Carg20559-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20559-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ERI1 exoribonuclease 2
Location	Cucurbita_argyrosperma_scaffold_113 : 277366 .. 282632 (-)
Sequence length	1339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTCACCTTCCAGATCACACAGGTCTCTCTCTTCCCCGTTTTCAGTTTTCCTTTGATTTTCCATTTATTATGAGTATATATGGCAGCTCCTCGGGTATATTTGTTCTTATCATCGGGCTTCTTCAGGAGCGGATTTCAGGGGTAGATCTGATGTACTTGGTGGTCGATCTCAATTACTCTTCTCAAGATCATGATGGCCCTTGAACGCAAAGGTGCTTGTTTGCTCTGGTTTCGTTATTTGAACTGTTTAAGTTTTCTCTCAACTGGTATTTGTTTCTTTTTTTGATCCAATCAATATGAATTTGTGCTGATTTAGTCGCATTCTCTTTCTCCTGCTCGAGGGGGATTCTGCGACTTTGTTTTGTTCATTTCCAAGCGCTACTGAGAACTAGTAACTCTAATTCTGTATAGAGTTGTTGTTGTTATTATTTTGAGCTGAGGGTAGTTCTATTGGGAAATCGAGGAGTCAAGTGAAGAATTGATATGGACATTGCCCTTTTGAGTTGACGTTAGTTCTTGTTGCTTTTTTTCGTTATGGAATTTTGAGATCAGAGGGAGGCGGCTGACCGGAGATATTGATATAATAACACATGTATTTACAGAGTGGGTTTATGAGCACCATACTTCATAGTATCTAGGAGTTTAGATGCCAAGAGCCATTAGTCAGAACTCTTGTACTTCAACGCTTCTTTAACATTTAAAGCATTAAAGTTCGAAGGGTAAGGACCTTGTTAACTGAGAATGATCGTCTGGGTTTTTCTTCTGTGGGTTTTTCTTCTGTTTCTTTTAGGTAATTTGAATCTTAGACAGAAAATTTGAATCGAGGTTTTATTAGCTAGTTTGGAATTGAATCACCGGTGGTTCAACAGGCGTGGAATGTAATTTTAACCAACTGACTAGCACGGCTCTTTATAATTAGGTGATTCTTGCTATGGTGACATTATTAAGAGGACTTATATGAAGCAATTAACAATTATTGAATGTTAAAGATCTTCAATTTTAAAGTTAGCTACTTCAAGAGGCATGATCTCTCTACCTCTTCCGGCCGATCATCCATCTTACCTCTAGCAGCTTTTTGAATTCTTATAGTAGTTGGGAATGAAGGGTACCAGGGCTCTAGTTTAAGATAGATTATACATGTATGAAGTATCATTTGTCACTATCTCTTTTTTTAAAAAATTACATTCCTGTTGTGTGGAGTCTGTTAAGATCTCTTATGGATGTGCCGTTTTTTCTTTTGGAGAAGATAAGTAAAGTGGTTTTTAGGTTTGCAAGAGATAAGTCCTTAATGCCCTGATGGTTTCTCCATGGAGGTAATTGTGAGGGCATTAAAGAGGATTTTTTGAATGGCAATTTCCGAATTTTATGTGTGCGCGCAGGTGGGTTTTAGATGCCTTAATAAATGAAACTTATGTTTGTCTCATCCCAAAGAAAATGCAAAACATGATCAAGGACTTTAGGTTGATTAGCGTTGTTATAAGTTTATATAAGATGATAGCGAAGACCTTGGCTGAGGTTTGAGAATTCTTTCTATTGCAACTCGAAGTCTTCAGGAGATTTTAGTGGGGGAGGAAAATTTTAGACCATTTGCTCATCACTAACGATACCATCAAGGACTTTAGGAGGAAGAACTAATGCAACTCGAAATCTTTTATGTGGCTACAGATCTCTTGATTTATGCCAATTCAAATGCTAACCTCCACAAGTGGTTGGGATTATGGCTGCTTTTTTGTGCTTTTCATGTATAAATAAACTATTAGTTTCCTCCTTTAAAAAGATCACCCCGTCGTTTGTACAGTTTTGAGAGCATTTTTGCAACACCCTTGGTTTGAGGTTTTCCATTTTATATATCTTATTATTTTAAGAAAATGTTTAATATCCTATTAGATAGCTTTGGGTTTCAGTTTATTCTCATTTTCCCTCTCTCTATTAGCATTTCCAAGTTTCTTGTTCCTCCCTTTCTGATTTCCTTCCCATGACATCCTTTTTCTATTCCTGTATTTTCTTCCCCGTCCTCCTGATTTCCTCACCTTGTTTTCTTGTCAGCCATCCTTTTCAAATTTTCCCTTGTTGTGCTGTGGATGAGCAACAATGATCGAGTATGCAACTTCCGATTTTGTTGATGAGAACCGGTGTTATCTGCCCCGTAGAGATTTTCTTAGATAAATGTCAGAATTTTCATTACTGAGGAAACAATACCAGAGGTGGAAAGCAATTTTTAGAGTTCTCTACGATATTGCTATCCTGTAAGCCTCCCTTGACTTTATGTTGCTGAAATGACATCTTTTGAATCGGTATGAATCTGCCAGTCGCAAGAAATGGTAATAGTTTTACCTCTTTTATTCCTGGTTGCAATCCGGTAATTTCTCTTCCAATTGAAACTTTGACCTTTTATGCGACATTAAGTGGTTAAATAATAACTAAAACCTAAAAACTTAAATTGATAGATTACAACGAATTTAGTATTTTTATCAATATTTTGATAGTTTCTCTCACTTGTGAGATTGAAAATTTATGAAATGCCTAACAAGTGAAACCAATATTAATTTGGAAAGAAATGGCAATACTTTGATATTATATCAAATATCAAATTACCAAATACCACTGGACAAAAAAGATTTAGTTGATCAGTTATAGTAAATTAAATATTTTTTAGTGCGATATCTATCTTTGTTTTCCTCCAGGAACACCTATGGTCTTCTAAATGTTTAACTTTATATCTTTATTGGATATTGTTTTAGCCATATTGACTAGAGAAACCTTCTATGTTCTCTATACAATATTTAATTCAAAATCATTTTAATTTCTTTTGCTTCTTTGTTTGCAGAAAGTATGCAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTCTGCAACATAGTGGAAATTCTGTTGATGGTTTCCAAGAACGTACAGATGAAATCAGTTGTTATAGCAGCAATGATATTCCTGAAACAAACCACCCATTGGTTAACAATTTTATTGAACGTCCAAATGAATTTCACAACAAACCTGCTTATCAGCATAATTCTGGATCATGGCCTGCCTTTCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAGTGCTTCCGAATGCCAGTTCTACTCTTTGCCAGTGGAGAATCGCTTCCATTATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATTTTCGGCTGCAAGAGTTTCAATATTTTGTGGTTATAGACTTTGAAGCAACATGTGACAAGGATAAAAATCCCCATCCTCAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTCGAAGCTTGCTTTCAAACGTATGTGCGCCCAACTTGCAATCAGCTCTTAAGCGACTTCTGCAGGGATCTAACTGGCATTCAGCAAATTCAGGTTTGTTTGAAGCTTAGCTTGTTTTTCTTCAAAGAAAATAATTACGCTTGGAGGTTGCATCTTGCTGGCATGGAACAAACTTGGTGGTGTGATTGATTATCGATTTTACTTAGTGTCCTACATTTAGGGTGTTTTTTATATTTAATTTTAAATCTTAATTTAAAAAAAATATATGATTCTTATCTTTTCTGATTCACTTATCCAATCTCCCTCCATAGTCTTAGTTTGGCACATAATTTTCTTTTAACGATTTCGATAATTTTCTGATGTTGTAATTTAGGTGCCTTTGAAGTTTGGTTCTAACGTGTGGCCTACCACTACCTATAATAGGGGTCTTCATGGGTTGGTTTGACTAAGATATAGACTTGAATTGAAACCTAGCCGAACCCTTGAAAGCCTTATAGTCTAAGGGAAGTATCTTGTGTTCCATGTAGCCTTTGGAGTCTTATATTCTCATTCTATTTCCTTTATAATTCTATTTGGTCATTGTTTATCTGTTAGGACCTTCTAATGTTTATCTTATCTCATTGCTGTCTATAGGTGGACAGAGGTGTTACTCTCAATGAAGCTCTCCTCAGGCATGACAAATGGCTTGAAAAGAAGGGGATAAAGAACGCAAATTTTGCGGTGGTAACTTGGTCAAACTGGGATTGCCGAGTCATGTTAGAGTCGGAATGCCGTTTCAAGAAGATTCGAAAGCCTCAATATTTCAACCGGTAAATGATCCTCACAAAAGCTGTTTCTATGCATAGTACAAATAATAGTTTAAATCATATCGCGATAACCTAAACAATCATGAACTCGGAAGTGCACTAGAAGAACAAAATCATTTTAATGCTATTGGTTGTGCTGTTAGTAATCAATCAAGGTAGGAGCATCCTCACATTTGGAGCTTAAAATCTCGCAGGAAAAACAAACCAAACAGTTTATCATTGATACCTTCATCCTTCAGCCATTTGCCTAGTCTAACTTTTACAGCTTTAGCTGACGGTGCAACTTTTCATCTTCTCTAATTTGCCCCCAATGACTATCAAATGTTCAGCATTTTTGTTTATCAATTACTATTGTTTATAGCTTCAGTGGGAAAACGTTCCAACATTTAGTAGGAAAGTGCTCTGTTCTTAGCTTTAAACGGACTGGCATATTTCATTTGCCTTTAGAATAGCATTCCCTTTGAATTGTTCATTGACAGTCAGTTACATCTTCAAGTAAAAGAACGAACATATATCGATAAGAAAAGGCGTCGTCTGCATTCTAAAATACTTGGTGGCACCCATAACTTTTCACCAGTAGATAAACACGGTTATAATTGCTAAAGAATTGTATATTTATATTTAGTACTGCAATTAGTTCTTACTTCTCTCTTCTGATTTGACTGATGACAGATGGATCAACTTAAAAATTCCATTTTGTGAGGTTTTTGGTGGACAACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGATTATCTTGGCAAGGTCGTGCTCACTGTGGTCTTGACGATGCCAAGAACACTGCACGTTTACTCGCCCTTCTTATGCATAGAGGCTTCAGATTCTCCATCACCAATTCATTGATGTGGCAGACTTCTGACTGCCCATTTCAATGGAAACAACAACCCCCAGGAGGCGTTACATTCCCGCCGCAACCGCCATTGAAATCAAAGCCTATGCACATTCCCATCTTCCATTACCACCCCTACTGTATCTGTGGGGTAAGGAGCAGCCGAGGTATGGTTCGGAAGCCAGGACCAAAGCAAGGGAGTTTTTTCTTTGGCTGTGGGAATTGGACTGCCACCAAGGGGGCACGATGCCATTACTTCCAATGGGCCTCTCCCTGA

