Carg20735 (gene) Silver-seed gourd

Overview
NameCarg20735
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGPI-anchored adhesin-like protein
LocationCucurbita_argyrosperma_scaffold_134 : 7071 .. 7514 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

mRNA sequence

ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

Coding sequence (CDS)

ATGGATCTTAACCAATTTCAAAAGCTTCTTGAAGATCAGGCTTTTAGGAATAGCAATTCTTCGTGTGAGAATTTGTCAAAATCCCAAATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATAGTTGTCGTTGCCTATCAGACGACGAAGAAGAGAATGCTGACACTTGCAGCATTAACTTGTCAGATATCCTTAAGAAGACTCCTCTGAAACATAATGATTGTGAGGCTGATCCTATAATTTGCAACAGTTCTTGTTCTTCTCGATTATTAGTGAATGGGGAAGCCGAAGAATATGAGAAAAGTAATGAAGTAGCATGTTGTTGTGCGGAATCCATTAGCACGGATGGAGGTGGGTTGATGGCATCAGGGGACTCAGATTGGCATTTATGCTACAAAAATGGATTGTTTGATTGCTAA

Protein sequence

MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEENADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAESISTDGGGLMASGDSDWHLCYKNGLFDC
Homology
[Close]
BLAST of Carg20735 vs. NCBI nr
Match: XP_022928860.1 (uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928861.1 uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928862.1 uncharacterized protein LOC111435650 [Cucurbita moschata])

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 119/147 (80.95%), Postives = 119/147 (80.95%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE
Sbjct: 469 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 528

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 529 NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 588

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCYKNGLFDC
Sbjct: 589 XXXXXXXLMASGDSDWHLCYKNGLFDC 615

[Close]
BLAST of Carg20735 vs. NCBI nr
Match: XP_023550090.1 (uncharacterized protein LOC111808388 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 117/147 (79.59%), Postives = 119/147 (80.95%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE
Sbjct: 460 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 519

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSI+LSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 520 NADTCSISLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 579

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCY+NGLFDC
Sbjct: 580 XXXXXXXLMASGDSDWHLCYRNGLFDC 606

[Close]
BLAST of Carg20735 vs. NCBI nr
Match: XP_022969790.1 (uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969792.1 uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969793.1 uncharacterized protein LOC111468888 [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 117/147 (79.59%), Postives = 119/147 (80.95%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSD+EEE
Sbjct: 464 MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDNEEE 523

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEKSNEVACCCAES 120
           NADTCSI+LSDILKKTPLKHNDCEADPIICNSSCSSRLL                     
Sbjct: 524 NADTCSISLSDILKKTPLKHNDCEADPIICNSSCSSRLLXXXXXXXXXXXXXXXXXXXXX 583

Query: 121 ISTDGGGLMASGDSDWHLCYKNGLFDC 148
                  LMASGDSDWHLCYKNGLFDC
Sbjct: 584 XXXXXXXLMASGDSDWHLCYKNGLFDC 610

[Close]
BLAST of Carg20735 vs. NCBI nr
Match: XP_011649077.1 (PREDICTED: uncharacterized protein LOC105434579 [Cucumis sativus] >KGN61440.1 hypothetical protein Csa_2G122530 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDI+ KTPL+H DCE DPI+ NSSCS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDII-KTPLEHTDCEVDPIVSNSSCSPGLLVNEEAEEYGKFKEMQSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]
BLAST of Carg20735 vs. NCBI nr
Match: XP_016902071.1 (PREDICTED: uncharacterized protein LOC103496888 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDIL KTPL+  D E DPI+  S CS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDIL-KTPLELTDFEVDPIVSTSFCSPGLLVNEEAEEYGKCKEMRSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]
BLAST of Carg20735 vs. TAIR10
Match: AT2G43990.1 (unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.0e-06
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 115 CCCAESISTDGGGLMASGDSDWHLCYKN 143
           C  AESISTDGGGL+ S DS+W  CYKN
Sbjct: 605 CSAAESISTDGGGLICSEDSNWMACYKN 632

