-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20872-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3Z7\|A0A0A0L3Z7_CUCSA	7.3e-36	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120370 PE=4 SV=1	[more]
tr\|A0A1S3AV73\|A0A1S3AV73_CUCME	1.0e-34	81.29	uncharacterized protein LOC103483219 OS=Cucumis melo OX=3656 GN=LOC103483219 PE=...	[more]
tr\|A0A2P5R703\|A0A2P5R703_GOSBA	1.1e-20	56.12	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD20466 PE=4 SV...	[more]
tr\|A0A2P4J097\|A0A2P4J097_QUESU	7.3e-20	56.93	Ndr1/hin1-like protein 10 OS=Quercus suber OX=58331 GN=CFP56_71393 PE=4 SV=1	[more]
tr\|W9SAG5\|W9SAG5_9ROSA	2.8e-19	55.80	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003064 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20872	Carg20872	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20872-RA.CDS.1	Carg20872-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20872-RA.exon.1	Carg20872-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20872-RA	Carg20872-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31234:SF12	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..137
None	No IPR available	PANTHER	PTHR31234	FAMILY NOT NAMED	coord: 1..137