mRNA sequence

CGGCTCACCTTCCAGATCACACAGGAGCGGATTTCAGGGGTAGATCTGATGTACTTGGTGGTCGATCTCAATTACTCTTCTCAAGATCATGATGGCCCTTGAACGCAAAGAAAGTATGCAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTCTGCAACATAGTGGAAATTCTGTTGATGGTTTCCAAGAACGTACAGATGAAATCAGTTGTTATAGCAGCAATGATATTCCTGAAACAAACCACCCATTGGTTAACAATTTTATTGAACGTCCAAATGAATTTCACAACAAACCTGCTTATCAGCATAATTCTGGATCATGGCCTGCCTTTCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAGTGCTTCCGAATGCCAGTTCTACTCTTTGCCAGTGGAGAATCGCTTCCATTATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATTTTCGGCTGCAAGAGTTTCAATATTTTGTGGTTATAGACTTTGAAGCAACATGTGACAAGGATAAAAATCCCCATCCTCAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTCGAAGCTTGCTTTCAAACGTATGTGCGCCCAACTTGCAATCAGCTCTTAAGCGACTTCTGCAGGGATCTAACTGGCATTCAGCAAATTCAGGTGGACAGAGGTGTTACTCTCAATGAAGCTCTCCTCAGGCATGACAAATGGCTTGAAAAGAAGGGGATAAAGAACGCAAATTTTGCGGTGGTAACTTGGTCAAACTGGGATTGCCGAGTCATGTTAGAGTCGGAATGCCGTTTCAAGAAGATTCGAAAGCCTCAATATTTCAACCGATGGATCAACTTAAAAATTCCATTTTGTGAGGTTTTTGGTGGACAACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGATTATCTTGGCAAGGTCGTGCTCACTGTGGTCTTGACGATGCCAAGAACACTGCACGTTTACTCGCCCTTCTTATGCATAGAGGCTTCAGATTCTCCATCACCAATTCATTGATGTGGCAGACTTCTGACTGCCCATTTCAATGGAAACAACAACCCCCAGGAGGCGTTACATTCCCGCCGCAACCGCCATTGAAATCAAAGCCTATGCACATTCCCATCTTCCATTACCACCCCTACTGTATCTGTGGGGTAAGGAGCAGCCGAGGTATGGTTCGGAAGCCAGGACCAAAGCAAGGGAGTTTTTTCTTTGGCTGTGGGAATTGGACTGCCACCAAGGGGGCACGATGCCATTACTTCCAATGGGCCTCTCCCTGA

Coding sequence (CDS)

ATGATGGCCCTTGAACGCAAAGAAAGTATGCAGAGGAACTGTGAGGCCTCTATAAAATGCCTCCAGAATAATGGAATGCCATTCAGTCTGCAACATAGTGGAAATTCTGTTGATGGTTTCCAAGAACGTACAGATGAAATCAGTTGTTATAGCAGCAATGATATTCCTGAAACAAACCACCCATTGGTTAACAATTTTATTGAACGTCCAAATGAATTTCACAACAAACCTGCTTATCAGCATAATTCTGGATCATGGCCTGCCTTTCATTTTGACTCTCAAAAGGTGCAGCAGTGCCAGATGAGTGCTTCCGAATGCCAGTTCTACTCTTTGCCAGTGGAGAATCGCTTCCATTATGTTCCTTTCAAAATGTTTGAACAGAATTACCATTGTGATTTTCGGCTGCAAGAGTTTCAATATTTTGTGGTTATAGACTTTGAAGCAACATGTGACAAGGATAAAAATCCCCATCCTCAGGAGATAATTGAGTTCCCATCTGTCATTGTAAGTAGTGTGACTGGCCAACTCGAAGCTTGCTTTCAAACGTATGTGCGCCCAACTTGCAATCAGCTCTTAAGCGACTTCTGCAGGGATCTAACTGGCATTCAGCAAATTCAGGTGGACAGAGGTGTTACTCTCAATGAAGCTCTCCTCAGGCATGACAAATGGCTTGAAAAGAAGGGGATAAAGAACGCAAATTTTGCGGTGGTAACTTGGTCAAACTGGGATTGCCGAGTCATGTTAGAGTCGGAATGCCGTTTCAAGAAGATTCGAAAGCCTCAATATTTCAACCGATGGATCAACTTAAAAATTCCATTTTGTGAGGTTTTTGGTGGACAACGATGCAATCTAAAGGAAGCTGTTGAGATGGCAGGATTATCTTGGCAAGGTCGTGCTCACTGTGGTCTTGACGATGCCAAGAACACTGCACGTTTACTCGCCCTTCTTATGCATAGAGGCTTCAGATTCTCCATCACCAATTCATTGATGTGGCAGACTTCTGACTGCCCATTTCAATGGAAACAACAACCCCCAGGAGGCGTTACATTCCCGCCGCAACCGCCATTGAAATCAAAGCCTATGCACATTCCCATCTTCCATTACCACCCCTACTGTATCTGTGGGGTAAGGAGCAGCCGAGGTATGGTTCGGAAGCCAGGACCAAAGCAAGGGAGTTTTTTCTTTGGCTGTGGGAATTGGACTGCCACCAAGGGGGCACGATGCCATTACTTCCAATGGGCCTCTCCCTGA