[Close]
BLAST of Carg20735 vs. TrEMBL
Match: tr|A0A0A0LHN8|A0A0A0LHN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122530 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 9.4e-58
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDI+ KTPL+H DCE DPI+ NSSCS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDII-KTPLEHTDCEVDPIVSNSSCSPGLLVNEEAEEYGKFKEMQSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]
BLAST of Carg20735 vs. TrEMBL
Match: tr|A0A1S4E1G9|A0A1S4E1G9_CUCME (uncharacterized protein LOC103496888 OS=Cucumis melo OX=3656 GN=LOC103496888 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.8e-54
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           MDL+QFQK+LEDQAFRN+NSSCE+L +S+MRVSWREGLMSR+YEMDEFD+CRCLS DEEE
Sbjct: 503 MDLHQFQKILEDQAFRNNNSSCEDLLESKMRVSWREGLMSRLYEMDEFDTCRCLS-DEEE 562

Query: 61  NADTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLLVNGEAEEYEK-----SNEVAC 120
           N D+CSI+LSDIL KTPL+  D E DPI+  S CS  LLVN EAEEY K     S++V C
Sbjct: 563 NVDSCSISLSDIL-KTPLELTDFEVDPIVSTSFCSPGLLVNEEAEEYGKCKEMRSHQVPC 622

Query: 121 CCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
            CAESISTDGGGL+ASGDSDW+LCY+NGLFD
Sbjct: 623 SCAESISTDGGGLIASGDSDWNLCYRNGLFD 651

[Close]
BLAST of Carg20735 vs. TrEMBL
Match: tr|A0A2I4GN19|A0A2I4GN19_9ROSI (uncharacterized protein LOC109009303 isoform X1 OS=Juglans regia OX=51240 GN=LOC109009303 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           +DL QFQK+L+DQA   SNS+ +N+S+SQMR+SWR+GL+SRIYEMD+FD CRCLS DEEE
Sbjct: 538 IDLTQFQKILDDQASWLSNSTLDNVSQSQMRISWRDGLVSRIYEMDDFDCCRCLS-DEEE 597

Query: 61  NADTCSINLSDILK--KTPLKHNDCEADPIICNSSCSSRLLVN-----GEAEEYEKSNEV 120
           +A+ CS    D LK  ++P  + D  +D  +  +S S+  + N     G  +E +  +++
Sbjct: 598 DANGCS---DDQLKSCQSPDANVDVASDQTLTINSGSTEFVDNEPRTEGNGKE-QFPSQI 657

Query: 121 ACCCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
           +C CAESISTDGGGL+AS DSDW LCYKN LF+
Sbjct: 658 SCPCAESISTDGGGLVASRDSDWTLCYKNHLFE 685

[Close]
BLAST of Carg20735 vs. TrEMBL
Match: tr|A0A2I4GN17|A0A2I4GN17_9ROSI (uncharacterized protein LOC109009303 isoform X2 OS=Juglans regia OX=51240 GN=LOC109009303 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 0 

Query: 1   MDLNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEE 60
           +DL QFQK+L+DQA   SNS+ +N+S+SQMR+SWR+GL+SRIYEMD+FD CRCLS DEEE
Sbjct: 459 IDLTQFQKILDDQASWLSNSTLDNVSQSQMRISWRDGLVSRIYEMDDFDCCRCLS-DEEE 518

Query: 61  NADTCSINLSDILK--KTPLKHNDCEADPIICNSSCSSRLLVN-----GEAEEYEKSNEV 120
           +A+ CS    D LK  ++P  + D  +D  +  +S S+  + N     G  +E +  +++
Sbjct: 519 DANGCS---DDQLKSCQSPDANVDVASDQTLTINSGSTEFVDNEPRTEGNGKE-QFPSQI 578

Query: 121 ACCCAESISTDGGGLMASGDSDWHLCYKNGLFD 147
           +C CAESISTDGGGL+AS DSDW LCYKN LF+
Sbjct: 579 SCPCAESISTDGGGLVASRDSDWTLCYKNHLFE 606

