Carg20565-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAAACTTTGAAAGCCCTCGCAAATCAAACGGATATGGCTGATAAGAGAAAGAACTTGGAAGCGTAATTCGAGGCAATTCGACCTGGCTGGAGCAGTCACCAAACCATATCCATTGCGAAAACGAAGGATTTCCCTCCACTGCAACAGTTGAACCTCTCCCCCTTCGTCAATGGCGCTTTTACAGCCCCCCAAAACCCTTCAAATCACCGCCAATCTCTTCCCCATCTCTAATTTCATCTCCATTCGACCTTCCATTTCAATTCCTTTCTCCTCCTCCTCCAAAACCCTTCAACAAAATGCTCTTCTTTCATCATCCACCACCACTCCCAGAAGGATTCTGTGCAAACCCCCCAAGGGAAAGTACATCCACGACGATTATCTTGTGGTAAACTTGTGTTTTCTTTGATTTTGTTTGTGGGTTTGTTGCCAATTGTTTGCTTCTTTTCGCTATTGGTTCGGTTAATCATTTATGAGGTGCTTGTTTTGGTGTTGGGTTTGTAGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGAAAAGAAATGTGCCGCTTATAATCGATTTCTATGCTACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGGTATGTAGCAATTTGATATGAACTCACATTTATATGGCGTTTCTTTGCTGTACATGTGCCTAAATGCTTCATTTTCAAATATGGCGTTCAAAGAATGTATGTTATTATCCATTGGCTTAAGTTTTTAGTTTGTAGCAACATGGTATTAGATAGGAGTCCTTGTGCTAAAACCTCACTACTAAGTTGCTGTGTTCCATGCTAGTTTTCGAATCCATAAGTGAACCTTTCTGTAACCGCTGAAGCTCACTACAAGTAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGTTTCTCCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTTCCCTCTTCAACCGATTTGGGGTCTCACAATCCACCCCCGTGAGGGCCAAGCGTCCTCGTTGGCACTCGTTCCCCTCTCCAATCGACGTGGGATCTCACACTATCAGTTTAAACCTTTTGGTTTAGTAGTGAGTTAGCTTCTGAATCCTGTTTGATTATTATTTCAAATATATTGTATGTTTAGATAGGCTAAAGGCTATTCCAGTTTAGTTTACATTTTCCCTCTTAGCTGGAACAACTGGGTAGTCAGTTTGGTTGGTAGTACCATGGTGATTTGGGCTATTCACATGGTGGGCACTGTAATATTGTGGTCTGTAACGGTGGTTTAGCTTGGCATCGCACATGATCGTCTCGTAATGGTGGTCTGACTGCAGTAGGAATAATCTGCGTGGCTCGATAAATCGATCCTCTTTGCATTCAATCAGTGTATCCCAAACTAGCAATTCTATCTTTTGTTAGTATATTCACTCCTATTCTGTTGTCCTACAGTCTATATGGGGGGTGGAAGAGACTCCTAGTCTATACGCCCATCGTTTTTTCTTTACTTCTAGTGCTCTATTGTGAGATCTCACATCAGTTGGAGAGGGGAACAAAGCATTCTTTATAAAGGTGTGGAAACCTCTCTCTAGTAGACACATTTTAAAACCGTGAAGCTGACGGTGATACGTAACGGGCCAAAGCTGACAATATCTACTAGTGGTGGGCTTGGGCTGTTACGTCTAGCCTCTATCTTAGGTGGAAAGTTCACTTTAGAATGATACACGTAATTGATTATCAAGCTTGTTTGTTGGAGAATCTAATCATTGTTTGTATTCTGAATGTCACAAAAACTTATGGTTTTAGTGGATGATTGAGCGTTGAGCGATATTTTTGTGCTCGTGATCACGTACAAAGCTTACGTTTCTGGGAATTTGTGTTATTTTTATTGAACAAATAATTTGTGGGAGCATGACTCACCATAAACAAGTCTATAGATTATAGTTCTTATCAACTTGCTTGAACAAAGTTGGTTGCATGGAGTTTTTGCACTTTCGTTTTGTGTATGCGCTGGAGTAAAGTTGTGGTTTGTTCAAGCAAAATGGTAGCTCAAAATGTTTGTTTCATCTATTGCTCGATAACAGCTCAAGCCCACCGCTAGAAAATATTGTCCGTTTTGGCCCGTTATGTATTGCTGTCAGCTCGATTTTAAAACATGGCTATTAGGGAGAGGTTTCCACACCCTTATAAGCATGCTTTGTTCCCCTCTCCAACTGATGTGGGATCTTACAATCCACTCTCCTTGGGGCCAGCATCCTCGCTGGCACACCGCTCGGTATCTGGCTCTGATACCATTTGTAACAGCCCAACTCCACAGCTGGCAAATATTGTCCACTTTGGCCCGTTACGTATCACCGTCAGTCTCATGGTTTTAAAATGCATCTGTTAGGAAGAGGTTTCCACACTCTTATGAGCAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACACATTACAACCACATATCAGTAATATTTTCATGGTCATGTCGGTGATATTTTACAACATTTTTACTATTGATTTTCGTTCATGAAAGTTTTATATTTTCAAATCTCTTCGGCCTCGCACATCTGCCATAACTTCCCATTATTCCCCAGAGTGGGCTAGTTTTCAAATTTCACATTGCCTCATGGATCTGCTATGATTTGTAAATGTGTTGTTTGCTGAACGTGTCGATGCTCGAGACGATTGCTTGAGCTGATGGCATTATCTATTAACTTCGAACATAGATTAACATTTGGAGTTGTTGGATTAGGCTGTAACTAATACGTGCTTATTCAACTTCTATCTTGGAAATCTGGAAGCAATTGCTAACGTGTAGCTCTTACCACAGCTTGCGGTCGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGATGACGAATATGAATTCTCGCGTGATATGCAGGTGAAACACATCAATCCTTTCTCCCTATCCTCTTTGCTTGGTCTCTATACGACAAAGCGTTCTTACACGAAACACTCTCATCTATATGATCTACAAACGCATCGATTATCAGCAAATCGAGTTGCGAAAGATATTGTCTTTGTTCGTTTGAAACGTAAATCTGAGTTGGATGTCTTGTTTCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCGAAAAAAGAAGCTATCCGCACCGAAGGTCTCATTCCGATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGAGCTATGAAGAAAGGAACATCAGGAATACCCTCGTCGACACAGCGGGAAATTTGGAGATCGAACGTGTTCTTTCGAGTCGTGGATGGAGTTTTTTGGCCTCCAGTAAGTCATTTTTTAACCAGAGATTTGAATGGCGGAAAAGCTATTACTTTGCTCCCATCATTTTGTACTGAAAACATAATTTTCTTTTCTTTAGGAAGTGTTATCTTGTAGTAGCAACAGTTCAACTAACAGAATTTTAGTTGGTTTTAAAATTTTAATCATGGGTTGGTTTGGTTCGGTCCGTTTTCGGCTCTTTGGAAATCGATTCGAATGTATCTACTTATACCCTATTGTCAAATATGTGTTCTCGGGATCATGGGATGTCGGGATCTCGAGCTGAAATTTTAAGAGGGAATCTCGCCACGAGAGAGGGCAAGATAGAGTGTAATGAGGTCAGACGTAGCGTTTTCC TGAAAAACTTTGAAAGCCCTCGCAAATCAAACGGATATGGCTGATAAGAGAAAGAACTTGGAAGCGTAATTCGAGGCAATTCGACCTGGCTGGAGCAGTCACCAAACCATATCCATTGCGAAAACGAAGGATTTCCCTCCACTGCAACAGTTGAACCTCTCCCCCTTCGTCAATGGCGCTTTTACAGCCCCCCAAAACCCTTCAAATCACCGCCAATCTCTTCCCCATCTCTAATTTCATCTCCATTCGACCTTCCATTTCAATTCCTTTCTCCTCCTCCTCCAAAACCCTTCAACAAAATGCTCTTCTTTCATCATCCACCACCACTCCCAGAAGGATTCTGTGCAAACCCCCCAAGGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGAAAAGAAATGTGCCGCTTATAATCGATTTCTATGCTACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGCTCTTACCACAGCTTGCGGTCGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGATGACGAATATGAATTCTCGCGTGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCGAAAAAAGAAGCTATCCGCACCGAAGGTCTCATTCCGATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGAGCTATGAAGAAAGGAACATCAGGAATACCCTCGTCGACACAGCGGGAAATTTGGAGATCGAACGTGTTCTTTCGAGTCGTGGATGGAGTTTTTTGGCCTCCAGTAAGTCATTTTTTAACCAGAGATTTGAATGGCGGAAAAGCTATTACTTTGCTCCCATCATTTTGTACTGAAAACATAATTTTCTTTTCTTTAGGAAGTGTTATCTTGTAGTAGCAACAGTTCAACTAACAGAATTTTAGTTGGTTTTAAAATTTTAATCATGGGTTGGTTTGGTTCGGTCCGTTTTCGGCTCTTTGGAAATCGATTCGAATGTATCTACTTATACCCTATTGTCAAATATGTGTTCTCGGGATCATGGGATGTCGGGATCTCGAGCTGAAATTTTAAGAGGGAATCTCGCCACGAGAGAGGGCAAGATAGAGTGTAATGAGGTCAGACGTAGCGTTTTCC ATGGCGCTTTTACAGCCCCCCAAAACCCTTCAAATCACCGCCAATCTCTTCCCCATCTCTAATTTCATCTCCATTCGACCTTCCATTTCAATTCCTTTCTCCTCCTCCTCCAAAACCCTTCAACAAAATGCTCTTCTTTCATCATCCACCACCACTCCCAGAAGGATTCTGTGCAAACCCCCCAAGGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGAAAAGAAATGTGCCGCTTATAATCGATTTCTATGCTACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGCTCTTACCACAGCTTGCGGTCGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGATGACGAATATGAATTCTCGCGTGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCGAAAAAAGAAGCTATCCGCACCGAAGGTCTCATTCCGATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGA MALLQPPKTLQITANLFPISNFISIRPSISIPFSSSSKTLQQNALLSSSTTTPRRILCKPPKGKYIHDDYLVKKMTAEEVQELVKGKRNVPLIIDFYATWCGPCILMAQELEMLLPQLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPKKEAIRTEGLIPIQMMRDIIDKEM
BLAST of Carg20565-RA vs. NCBI nr
Match: XP_022951386.1 (thioredoxin-like protein CITRX, chloroplastic [Cucurbita moschata]) HSP 1 Score: 313.2 bits (801), Expect = 6.0e-82 Identity = 177/182 (97.25%), Postives = 177/182 (97.25%), Query Frame = 0
BLAST of Carg20565-RA vs. NCBI nr
Match: XP_023538068.1 (thioredoxin-like protein CITRX, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80 Identity = 161/182 (88.46%), Postives = 161/182 (88.46%), Query Frame = 0
BLAST of Carg20565-RA vs. NCBI nr
Match: XP_023002069.1 (thioredoxin-like protein CITRX, chloroplastic [Cucurbita maxima]) HSP 1 Score: 302.8 bits (774), Expect = 8.1e-79 Identity = 159/188 (84.57%), Postives = 159/188 (84.57%), Query Frame = 0
BLAST of Carg20565-RA vs. NCBI nr
Match: XP_004146769.1 (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Cucumis sativus] >KGN47767.1 hypothetical protein Csa_6G401380 [Cucumis sativus]) HSP 1 Score: 286.6 bits (732), Expect = 6.0e-74 Identity = 149/187 (79.68%), Postives = 155/187 (82.89%), Query Frame = 0
BLAST of Carg20565-RA vs. NCBI nr
Match: XP_022131323.1 (thioredoxin-like protein CITRX, chloroplastic [Momordica charantia]) HSP 1 Score: 279.6 bits (714), Expect = 7.4e-72 Identity = 147/187 (78.61%), Postives = 152/187 (81.28%), Query Frame = 0
BLAST of Carg20565-RA vs. TAIR10
Match: AT3G06730.1 (Thioredoxin z) HSP 1 Score: 218.0 bits (554), Expect = 4.8e-57 Identity = 109/182 (59.89%), Postives = 136/182 (74.73%), Query Frame = 0
BLAST of Carg20565-RA vs. TAIR10
Match: AT1G43560.1 (thioredoxin Y2) HSP 1 Score: 58.5 bits (140), Expect = 4.8e-09 Identity = 33/110 (30.00%), Postives = 57/110 (51.82%), Query Frame = 0
BLAST of Carg20565-RA vs. TAIR10
Match: AT1G50320.1 (thioredoxin X) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-08 Identity = 28/89 (31.46%), Postives = 45/89 (50.56%), Query Frame = 0
BLAST of Carg20565-RA vs. TAIR10
Match: AT3G15360.1 (thioredoxin M-type 4) HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07 Identity = 24/92 (26.09%), Postives = 50/92 (54.35%), Query Frame = 0
BLAST of Carg20565-RA vs. TAIR10
Match: AT4G03520.1 (Thioredoxin superfamily protein) HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07 Identity = 28/94 (29.79%), Postives = 45/94 (47.87%), Query Frame = 0
BLAST of Carg20565-RA vs. Swiss-Prot