Protein sequence

MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHPLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYVPFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSNWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHCGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPMHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP

Homology

[Close]

BLAST of Carg20559-RA vs. NCBI nr
Match: XP_023537711.1 (3'-5' exoribonuclease 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 897.9 bits (2319), Expect = 1.3e-257
Identity = 415/416 (99.76%), Postives = 416/416 (100.00%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLP+ENRFHYV
Sbjct: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPLENRFHYV 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS
Sbjct: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP
Sbjct: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP
Sbjct: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 416

[Close]

BLAST of Carg20559-RA vs. NCBI nr
Match: XP_022951243.1 (3'-5' exoribonuclease 1-like isoform X2 [Cucurbita moschata] >XP_022951244.1 3'-5' exoribonuclease 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 897.1 bits (2317), Expect = 2.2e-257
Identity = 415/416 (99.76%), Postives = 415/416 (99.76%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYS NDIPETNH
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSRNDIPETNH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV
Sbjct: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS
Sbjct: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP
Sbjct: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP
Sbjct: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 416

[Close]

BLAST of Carg20559-RA vs. NCBI nr
Match: XP_023002623.1 (uncharacterized protein LOC111496425 isoform X2 [Cucurbita maxima])

HSP 1 Score: 896.3 bits (2315), Expect = 3.8e-257
Identity = 414/416 (99.52%), Postives = 415/416 (99.76%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MM LERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH
Sbjct: 1   MMTLERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV
Sbjct: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS
Sbjct: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLALLMHRGFRFSITNSL+WQTSDCPFQWKQQPPGGVTFPPQPPLKSKP
Sbjct: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLLWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP
Sbjct: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 416

[Close]

BLAST of Carg20559-RA vs. NCBI nr
Match: XP_023002622.1 (uncharacterized protein LOC111496425 isoform X1 [Cucurbita maxima])

HSP 1 Score: 887.5 bits (2292), Expect = 1.8e-254
Identity = 409/415 (98.55%), Postives = 412/415 (99.28%), Query Frame = 0


Query: 2   MALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP 61
           + + R ESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP
Sbjct: 3   LPVARNESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP 62

Query: 62  LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYVP 121
           LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYVP
Sbjct: 63  LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYVP 122

Query: 122 FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ 181
           FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ
Sbjct: 123 FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ 182

Query: 182 TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN 241
           TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN
Sbjct: 183 TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN 242

Query: 242 WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC 301
           WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC
Sbjct: 243 WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC 302

Query: 302 GLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM 361
           GLDDAKNTARLLALLMHRGFRFSITNSL+WQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM
Sbjct: 303 GLDDAKNTARLLALLMHRGFRFSITNSLLWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM 362

Query: 362 HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP
Sbjct: 363 HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417

[Close]

BLAST of Carg20559-RA vs. NCBI nr
Match: XP_023537710.1 (3'-5' exoribonuclease 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 887.5 bits (2292), Expect = 1.8e-254
Identity = 409/415 (98.55%), Postives = 412/415 (99.28%), Query Frame = 0


Query: 2   MALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP 61
           + + R ESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP
Sbjct: 3   LPVARNESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNHP 62

Query: 62  LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYVP 121
           LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLP+ENRFHYVP
Sbjct: 63  LVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPLENRFHYVP 122

Query: 122 FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ 181
           FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ
Sbjct: 123 FKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQ 182

Query: 182 TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN 241
           TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN
Sbjct: 183 TYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWSN 242

Query: 242 WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC 301
           WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC
Sbjct: 243 WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC 302

Query: 302 GLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM 361
           GLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM
Sbjct: 303 GLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKPM 362

Query: 362 HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP
Sbjct: 363 HIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417

[Close]

BLAST of Carg20559-RA vs. TAIR10
Match: AT3G15140.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-20
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0


Query: 136 QEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPT--CNQLLS 195
           QEF +F+VID E            EI+EFP +IV + T ++   F  +VRPT    Q ++
Sbjct: 124 QEFNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAIN 183

Query: 196 DFCRDL---TGIQQIQVDRGVTLNEALLRHDKWLEKK---------GIKNANFAVVTWSN 255
            +        G+ ++  D  +   + +   + WL +          G+ +A F  VT  N
Sbjct: 184 KYIEGKYGELGVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAF--VTCGN 243

Query: 256 WDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAHC 315
           WD +  +  +C    I  P YF  WINLK  +   +G +   +   +   G+   G  H 
Sbjct: 244 WDIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHL 303

Query: 316 GLDDAKNTARLLALLMHRGFRFSIT 327
           G+DD KN  R++  ++  G    +T
Sbjct: 304 GIDDTKNITRVVQRMLSEGAVLKLT 317

[Close]

BLAST of Carg20559-RA vs. Swiss-Prot
Match: sp|A8K979|ERI2_HUMAN (ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=2 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 5.2e-40
Identity = 89/211 (42.18%), Postives = 127/211 (60.19%), Query Frame = 0


Query: 136 QEFQYFVVIDFEATCDKD-KNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 195
           Q F Y +VIDFE+TC  D K+ H QEIIEFP+V++++ TGQ+++ FQ YV+P  + +LS+
Sbjct: 32  QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91

Query: 196 FCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK-KGIKNANFAV---------------VT 255
           FC +LTGI+Q QVD GV L   L +  KW+ K +  KN  FA                VT
Sbjct: 92  FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151

Query: 256 WSNWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGR 315
           WS+WD  V LE EC+ K++ KP + N WI+L+  +   +  +   L  A++  G+ + GR
Sbjct: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGR 211

Query: 316 AHCGLDDAKNTARLLALLMHRGFRFSITNSL 330
            H GLDD++NTA L   ++  G    IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242

[Close]

BLAST of Carg20559-RA vs. Swiss-Prot
Match: sp|Q5HZL1|ERI2_XENLA (ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-39
Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = 0


Query: 136 QEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDF 195
           Q F+Y ++IDFE+TC KD     QEIIEFP+V+++   G++E+ F TYV+P  + +LSDF
Sbjct: 33  QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDF 92

Query: 196 CRDLTGIQQIQVDRGVTLNEALLRHDKWLEK----KGI------------KNANFAVVTW 255
           C +LTGI Q QVD GV L   L + + W++K    KGI            ++   A VTW
Sbjct: 93  CTELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTW 152

Query: 256 SNWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRA 315
           S+WD  V L  ECR K+++KP   N WI+L+  +   +  +   L  A++  G+ + GR 
Sbjct: 153 SDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGRE 212

Query: 316 HCGLDDAKNTARLLALLMHRGFRFSITNSL 330
           H GLDD++NTA+L + ++  G    IT SL
Sbjct: 213 HSGLDDSRNTAKLASRMICDGCVMKITKSL 242

[Close]

BLAST of Carg20559-RA vs. Swiss-Prot
Match: sp|Q5BKS4|ERI2_MOUSE (ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.3e-38
Identity = 83/211 (39.34%), Postives = 124/211 (58.77%), Query Frame = 0


Query: 136 QEFQYFVVIDFEATCDKDKNPHPQ-EIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSD 195
           Q + Y +V+DFE+TC  D   H   EIIEFP+V++++ TG++E+ F  YV+P  + +LS+
Sbjct: 32  QLYAYLIVVDFESTCWNDGKHHSSPEIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSE 91

Query: 196 FCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK-KGIKNANFAV---------------VT 255
           FC +LTGI+Q+QVD GV L   L +  KW+ K +  +  +FA                VT
Sbjct: 92  FCTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVT 151

Query: 256 WSNWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGR 315
           WS+WD  V LE ECR K++ KP + N WI+L+  +   +  +   L  A++  G+ + GR
Sbjct: 152 WSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGR 211

Query: 316 AHCGLDDAKNTARLLALLMHRGFRFSITNSL 330
            H GLDD++NTA L   ++  G    IT SL
Sbjct: 212 EHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242

[Close]

BLAST of Carg20559-RA vs. Swiss-Prot
Match: sp|A6QLH5|ERI3_BOVIN (ERI1 exoribonuclease 3 OS=Bos taurus OX=9913 GN=ERI3 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-35
Identity = 79/198 (39.90%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 133 FRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLL 192
           F  Q + YF+V+DFEATCDK +  HPQEIIEFP + ++  T ++E+ F  YV+P  +  L
Sbjct: 138 FPPQRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQL 197

Query: 193 SDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGI--KNANFAVVTWSNWDCRVMLES 252
           + FC +LTGI Q  VD   +L + L R D+W+ K+G+   N     VT  +WD +VML  
Sbjct: 198 TPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPG 257

Query: 253 ECRFKKIRKPQYFNRWINLKIPFCEVFG-GQRCNLKEAVEMAGLSWQGRAHCGLDDAKNT 312
           +C++  +    YF +WINLK  +    G   +  L +  +   L   GR H G+DD KN 
Sbjct: 258 QCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNI 317

Query: 313 ARLLALLMHRGFRFSITN 328
           A ++  L +RGF F  T+
Sbjct: 318 ANIMKTLAYRGFIFKQTS 334

[Close]

BLAST of Carg20559-RA vs. Swiss-Prot
Match: sp|O43414|ERI3_HUMAN (ERI1 exoribonuclease 3 OS=Homo sapiens OX=9606 GN=ERI3 PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-35
Identity = 79/198 (39.90%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 133 FRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLL 192
           F  Q + YF+V+DFEATCDK +  HPQEIIEFP + ++  T ++E+ F  YV+P  +  L
Sbjct: 138 FPPQRYHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQL 197

