Carg19781-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19781-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	phototropin-2
Location	Cucurbita_argyrosperma_scaffold_143 : 288254 .. 289585 (-)
Sequence length	878

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGTTTGTCAGCTGCTCTCCTTTGCATTTTCTGTACTTTTGTTGAGTTTTGGTTTATGGGGAAGATGGTTTCTTCTCTCTGTTTTCATTTCCTGATCTCTTAAACTTCACTTCTAAGCCAGGCATGGTTTCTGGGTTTCTAGAATTCAGTTGAAAGGTTGTAAATTGTATGAATTTCCCATTTGTGGAAGCTTTTTCTTCTGCTTACTTCACTTACTTCCAAGTGGATTCACTCTGTTCTTTTTTTTCTTTGTATAATTGGATCATGCTGGTACTTGTCTTTTTCTTCTTGTTTGTCAGCTGCTCTCTTTTGCATTGTCTGTACTTTTTTGAGTTTTGGTTTGTGGGGAAGATGGCTTTTTCTCTCTGTTTTCATTTCCTGATCTCTTTTGTAGTTGGGTTTCCTTTTTCCTTTTCACTGTCAAGCTCTGTTTTTGACGTCTAAGATTGTCTCAGTTTTCTCAGCTGTTTTGAGTATTTATAACTTTGAAATCTTGGTGAAGTCCCAATTCTAATTTGAAATCACTTGGTAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGGTAAGATCATTTATGTACTGACTAATCACTGTAATTGAAAAGAAAAAACTGGTAAGATCATTTCCTTTTGGGTGTCAGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

mRNA sequence

TCTTGTTTGTCAGCTGCTCTCCTTTGCATTTTCTGTACTTTTGTTGAGTTTTGGTTTATGGGGAAGATGGTTTCTTCTCTCTGTTTTCATTTCCTGATCTCTTAAACTTCACTTCTAAGCCAGGCATGGTTTCTGGGTTTCTAGAATTCAGTTGAAAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

Coding sequence (CDS)

ATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

Protein sequence

MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGLDFFFF

Homology

[Close]

BLAST of Carg19781-RA vs. NCBI nr
Match: XP_022946997.1 (phototropin-2-like [Cucurbita moschata])

HSP 1 Score: 432.2 bits (1110), Expect = 1.1e-117
Identity = 219/222 (98.65%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 120

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDE+IGKNCRFLQGPETDQKEVEKIRYAV
Sbjct: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEIIGKNCRFLQGPETDQKEVEKIRYAV 180

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIG+
Sbjct: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGM 222

[Close]

BLAST of Carg19781-RA vs. NCBI nr
Match: XP_023534598.1 (phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534599.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534600.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534601.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534602.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534604.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534605.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534606.1 phototropin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 4.2e-117
Identity = 218/222 (98.20%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 3   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 62

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 63  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 122

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEV+KIRYAV
Sbjct: 123 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVDKIRYAV 182

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNG+TIKFIG+
Sbjct: 183 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGNTIKFIGM 224

[Close]

BLAST of Carg19781-RA vs. NCBI nr
Match: XP_022970922.1 (phototropin-2-like [Cucurbita maxima] >XP_022970923.1 phototropin-2-like [Cucurbita maxima] >XP_022970924.1 phototropin-2-like [Cucurbita maxima] >XP_022970925.1 phototropin-2-like [Cucurbita maxima] >XP_022970926.1 phototropin-2-like [Cucurbita maxima] >XP_022970927.1 phototropin-2-like [Cucurbita maxima] >XP_022970928.1 phototropin-2-like [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 2.0e-114
Identity = 214/222 (96.40%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWM  DGESNASN  ENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 1   MEDKRGISSNGPLDKWMTFDGESNASNTPENVAKEDRKSWQSSSKGVISTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 120

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV
Sbjct: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKK+GTPFWNLLTITPIKDDNG TIKFIG+
Sbjct: 181 KNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGKTIKFIGM 222

[Close]

