Carg20735-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20735-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GPI-anchored adhesin-like protein
Location	Cucurbita_argyrosperma_scaffold_134 : 7071 .. 7514 (+)
Sequence length	444

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

mRNA sequence

ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

Coding sequence (CDS)

ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

Protein sequence

MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEENADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAESISTDGGGLMASGDSDWHLCYKNGLFDC

Homology

[Close]

BLAST of Carg20735-RA vs. NCBI nr
Match: XP_022928860.1 (uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928861.1 uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928862.1 uncharacterized protein LOC111435650 [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 119/147 (80.95%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE
Sbjct: 469 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 528

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 529 NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 588

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCYKNGLFDC
Sbjct: 589 XXXXXXXLMASGDSDWHLCYKNGLFDC 615

[Close]

BLAST of Carg20735-RA vs. NCBI nr
Match: XP_023550090.1 (uncharacterized protein LOC111808388 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 117/147 (79.59%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE
Sbjct: 460 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 519

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSI+LSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 520 NADTCSISLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 579

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCY+NGLFDC
Sbjct: 580 XXXXXXXLMASGDSDWHLCYRNGLFDC 606

[Close]

BLAST of Carg20735-RA vs. NCBI nr
Match: XP_022969790.1 (uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969792.1 uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969793.1 uncharacterized protein LOC111468888 [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 117/147 (79.59%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSD+EEE
Sbjct: 464 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDNEEE 523

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSI+LSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 524 NADTCSISLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 583

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCYKNGLFDC
Sbjct: 584 XXXXXXXLMASGDSDWHLCYKNGLFDC 610

[Close]

BLAST of Carg20735-RA vs. NCBI nr
Match: XP_011649077.1 (PREDICTED: uncharacterized protein LOC105434579 [Cucumis sativus] >KGN61440.1 hypothetical protein Csa_2G122530 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDI+ KTPL+H DCE DPI+ NSSCS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDII-KTPLEHTDCEVDPIVSNSSCSPGLLVNEEAEEYGKFKEMQSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]

BLAST of Carg20735-RA vs. NCBI nr
Match: XP_016902071.1 (PREDICTED: uncharacterized protein LOC103496888 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDIL KTPL+  D E DPI+  S CS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDIL-KTPLELTDFEVDPIVSTSFCSPGLLVNEEAEEYGKCKEMRSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]

BLAST of Carg20735-RA vs. TAIR10
Match: AT2G43990.1 (unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.0e-06
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 115 CCCAESISTDGGGLMASGDSDWHLCYKN 143
           C  AESISTDGGGL+ S DS+W  CYKN
Sbjct: 605 CSAAESISTDGGGLICSEDSNWMACYKN 632

[Close]

BLAST of Carg20735-RA vs. TrEMBL
Match: tr|A0A0A0LHN8|A0A0A0LHN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122530 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 9.4e-58
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDI+ KTPL+H DCE DPI+ NSSCS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDII-KTPLEHTDCEVDPIVSNSSCSPGLLVNEEAEEYGKFKEMQSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]

BLAST of Carg20735-RA vs. TrEMBL
Match: tr|A0A1S4E1G9|A0A1S4E1G9_CUCME (uncharacterized protein LOC103496888 OS=Cucumis melo OX=3656 GN=LOC103496888 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.8e-54
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDIL KTPL+  D E DPI+  S CS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDIL-KTPLELTDFEVDPIVSTSFCSPGLLVNEEAEEYGKCKEMRSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]

BLAST of Carg20735-RA vs. TrEMBL
Match: tr|A0A2I4GN19|A0A2I4GN19_9ROSI (uncharacterized protein LOC109009303 isoform X1 OS=Juglans regia OX=51240 GN=LOC109009303 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           +DL QFQK+L+DQA   SNS+ +N+S+SQMR+SWR+GL+SRIYEMD+FD CRCLS DEEE
Sbjct: 538 IDLTQFQKILDDQASWLSNSTLDNVSQSQMRISWRDGLVSRIYEMDDFDCCRCLS-DEEE 597

Query: 61  NADTCSINLSDILK--KTPLKHNDCEADPIICNSSCSSRLLVN-----GEAEEYEKSNEV 120
           +A+ CS    D LK  ++P  + D  +D  +  +S S+  + N     G  +E +  +++
Sbjct: 598 DANGCS---DDQLKSCQSPDANVDVASDQTLTINSGSTEFVDNEPRTEGNGKE-QFPSQI 657