Query: 193 SDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGI--KNANFAVVTWSNWDCRVMLES 252
           + FC +LTGI Q  VD   +L + L R D+W+ K+G+   N     VT  +WD +VML  
Sbjct: 198 TPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPG 257

Query: 253 ECRFKKIRKPQYFNRWINLKIPFCEVFG-GQRCNLKEAVEMAGLSWQGRAHCGLDDAKNT 312
           +C++  +    YF +WINLK  +    G   +  L +  +   L   GR H G+DD KN 
Sbjct: 258 QCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNI 317

Query: 313 ARLLALLMHRGFRFSITN 328
           A ++  L +RGF F  T+
Sbjct: 318 ANIMKTLAYRGFIFKQTS 334

[Close]

BLAST of Carg20559-RA vs. TrEMBL
Match: tr|A0A1S3BCJ6|A0A1S3BCJ6_CUCME (3'-5' exoribonuclease 1-like OS=Cucumis melo OX=3656 GN=LOC103488427 PE=4 SV=1)

HSP 1 Score: 811.2 bits (2094), Expect = 1.1e-231
Identity = 376/416 (90.38%), Postives = 391/416 (93.99%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNS DGFQE TDEISC+++NDIPETNH
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PLVNNFIERPNEFHNKPAYQHNS SWPAFHF+SQKVQQCQMSAS+CQFYSLPVENRF Y 
Sbjct: 61  PLVNNFIERPNEFHNKPAYQHNSSSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYF 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PFKMFE NY CD RLQEFQYFVVIDFEATCDKD+NPHPQEIIEFPSVIV+SVTG LEACF
Sbjct: 121 PFKMFEHNY-CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQ LSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKN NFAVVTWS
Sbjct: 181 QTYVRPTCNQHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKP YFNRWINLK+PF EVFGG RCNLKEAVEMAGL W+GRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLAL+MH+GFRFSITNSLMWQT+DCP QWKQ P   VTFPPQPP+K KP
Sbjct: 301 CGLDDAKNTARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPE-TVTFPPQPPMKPKP 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIPI  Y PYC CGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYF+WASP
Sbjct: 361 MHIPIVQYFPYCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWASP 414

[Close]

BLAST of Carg20559-RA vs. TrEMBL
Match: tr|A0A0A0KDW9|A0A0A0KDW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399780 PE=4 SV=1)

HSP 1 Score: 808.9 bits (2088), Expect = 5.3e-231
Identity = 375/416 (90.14%), Postives = 391/416 (93.99%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNS DGFQE TDEISC+++NDIPETNH
Sbjct: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSADGFQELTDEISCHANNDIPETNH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PLVNNFIERPNEFHNKPAYQHNS SWPAFHF+SQKVQQCQMSAS+CQFYSLPVENRF Y 
Sbjct: 61  PLVNNFIERPNEFHNKPAYQHNSRSWPAFHFESQKVQQCQMSASDCQFYSLPVENRFQYF 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PFKMFE NY CD RLQEFQYFVVIDFEATCDKD+NPHPQEIIEFPSVIV+SVTG LEACF
Sbjct: 121 PFKMFEPNY-CDVRLQEFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVNSVTGHLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQ LSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEK+GIKN NFAVVTWS
Sbjct: 181 QTYVRPTCNQHLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKRGIKNTNFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKP YFNRWINLK+PF EVFGG RCNLKEAVEMAGL W+GRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPPYFNRWINLKVPFREVFGGARCNLKEAVEMAGLDWEGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLAL+MH+GFRFSITNSLMWQT+DCP QWKQ P   VTFPPQPP+K KP
Sbjct: 301 CGLDDAKNTARLLALIMHKGFRFSITNSLMWQTTDCPLQWKQSPE-TVTFPPQPPMKPKP 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIPI  Y PYC CGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYF+WA+P
Sbjct: 361 MHIPIVQYFPYCFCGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFEWATP 414

[Close]

BLAST of Carg20559-RA vs. TrEMBL
Match: tr|A0A2P6SAC4|A0A2P6SAC4_ROSCH (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0326491 PE=4 SV=1)

HSP 1 Score: 672.2 bits (1733), Expect = 7.7e-190
Identity = 313/416 (75.24%), Postives = 354/416 (85.10%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALE+ E+MQRNCEAS+KCL + G P++LQ +GN ++GF E  DE+S +   D  E++ 
Sbjct: 1   MMALEQTENMQRNCEASLKCLHSKGFPYNLQCNGNPIEGFPEHKDELSNHPGGDNSESDR 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
           PL + F+E P E HNKP Y H+ G W AFHFDSQK+QQCQM+A E QFY LPV+NRFHYV
Sbjct: 61  PLGSEFLEPPTERHNKPTYHHDFGYWSAFHFDSQKLQQCQMNAFESQFYQLPVDNRFHYV 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PF +F Q+Y  +F+ Q+FQYFVVIDFEATCDKD+NPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 121 PFNVFAQSYPNEFQFQDFQYFVVIDFEATCDKDRNPHPQEIIEFPSVIVSSVTGQLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCN LLSDFC+DLTGIQQIQVDRGVTL+EALLRHDKWLEKKGIKN NFAVVTWS
Sbjct: 181 QTYVRPTCNHLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKP YFNRWINLK+PF EVFGG RCNLKEAV+MAGL+WQGRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPPYFNRWINLKVPFREVFGGMRCNLKEAVQMAGLAWQGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLL++LM RGF+F+ITNSL+WQT+D P   KQ P      PP   LK K 
Sbjct: 301 CGLDDAKNTARLLSVLMRRGFKFAITNSLLWQTADRPLTLKQSPEH--LSPPHHTLKLKD 360