BLAST of Carg19781-RA vs. NCBI nr
Match: XP_008448153.1 (PREDICTED: phototropin-2 [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 186/227 (81.94%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDK+G+SS  P DKWMA D ESN +N   N +KEDRKS QSSS  ++STEANIAERAAE
Sbjct: 1   MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSS--IVSTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPI+YASSGFFGMTGY S+EVIG+NCRFLQGPETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781-RA vs. NCBI nr
Match: XP_004140063.1 (PREDICTED: phototropin-2 [Cucumis sativus] >XP_011656901.1 PREDICTED: phototropin-2 [Cucumis sativus] >KGN46635.1 hypothetical protein Csa_6G116680 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 182/227 (80.18%), Postives = 204/227 (89.87%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           ME+K+G+S+  P DKWMA D ESN +N   N +KED+KS QSSS+  +S EANIAERAAE
Sbjct: 1   MEEKQGMSTTKPTDKWMAFDSESNTTNTPGNESKEDKKSLQSSSR--VSKEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPIVYASSGFFGMTGY S+EVIG+NCRFLQG ETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781-RA vs. TAIR10
Match: AT5G58140.2 (phototropin 2)

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-57
Identity = 126/225 (56.00%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDG-ESNASNAQENVAKEDRKSWQSSSKGV-ISTEANIAERA 60
           + D   +S    L+ +  S G E++ S +  +    D  +  SSSK +     A I ER 
Sbjct: 11  LNDAESLSERRSLEIFNPSSGKETHGSTSSSSKPPLDGNNKGSSSKWMEFQDSAKITERT 70

Query: 61  AEWGL-VVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDA 120
           AEWGL  V+ D+ D     I  + S E   SK  S + S    +  SG FPRVSQELK A
Sbjct: 71  AEWGLSAVKPDSGD---DGISFKLSSEVERSKNMSRRSSEESTSSESGAFPRVSQELKTA 130

Query: 121 LASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIR 180
           L++L+QTFVVSDAT+P CPIVYASSGFF MTGY S E++G+NCRFLQGP+TD+ EV KIR
Sbjct: 131 LSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIR 190

Query: 181 YAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             VKNGKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 191 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGM 232

[Close]

BLAST of Carg19781-RA vs. TAIR10
Match: AT3G45780.1 (phototropin 1)

HSP 1 Score: 184.5 bits (467), Expect = 7.3e-47
Identity = 104/222 (46.85%), Postives = 143/222 (64.41%), Query Frame = 0


Query: 16  WMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFK 75
           WMA    S  + +++ +  E         K  ++ E    +RAAEWGLV++TD + G  +
Sbjct: 85  WMALKDPSPETISKKTITAE------KPQKSAVAAE----QRAAEWGLVLKTDTKTGKPQ 144

Query: 76  AIVGRSSG----EGGGSKISSEKIS-----GAGKTESSGV------FPRVSQELKDALAS 135
            +  R+SG    +  G K +S++ S      +G+     V       PRVS++LKDAL++
Sbjct: 145 GVGVRNSGGTENDPNGKKTTSQRNSQNSCRSSGEMSDGDVPGGRSGIPRVSEDLKDALST 204

Query: 136 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 195
            +QTFVVSDAT+PD PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E+ KIR  +
Sbjct: 205 FQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADELAKIRETL 264

Query: 196 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             G +YCGR+LNYKK+GT FWNLLTI PIKD++G  +KFIG+
Sbjct: 265 AAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGM 296

[Close]

BLAST of Carg19781-RA vs. TAIR10
Match: AT2G02710.1 (PAS/LOV protein B)

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-21
Identity = 45/115 (39.13%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 110 VSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETD 169
           +S  L  +L  ++Q+FV+++   PD PI+YAS  F  +TGY   EV+G+NCRFL G +TD
Sbjct: 246 LSSSLVISLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTD 305

Query: 170 QKEVEKIRYAVKNGKSYCGRLLNY--KKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
              + +++  +  G+S   ++LNY  +K+ + FWNLL I+P+++ +G T  F+G+
Sbjct: 306 SSVLYEMKECILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGKTAYFVGV 360

[Close]

BLAST of Carg19781-RA vs. TAIR10
Match: AT5G57360.2 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-20
Identity = 55/151 (36.42%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 87  GSKISSEKISGAGKTESSGVFP---RVSQELKDALASLEQTFVVSDATRPDCPIVYASSG 146
           GS +S++  S     E  G+FP    +   + + L +    FVV+DA  PD PI+Y ++ 
Sbjct: 6   GSDLSADDASSLADDEEGGLFPGGGPIPYPVGNLLHTAPCGFVVTDAVEPDQPIIYVNTV 65