[Close]
BLAST of Carg20735 vs. TrEMBL
Match: tr|A0A2P6RHV1|A0A2P6RHV1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0084511 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 78/148 (52.70%), Postives = 107/148 (72.30%), Query Frame = 0 

Query: 3   LNQFQKLLEDQAFRNSNSSCENLSKSQMRVSWREGLMSRIYEMDEFDSCRCLSDDEEENA 62
           +++ QK+L+DQA  +SNS+ EN+S+SQ+R+SWREGLMSR+++MDE+D CRCLS DEEE+ 
Sbjct: 537 ISRIQKMLDDQAPWHSNSTLENVSQSQLRISWREGLMSRMHDMDEYDCCRCLS-DEEEDI 596

Query: 63  DTCSINLSDILKKTPLKHNDCEADPIICNSSCSSRLL-----VNGEAEEYEKSNEVACCC 122
           + CS +L      +P   N+ EAD I+ ++S S+ +L     V G+ +E          C
Sbjct: 597 NGCSNDLPKTSCLSPEITNNVEADQILTDTSWSADILDDEPGVAGKVKEDFPPQS----C 656

Query: 123 AESISTDGGGLMASGDSDWHLCYKNGLF 146
           AESISTDGGGL+ASGDSDW+LCYKN LF
Sbjct: 657 AESISTDGGGLLASGDSDWNLCYKNELF 679

The following BLAST results are available for this feature:
BLAST of Carg20735 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928860.11.5e-5980.95uncharacterized protein LOC111435650 [Cucurbita moschata] >XP_022928861.1 unchar... [more]
XP_023550090.11.3e-5879.59uncharacterized protein LOC111808388 [Cucurbita pepo subsp. pepo][more]
XP_022969790.12.2e-5879.59uncharacterized protein LOC111468888 [Cucurbita maxima] >XP_022969792.1 uncharac... [more]
XP_011649077.11.4e-5776.16PREDICTED: uncharacterized protein LOC105434579 [Cucumis sativus] >KGN61440.1 hy... [more]
XP_016902071.17.3e-5474.17PREDICTED: uncharacterized protein LOC103496888 [Cucumis melo][more]
BLAST of Carg20735 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43990.19.0e-0671.43unknown protein[more]
BLAST of Carg20735 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg20735 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHN8|A0A0A0LHN8_CUCSA9.4e-5876.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122530 PE=4 SV=1[more]
tr|A0A1S4E1G9|A0A1S4E1G9_CUCME4.8e-5474.17uncharacterized protein LOC103496888 OS=Cucumis melo OX=3656 GN=LOC103496888 PE=... [more]
tr|A0A2I4GN19|A0A2I4GN19_9ROSI2.6e-3153.59uncharacterized protein LOC109009303 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2I4GN17|A0A2I4GN17_9ROSI2.6e-3153.59uncharacterized protein LOC109009303 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2P6RHV1|A0A2P6RHV1_ROSCH1.7e-3052.70Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0084511 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20735-RACarg20735-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36022FAMILY NOT NAMEDcoord: 2..146

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20735Bhi12G001185Wax gourdcarwgoB0874
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg20735Watermelon (97103) v2carwmbB0775
Carg20735Cucumber (Gy14) v2carcgybB0734
Carg20735Cucumber (Gy14) v1carcgyB0832
Carg20735Cucurbita maxima (Rimu)carcmaB1033
Carg20735Cucurbita moschata (Rifu)carcmoB1004
Carg20735Cucurbita pepo (Zucchini)carcpeB1040
Carg20735Wild cucumber (PI 183967)carcpiB0772
Carg20735Cucumber (Chinese Long) v2carcuB0755
Carg20735Cucumber (Chinese Long) v3carcucB0775
Carg20735Melon (DHL92) v3.6.1carmedB0747
Carg20735Watermelon (Charleston Gray)carwcgB0717