Query: 361 MHIPIFHY-HPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWAS 416
           M IP+  Y HP+C CGV+SSRGMVRKPGPKQGS FFGCGNWTAT+GARCHYF+WAS
Sbjct: 361 MSIPVCQYHHPFCFCGVKSSRGMVRKPGPKQGSVFFGCGNWTATRGARCHYFEWAS 414

[Close]

BLAST of Carg20559-RA vs. TrEMBL
Match: tr|A0A251L522|A0A251L522_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G156500 PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 1.7e-189
Identity = 312/416 (75.00%), Postives = 348/416 (83.65%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           MMALE KE++QR+CEAS+KCLQ NG P+     GNS+DGF E  +E S +S  D+ E  H
Sbjct: 1   MMALENKETIQRSCEASLKCLQTNGFPY-----GNSIDGFPELKEETSAHSGGDVVEPVH 60

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
            + + F+E P+EFH+KP Y H+ GSW  F+ DSQKVQQCQM+  E QFY  P+E RF Y 
Sbjct: 61  SISSEFLELPSEFHSKPTYHHDFGSWSTFYPDSQKVQQCQMNCFEGQFYPFPMETRFQYA 120

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PF M+ Q    +F  Q+FQYFVVIDFEATCDK+KNPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 121 PFNMYSQGCPYEFHFQDFQYFVVIDFEATCDKEKNPHPQEIIEFPSVIVSSVTGQLEACF 180

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQLLSDFC+DLTGIQQIQVDRGVTL+EALLRHDKWLEKKGIKN+NFAVVTWS
Sbjct: 181 QTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNSNFAVVTWS 240

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKP YFNRWINLK+PF EVFGG RCNLKEAVEMAGL+WQGRAH
Sbjct: 241 NWDCRVMLESECRFKKIRKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAH 300

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLALLM RG RFSITNSLMWQT+D    WK   P  ++F P  P K K 
Sbjct: 301 CGLDDAKNTARLLALLMRRGIRFSITNSLMWQTTDGSLPWKPS-PDHLSFSPHQPYKLKE 360

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
           MHIP+F YHP+C CGV+SS+GMVRKPGPKQGS FFGCGNWTAT+GA CHYF+WASP
Sbjct: 361 MHIPVFQYHPFCYCGVKSSKGMVRKPGPKQGSLFFGCGNWTATRGALCHYFEWASP 410

[Close]

BLAST of Carg20559-RA vs. TrEMBL
Match: tr|D7TX74|D7TX74_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0084g00580 PE=4 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 1.9e-188
Identity = 311/416 (74.76%), Postives = 347/416 (83.41%), Query Frame = 0


Query: 1   MMALERKESMQRNCEASIKCLQNNGMPFSLQHSGNSVDGFQERTDEISCYSSNDIPETNH 60
           M+ALE KE+MQRNCEAS+KCLQ+   P+ L   GN ++GF E  DE S ++  DI E   
Sbjct: 106 MIALEHKETMQRNCEASVKCLQSKRFPYKLPCKGNPIEGFSELKDETSVHAGGDIVERER 165

Query: 61  PLVNNFIERPNEFHNKPAYQHNSGSWPAFHFDSQKVQQCQMSASECQFYSLPVENRFHYV 120
            L +  ++  NEFHNKP YQ++ GSWP F+ DSQKVQQCQ++A E Q+Y  PV+N+F Y 
Sbjct: 166 SLSSESLKPSNEFHNKPIYQNDFGSWPTFYPDSQKVQQCQLNAFESQYYPFPVDNQFLYA 225

Query: 121 PFKMFEQNYHCDFRLQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVTGQLEACF 180
           PF  F Q Y  +F LQ+FQYFVVIDFEATCDK KNPHPQEIIEFPSVIVSSVTGQLEACF
Sbjct: 226 PFHAFSQGYPYEFMLQDFQYFVVIDFEATCDKGKNPHPQEIIEFPSVIVSSVTGQLEACF 285

Query: 181 QTYVRPTCNQLLSDFCRDLTGIQQIQVDRGVTLNEALLRHDKWLEKKGIKNANFAVVTWS 240
           QTYVRPTCNQ+LSDFC+DLTGIQQIQVDRGVTL+EALLRHDKWLEKKGIKN NFAVVTWS
Sbjct: 286 QTYVRPTCNQILSDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNTNFAVVTWS 345