Query: 147 FFGMTGYGSDEVIGKNCRFLQ---------GPETDQKEVEKIRYAVKNGKSYCGRLLNYK 206
           F  +TGY ++EV+G NCRFLQ          P  D   V +IR  +  G  + G LLN++
Sbjct: 66  FEMVTGYRAEEVLGGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFR 125

Query: 207 KNGTPFWNLLTITPIKDDNGSTIKFIGLDFF 226
           K+G+P  N L +TPI  D+ +    IG+ FF
Sbjct: 126 KDGSPLMNRLRLTPIYGDDDTITHIIGIQFF 156

[Close]

BLAST of Carg19781-RA vs. TAIR10
Match: AT1G68050.1 (flavin-binding, kelch repeat, f box 1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 83  GEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASL------EQTFVVSDATRPDCP 142
           GE  G +    ++  A +  + G+  +V  E       +        +F+VSDA  PD P
Sbjct: 8   GEATGKRKKRGRVEEAEEYCNDGIEEQVEDEKLPLEVGMFYYPMTPPSFIVSDALEPDFP 67

Query: 143 IVYASSGFFGMTGYGSDEVIGKNCRFLQ---------GPETDQKEVEKIRYAVKNGKSYC 202
           ++Y +  F   TGY +DEV+G+NCRFLQ          P  D   V +IR  ++ G  + 
Sbjct: 68  LIYVNRVFEVFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 127

Query: 203 GRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGLDFF 226
           G LLN++K+GTP  N L + PI+DD+G+    IG+  F
Sbjct: 128 GELLNFRKDGTPLVNRLRLAPIRDDDGTITHVIGIQVF 165

[Close]

BLAST of Carg19781-RA vs. Swiss-Prot
Match: sp|P93025|PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-56
Identity = 126/225 (56.00%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDG-ESNASNAQENVAKEDRKSWQSSSKGV-ISTEANIAERA 60
           + D   +S    L+ +  S G E++ S +  +    D  +  SSSK +     A I ER 
Sbjct: 11  LNDAESLSERRSLEIFNPSSGKETHGSTSSSSKPPLDGNNKGSSSKWMEFQDSAKITERT 70

Query: 61  AEWGL-VVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDA 120
           AEWGL  V+ D+ D     I  + S E   SK  S + S    +  SG FPRVSQELK A
Sbjct: 71  AEWGLSAVKPDSGD---DGISFKLSSEVERSKNMSRRSSEESTSSESGAFPRVSQELKTA 130

Query: 121 LASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIR 180
           L++L+QTFVVSDAT+P CPIVYASSGFF MTGY S E++G+NCRFLQGP+TD+ EV KIR
Sbjct: 131 LSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIR 190

Query: 181 YAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             VKNGKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 191 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGM 232

[Close]

BLAST of Carg19781-RA vs. Swiss-Prot
Match: sp|Q9ST27|PHOT2_ORYSJ (Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 76  AIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDC 135
           A  GR SG  G  K S +   G G+  S    PRVSQELKDAL+SL+QTFVVSDATRPDC
Sbjct: 58  ATAGRDSGGTGSGKSSVD--GGVGRA-SHDSLPRVSQELKDALSSLQQTFVVSDATRPDC 117

Query: 136 PIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKK 195
           PI+YAS GFF MTGY   EV+G+NCRFLQGP+TD  EV KIR AVK+G+S+CGRLLNY+K
Sbjct: 118 PIIYASEGFFTMTGYSPREVVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRK 177

Query: 196 NGTPFWNLLTITPIKDDNGSTIKFIGL 223
           +G PFWNLLT+TPI+DDNG  IKFIG+
Sbjct: 178 DGAPFWNLLTVTPIRDDNGKVIKFIGM 201

[Close]

BLAST of Carg19781-RA vs. Swiss-Prot
Match: sp|O48963|PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-45
Identity = 104/222 (46.85%), Postives = 143/222 (64.41%), Query Frame = 0