Match: sp|Q9M7X9|CITRX_ARATH (Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CITRX PE=1 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 8.6e-56 Identity = 109/182 (59.89%), Postives = 136/182 (74.73%), Query Frame = 0
BLAST of Carg20565-RA vs. Swiss-Prot
Match: sp|Q9LKW0|CITRX_SOLLC (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CITRX PE=1 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 7.3e-55 Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 0
BLAST of Carg20565-RA vs. Swiss-Prot
Match: sp|Q6JE37|CITX2_NICBE (Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX2 PE=1 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 6.2e-54 Identity = 99/129 (76.74%), Postives = 118/129 (91.47%), Query Frame = 0
BLAST of Carg20565-RA vs. Swiss-Prot
Match: sp|Q6JE38|CITX1_NICBE (Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX1 PE=2 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 2.3e-53 Identity = 98/129 (75.97%), Postives = 117/129 (90.70%), Query Frame = 0
BLAST of Carg20565-RA vs. Swiss-Prot
Match: sp|M1A3D5|CITRX_SOLTU (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum OX=4113 GN=CITRX PE=3 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 8.9e-53 Identity = 98/127 (77.17%), Postives = 116/127 (91.34%), Query Frame = 0
BLAST of Carg20565-RA vs. TrEMBL
Match: tr|A0A0A0KH97|A0A0A0KH97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401380 PE=4 SV=1) HSP 1 Score: 286.6 bits (732), Expect = 4.0e-74 Identity = 149/187 (79.68%), Postives = 155/187 (82.89%), Query Frame = 0
BLAST of Carg20565-RA vs. TrEMBL
Match: tr|A0A1S3BCN5|A0A1S3BCN5_CUCME (thioredoxin-like protein CITRX, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488444 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 1.1e-68 Identity = 141/178 (79.21%), Postives = 145/178 (81.46%), Query Frame = 0
BLAST of Carg20565-RA vs. TrEMBL
Match: tr|A0A0J8B4M5|A0A0J8B4M5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_015280 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 5.8e-57 Identity = 117/183 (63.93%), Postives = 138/183 (75.41%), Query Frame = 0
BLAST of Carg20565-RA vs. TrEMBL
Match: tr|A0A2I4GZV0|A0A2I4GZV0_9ROSI (thioredoxin-like protein CITRX, chloroplastic OS=Juglans regia OX=51240 GN=LOC109012307 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 9.9e-57 Identity = 108/127 (85.04%), Postives = 120/127 (94.49%), Query Frame = 0
BLAST of Carg20565-RA vs. TrEMBL
Match: tr|A0A151RTY8|A0A151RTY8_CAJCA (Thioredoxin OS=Cajanus cajan OX=3821 GN=KK1_032439 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 2.9e-56 Identity = 106/127 (83.46%), Postives = 119/127 (93.70%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|