Query: 241 NWDCRVMLESECRFKKIRKPQYFNRWINLKIPFCEVFGGQRCNLKEAVEMAGLSWQGRAH 300
           NWDCRVMLESECRFKKIRKP YFNRWINLK+PF EVFGG  CNLKEAVEMAGL+WQGRAH
Sbjct: 346 NWDCRVMLESECRFKKIRKPPYFNRWINLKVPFREVFGGVWCNLKEAVEMAGLAWQGRAH 405

Query: 301 CGLDDAKNTARLLALLMHRGFRFSITNSLMWQTSDCPFQWKQQPPGGVTFPPQPPLKSKP 360
           CGLDDAKNTARLLA LMHRGF+FSITNSLMWQ +D P  WKQ P    +FP   P K + 
Sbjct: 406 CGLDDAKNTARLLAFLMHRGFKFSITNSLMWQATDHPESWKQSPELS-SFPEYHPQKLRE 465

Query: 361 MHIPIFHYHPYCICGVRSSRGMVRKPGPKQGSFFFGCGNWTATKGARCHYFQWASP 417
             IP+FHYHPYC CGV+SS+GMVRKPGPKQGSFFFGCGNWTA +GARCHYF+WASP
Sbjct: 466 PTIPLFHYHPYCYCGVKSSKGMVRKPGPKQGSFFFGCGNWTAARGARCHYFEWASP 520

The following BLAST results are available for this feature:

BLAST of Carg20559-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537711.1	1.3e-257	99.76	3'-5' exoribonuclease 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022951243.1	2.2e-257	99.76	3'-5' exoribonuclease 1-like isoform X2 [Cucurbita moschata] >XP_022951244.1 3'-...	[more]
XP_023002623.1	3.8e-257	99.52	uncharacterized protein LOC111496425 isoform X2 [Cucurbita maxima]	[more]
XP_023002622.1	1.8e-254	98.55	uncharacterized protein LOC111496425 isoform X1 [Cucurbita maxima]	[more]
XP_023537710.1	1.8e-254	98.55	3'-5' exoribonuclease 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg20559-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15140.1	3.7e-20	27.32	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Carg20559-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8K979\|ERI2_HUMAN	5.2e-40	42.18	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=2 SV=2	[more]
sp\|Q5HZL1\|ERI2_XENLA	1.5e-39	40.95	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1	[more]
sp\|Q5BKS4\|ERI2_MOUSE	8.3e-38	39.34	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1	[more]
sp\|A6QLH5\|ERI3_BOVIN	2.3e-35	39.90	ERI1 exoribonuclease 3 OS=Bos taurus OX=9913 GN=ERI3 PE=2 SV=1	[more]
sp\|O43414\|ERI3_HUMAN	2.3e-35	39.90	ERI1 exoribonuclease 3 OS=Homo sapiens OX=9606 GN=ERI3 PE=1 SV=2	[more]

BLAST of Carg20559-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCJ6\|A0A1S3BCJ6_CUCME	1.1e-231	90.38	3'-5' exoribonuclease 1-like OS=Cucumis melo OX=3656 GN=LOC103488427 PE=4 SV=1	[more]
tr\|A0A0A0KDW9\|A0A0A0KDW9_CUCSA	5.3e-231	90.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399780 PE=4 SV=1	[more]
tr\|A0A2P6SAC4\|A0A2P6SAC4_ROSCH	7.7e-190	75.24	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]
tr\|A0A251L522\|A0A251L522_MANES	1.7e-189	75.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G156500 PE=4 SV=...	[more]
tr\|D7TX74\|D7TX74_VITVI	1.9e-188	74.76	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0084g00580 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR036397	RNaseH_sf
IPR010666	Znf_GRF
IPR013520	Exonuclease_RNaseT/DNA_pol3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg20559	Carg20559	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg20559-RA	Carg20559-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20559-RA.CDS.4	Carg20559-RA.CDS.4	CDS
Carg20559-RA.CDS.3	Carg20559-RA.CDS.3	CDS
Carg20559-RA.CDS.2	Carg20559-RA.CDS.2	CDS
Carg20559-RA.CDS.1	Carg20559-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20559-RA.five_prime_UTR.2	Carg20559-RA.five_prime_UTR.2	five_prime_UTR
Carg20559-RA.five_prime_UTR.1	Carg20559-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg20559-RA.exon.5	Carg20559-RA.exon.5	exon
Carg20559-RA.exon.4	Carg20559-RA.exon.4	exon
Carg20559-RA.exon.3	Carg20559-RA.exon.3	exon
Carg20559-RA.exon.2	Carg20559-RA.exon.2	exon
Carg20559-RA.exon.1	Carg20559-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	PANTHER	PTHR23044:SF35	SUBFAMILY NOT NAMED	coord: 10..416
None	No IPR available	PANTHER	PTHR23044	3'-5' EXONUCLEASE ERI1-RELATED	coord: 10..416
None	No IPR available	CDD	cd06133	ERI-1_3'hExo_like	coord: 141..317 e-value: 2.63913E-66 score: 210.54
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 140..322 e-value: 2.0E-18 score: 77.2
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 142..313 e-value: 4.6E-26 score: 92.2
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 370..414 e-value: 7.5E-6 score: 25.9
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 130..344 e-value: 6.0E-73 score: 247.1
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 138..327