Query: 16  WMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFK 75
           WMA    S  + +++ +  E         K  ++ E    +RAAEWGLV++TD + G  +
Sbjct: 85  WMALKDPSPETISKKTITAE------KPQKSAVAAE----QRAAEWGLVLKTDTKTGKPQ 144

Query: 76  AIVGRSSG----EGGGSKISSEKIS-----GAGKTESSGV------FPRVSQELKDALAS 135
            +  R+SG    +  G K +S++ S      +G+     V       PRVS++LKDAL++
Sbjct: 145 GVGVRNSGGTENDPNGKKTTSQRNSQNSCRSSGEMSDGDVPGGRSGIPRVSEDLKDALST 204

Query: 136 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 195
            +QTFVVSDAT+PD PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E+ KIR  +
Sbjct: 205 FQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADELAKIRETL 264

Query: 196 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             G +YCGR+LNYKK+GT FWNLLTI PIKD++G  +KFIG+
Sbjct: 265 AAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGM 296

[Close]

BLAST of Carg19781-RA vs. Swiss-Prot
Match: sp|Q2QYY8|PHT1A_ORYSJ (Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 93/167 (55.69%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 56  ERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELK 115
           +RAAEWGLV++TD   G  + +  R S    GS  +S             + PRVS+EL+
Sbjct: 73  QRAAEWGLVLQTDHHTGLPQGVSARPS---SGSARTSXXXXXXXXXXXXAI-PRVSEELR 132

Query: 116 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 175
            AL++ +QTFVVSDAT P+ PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E++K
Sbjct: 133 AALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDK 192

Query: 176 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IR ++ NG +YCGR+LNYKK+GTPFWNLLTI PIKD++G  +KFIG+
Sbjct: 193 IRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGM 235

[Close]

BLAST of Carg19781-RA vs. Swiss-Prot
Match: sp|Q2RBR1|PHT1B_ORYSJ (Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.8e-45
Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 56  ERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELK 115
           +RAAEWGLV++TD   G  + +  R S    GS  +S             + PRVS+EL+
Sbjct: 73  QRAAEWGLVLQTDHHTGLPQGVSARPS---SGSARTSXXXXXXXXXXXXAI-PRVSEELR 132

Query: 116 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 175
            AL+  +QTFVVSDAT P+ PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E++K
Sbjct: 133 AALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDK 192

Query: 176 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IR ++ NG +YCGR+LNYKK+GTPFWNLLTI PIKD++G  +KFIG+
Sbjct: 193 IRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGM 235

[Close]

BLAST of Carg19781-RA vs. TrEMBL
Match: tr|A0A1S3BJM6|A0A1S3BJM6_CUCME (phototropin-2 OS=Cucumis melo OX=3656 GN=LOC103490438 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 4.2e-97
Identity = 186/227 (81.94%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDK+G+SS  P DKWMA D ESN +N   N +KEDRKS QSSS  ++STEANIAERAAE
Sbjct: 1   MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSS--IVSTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPI+YASSGFFGMTGY S+EVIG+NCRFLQGPETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781-RA vs. TrEMBL
Match: tr|A0A0A0KA92|A0A0A0KA92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116680 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 8.7e-95
Identity = 182/227 (80.18%), Postives = 204/227 (89.87%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           ME+K+G+S+  P DKWMA D ESN +N   N +KED+KS QSSS+  +S EANIAERAAE
Sbjct: 1   MEEKQGMSTTKPTDKWMAFDSESNTTNTPGNESKEDKKSLQSSSR--VSKEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPIVYASSGFFGMTGY S+EVIG+NCRFLQG ETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781-RA vs. TrEMBL
Match: tr|A0A2C9W849|A0A2C9W849_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G096100 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 6.9e-68
Identity = 149/229 (65.07%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 8   SSNGPLDKWMASDGE-SNASN----AQENVAKEDRKSWQS----SSKGVISTEANIAERA 67
           S   P++KWMA + E +N SN    A  N+A +D +S+ +    SS   I TEA+IAER 
Sbjct: 63  SRKEPVNKWMAFESEGANKSNFKSSADANLAAKDDRSFYNFNGQSSSNKILTEASIAERT 122