Query: 121 ACCCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
           +C CAESISTDGGGL+AS DSDW LCYKN LF+
Sbjct: 658 SCPCAESISTDGGGLVASRDSDWTLCYKNHLFE 685

[Close]

BLAST of Carg20735-RA vs. TrEMBL
Match: tr|A0A2I4GN17|A0A2I4GN17_9ROSI (uncharacterized protein LOC109009303 isoform X2 OS=Juglans regia OX=51240 GN=LOC109009303 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           +DL QFQK+L+DQA   SNS+ +N+S+SQMR+SWR+GL+SRIYEMD+FD CRCLS DEEE
Sbjct: 459 IDLTQFQKILDDQASWLSNSTLDNVSQSQMRISWRDGLVSRIYEMDDFDCCRCLS-DEEE 518

Query: 61  NADTCSINLSDILK--KTPLKHNDCEADPIICNSSCSSRLLVN-----GEAEEYEKSNEV 120
           +A+ CS    D LK  ++P  + D  +D  +  +S S+  + N     G  +E +  +++
Sbjct: 519 DANGCS---DDQLKSCQSPDANVDVASDQTLTINSGSTEFVDNEPRTEGNGKE-QFPSQI 578

Query: 121 ACCCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
           +C CAESISTDGGGL+AS DSDW LCYKN LF+
Sbjct: 579 SCPCAESISTDGGGLVASRDSDWTLCYKNHLFE 606

[Close]

BLAST of Carg20735-RA vs. TrEMBL
Match: tr|A0A2P6RHV1|A0A2P6RHV1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0084511 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 78/148 (52.70%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 3   LNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEENA 62
           +++ QK+L+DQA  +SNS+ EN+S+SQ+R+SWREGLMSR+++MDE+D CRCLS DEEE+ 
Sbjct: 537 ISRIQKMLDDQAPWHSNSTLENVSQSQLRISWREGLMSRMHDMDEYDCCRCLS-DEEEDI 596

Query: 63  DTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLL-----VNGEAEEYEKSNEVACCC 122
           + CS +L      +P   N+ EAD I+ ++S S+ +L     V G+ +E          C
Sbjct: 597 NGCSNDLPKTSCLSPEITNNVEADQILTDTSWSADILDDEPGVAGKVKEDFPPQS----C 656

Query: 123 AESISTDGGGLMASGDSDWHLCYKNGLF 146
           AESISTDGGGL+ASGDSDW+LCYKN LF
Sbjct: 657 AESISTDGGGLLASGDSDWNLCYKNELF 679

The following BLAST results are available for this feature:

BLAST of Carg20735-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928860.1	1.5e-59	80.95	uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928861.1 unchar...	[more]
XP_023550090.1	1.3e-58	79.59	uncharacterized protein LOC111808388 [Cucurbita pepo subsp. pepo]	[more]
XP_022969790.1	2.2e-58	79.59	uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969792.1 uncharac...	[more]
XP_011649077.1	1.4e-57	76.16	PREDICTED: uncharacterized protein LOC105434579 [Cucumis sativus] >KGN61440.1 hy...	[more]
XP_016902071.1	7.3e-54	74.17	PREDICTED: uncharacterized protein LOC103496888 [Cucumis melo]	[more]

BLAST of Carg20735-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43990.1	9.0e-06	71.43	unknown protein	[more]

BLAST of Carg20735-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20735-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHN8\|A0A0A0LHN8_CUCSA	9.4e-58	76.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122530 PE=4 SV=1	[more]
tr\|A0A1S4E1G9\|A0A1S4E1G9_CUCME	4.8e-54	74.17	uncharacterized protein LOC103496888 OS=Cucumis melo OX=3656 GN=LOC103496888 PE=...	[more]
tr\|A0A2I4GN19\|A0A2I4GN19_9ROSI	2.6e-31	53.59	uncharacterized protein LOC109009303 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4GN17\|A0A2I4GN17_9ROSI	2.6e-31	53.59	uncharacterized protein LOC109009303 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2P6RHV1\|A0A2P6RHV1_ROSCH	1.7e-30	52.70	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0084511 PE=4...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20735	Carg20735	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20735-RA.exon.1	Carg20735-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20735-RA.CDS.1	Carg20735-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20735-RA	Carg20735-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36022	FAMILY NOT NAMED	coord: 2..146