Query: 68  AEWGLVVETDAEDGSFKAIVGRSSGEGG-GSKISSEKISG----AGKTESSGVFPRVSQE 127
           AEWGLVV++D  +GSFKAI   SSG+GG G K SSE+ +       +   +G FPRVSQE
Sbjct: 123 AEWGLVVKSDGGEGSFKAI-KLSSGDGGDGRKYSSERFTAMSTRTSEESEAGAFPRVSQE 182

Query: 128 LKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEV 187
           LKDALA+L+QTFVVSDAT+PDCPI+YASSGFF MTGY S EVIG+NCRFLQGPETDQ EV
Sbjct: 183 LKDALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDQAEV 242

Query: 188 EKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
            KIR AVK GKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 243 AKIRDAVKKGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDRGNTIKFIGM 290

[Close]

BLAST of Carg19781-RA vs. TrEMBL
Match: tr|A0A126WYY0|A0A126WYY0_9ROSA (Putative LOV domain-containing protein OS=Celtis occidentalis OX=228587 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66
Identity = 137/216 (63.43%), Postives = 165/216 (76.39%), Query Frame = 0


Query: 13  LDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDG 72
           ++KWMA   E +     +    E       S +G+I+ +A IAER AEWGLVV++D  +G
Sbjct: 24  INKWMAFGKEGSPGEYSKTGNAE-------SGQGIITEKAIIAERTAEWGLVVKSDVGEG 83

Query: 73  SFKAIV------GRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFV 132
           SFKAI       G+ SG+   +K S E    +G++ S G FPRVSQELKDAL++L+QTFV
Sbjct: 84  SFKAIAGGGMTSGKLSGDAERAKNSLESTRTSGESVSEGAFPRVSQELKDALSTLQQTFV 143

Query: 133 VSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSY 192
           VSDAT+PDCPI+YAS GFFGMTGY S EVIG+NCRFLQGPETDQKEVEKIR AVKNG+SY
Sbjct: 144 VSDATKPDCPIMYASIGFFGMTGYSSKEVIGRNCRFLQGPETDQKEVEKIRDAVKNGRSY 203

Query: 193 CGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           CGR+LNYKK+GTPFWNLLTITPIKDD G+TIKFIG+
Sbjct: 204 CGRILNYKKDGTPFWNLLTITPIKDDRGNTIKFIGM 232

[Close]

BLAST of Carg19781-RA vs. TrEMBL
Match: tr|A0A126WY52|A0A126WY52_9ROSI (Putative LOV domain-containing protein OS=Quassia amara OX=43725 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.0e-66
Identity = 139/212 (65.57%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 15  KWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSF 74
           KWMA +GESN  N+   V+ E   + +      I T A+IAER AEWGLVV++   +GSF
Sbjct: 41  KWMAFEGESN-GNSNIKVSDESNGTNKERKGDKILTGASIAERTAEWGLVVKSGVGEGSF 100

Query: 75  KAIVGRSSGEGGGSKISSEKISG----AGKTESSGVFPRVSQELKDALASLEQTFVVSDA 134
           KA+  R SG+G  SK SSE+ +       +   SGVFPRVSQELK ALA+L+QTFVVSDA
Sbjct: 101 KAVSLRPSGDGERSKNSSERFAAESTRTSEESESGVFPRVSQELKAALATLQQTFVVSDA 160

Query: 135 TRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRL 194
           T+P+CPI+YASSGFF MTGY S EVIG+NCRFLQGPETD+ EV KIR AV+ GKSYCGRL
Sbjct: 161 TKPECPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDRNEVAKIRDAVREGKSYCGRL 220

Query: 195 LNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           LNYKK+GTPFWNLLTITPIKDDNG TIKFIG+
Sbjct: 221 LNYKKDGTPFWNLLTITPIKDDNGKTIKFIGM 251

The following BLAST results are available for this feature:

BLAST of Carg19781-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946997.1	1.1e-117	98.65	phototropin-2-like [Cucurbita moschata]	[more]
XP_023534598.1	4.2e-117	98.20	phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534599.1 phototropin-2-li...	[more]
XP_022970922.1	2.0e-114	96.40	phototropin-2-like [Cucurbita maxima] >XP_022970923.1 phototropin-2-like [Cucurb...	[more]
XP_008448153.1	6.3e-97	81.94	PREDICTED: phototropin-2 [Cucumis melo]	[more]
XP_004140063.1	1.3e-94	80.18	PREDICTED: phototropin-2 [Cucumis sativus] >XP_011656901.1 PREDICTED: phototropi...	[more]

BLAST of Carg19781-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58140.2	1.2e-57	56.00	phototropin 2	[more]
AT3G45780.1	7.3e-47	46.85	phototropin 1	[more]
AT2G02710.1	5.3e-21	39.13	PAS/LOV protein B	[more]
AT5G57360.2	4.5e-20	36.42	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G68050.1	1.4e-18	34.18	flavin-binding, kelch repeat, f box 1	[more]

BLAST of Carg19781-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93025\|PHOT2_ARATH	2.2e-56	56.00	Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2	[more]
sp\|Q9ST27\|PHOT2_ORYSJ	2.3e-50	68.03	Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1	[more]
sp\|O48963\|PHOT1_ARATH	1.3e-45	46.85	Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1	[more]
sp\|Q2QYY8\|PHT1A_ORYSJ	1.7e-45	55.69	Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2	[more]
sp\|Q2RBR1\|PHT1B_ORYSJ	3.8e-45	55.69	Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2	[more]

BLAST of Carg19781-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJM6\|A0A1S3BJM6_CUCME	4.2e-97	81.94	phototropin-2 OS=Cucumis melo OX=3656 GN=LOC103490438 PE=4 SV=1	[more]
tr\|A0A0A0KA92\|A0A0A0KA92_CUCSA	8.7e-95	80.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116680 PE=4 SV=1	[more]
tr\|A0A2C9W849\|A0A2C9W849_MANES	6.9e-68	65.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G096100 PE=4 SV=...	[more]
tr\|A0A126WYY0\|A0A126WYY0_9ROSA	2.9e-66	63.43	Putative LOV domain-containing protein OS=Celtis occidentalis OX=228587 PE=2 SV=...	[more]
tr\|A0A126WY52\|A0A126WY52_9ROSI	5.0e-66	65.57	Putative LOV domain-containing protein OS=Quassia amara OX=43725 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000155	phosphorelay sensor kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR035965	PAS-like_dom_sf
IPR000700	PAS-assoc_C
IPR000014	PAS

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009365	protein histidine kinase complex
molecular_function	GO:0000155	phosphorelay sensor kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19781	Carg19781	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19781-RA	Carg19781-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19781-RA.CDS.2	Carg19781-RA.CDS.2	CDS
Carg19781-RA.CDS.1	Carg19781-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19781-RA.five_prime_UTR.2	Carg19781-RA.five_prime_UTR.2	five_prime_UTR
Carg19781-RA.five_prime_UTR.1	Carg19781-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19781-RA.exon.3	Carg19781-RA.exon.3	exon
Carg19781-RA.exon.2	Carg19781-RA.exon.2	exon
Carg19781-RA.exon.1	Carg19781-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000014	PAS domain	TIGRFAM	TIGR00229	TIGR00229	coord: 137..219 e-value: 2.9E-9 score: 35.1
IPR000014	PAS domain	PFAM	PF13426	PAS_9	coord: 131..221 e-value: 1.8E-19 score: 69.8
IPR000014	PAS domain	PROSITE	PS50112	PAS	coord: 110..183 score: 12.646
IPR000014	PAS domain	CDD	cd00130	PAS	coord: 137..221 e-value: 3.88073E-9 score: 50.7095
None	No IPR available	GENE3D	G3DSA:3.30.450.20		coord: 124..224 e-value: 4.4E-43 score: 148.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..99
None	No IPR available	PANTHER	PTHR24351:SF173	PHOTOTROPIN-1	coord: 83..135
None	No IPR available	PANTHER	PTHR24351	RIBOSOMAL PROTEIN S6 KINASE	coord: 83..135 coord: 133..222
None	No IPR available	PANTHER	PTHR24351:SF173	PHOTOTROPIN-1	coord: 133..222
IPR000700	PAS-associated, C-terminal	PROSITE	PS50113	PAC	coord: 184..227 score: 8.621
IPR035965	PAS domain superfamily	SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	coord: 131..221