Carg19781 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19781
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	phototropin-2
Location	Cucurbita_argyrosperma_scaffold_143 : 288254 .. 289585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGTTTGTCAGCTGCTCTCCTTTGCATTTTCTGTACTTTTGTTGAGTTTTGGTTTATGGGGAAGATGGTTTCTTCTCTCTGTTTTCATTTCCTGATCTCTTAAACTTCACTTCTAAGCCAGGCATGGTTTCTGGGTTTCTAGAATTCAGTTGAAAGGTTGTAAATTGTATGAATTTCCCATTTGTGGAAGCTTTTTCTTCTGCTTACTTCACTTACTTCCAAGTGGATTCACTCTGTTCTTTTTTTTCTTTGTATAATTGGATCATGCTGGTACTTGTCTTTTTCTTCTTGTTTGTCAGCTGCTCTCTTTTGCATTGTCTGTACTTTTTTGAGTTTTGGTTTGTGGGGAAGATGGCTTTTTCTCTCTGTTTTCATTTCCTGATCTCTTTTGTAGTTGGGTTTCCTTTTTCCTTTTCACTGTCAAGCTCTGTTTTTGACGTCTAAGATTGTCTCAGTTTTCTCAGCTGTTTTGAGTATTTATAACTTTGAAATCTTGGTGAAGTCCCAATTCTAATTTGAAATCACTTGGTAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGGTAAGATCATTTATGTACTGACTAATCACTGTAATTGAAAAGAAAAAACTGGTAAGATCATTTCCTTTTGGGTGTCAGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

mRNA sequence

TCTTGTTTGTCAGCTGCTCTCCTTTGCATTTTCTGTACTTTTGTTGAGTTTTGGTTTATGGGGAAGATGGTTTCTTCTCTCTGTTTTCATTTCCTGATCTCTTAAACTTCACTTCTAAGCCAGGCATGGTTTCTGGGTTTCTAGAATTCAGTTGAAAGGCTGTTCTCTTCACAAATTAAAGAGAGACATTGGCAATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

Coding sequence (CDS)

ATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATTGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAATTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAGCACTATCAAATTTATTGGGTTGGATTTCTTCTTCTTCTGA

Protein sequence

MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGLDFFFF

Homology

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BLAST of Carg19781 vs. NCBI nr
Match: XP_022946997.1 (phototropin-2-like [Cucurbita moschata])

HSP 1 Score: 432.2 bits (1110), Expect = 1.1e-117
Identity = 219/222 (98.65%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 120

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDE+IGKNCRFLQGPETDQKEVEKIRYAV
Sbjct: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEIIGKNCRFLQGPETDQKEVEKIRYAV 180

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIG+
Sbjct: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGM 222

[Close]

BLAST of Carg19781 vs. NCBI nr
Match: XP_023534598.1 (phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534599.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534600.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534601.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534602.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534604.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534605.1 phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534606.1 phototropin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430.3 bits (1105), Expect = 4.2e-117
Identity = 218/222 (98.20%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 3   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 62

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 63  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 122

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEV+KIRYAV
Sbjct: 123 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVDKIRYAV 182

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNG+TIKFIG+
Sbjct: 183 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGNTIKFIGM 224

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BLAST of Carg19781 vs. NCBI nr
Match: XP_022970922.1 (phototropin-2-like [Cucurbita maxima] >XP_022970923.1 phototropin-2-like [Cucurbita maxima] >XP_022970924.1 phototropin-2-like [Cucurbita maxima] >XP_022970925.1 phototropin-2-like [Cucurbita maxima] >XP_022970926.1 phototropin-2-like [Cucurbita maxima] >XP_022970927.1 phototropin-2-like [Cucurbita maxima] >XP_022970928.1 phototropin-2-like [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 2.0e-114
Identity = 214/222 (96.40%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDKRGISSNGPLDKWM  DGESNASN  ENVAKEDRKSWQSSSKGVISTEANIAERAAE
Sbjct: 1   MEDKRGISSNGPLDKWMTFDGESNASNTPENVAKEDRKSWQSSSKGVISTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALAS 120
           WGLVVETDAEDGSFKAIVGRSSGEGGGSK SSEKISGAGKTESSGVFPRVSQELKDALAS
Sbjct: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALAS 120

Query: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180
           LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV
Sbjct: 121 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 180

Query: 181 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           KNGKSYCGRLLNYKK+GTPFWNLLTITPIKDDNG TIKFIG+
Sbjct: 181 KNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGKTIKFIGM 222

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BLAST of Carg19781 vs. NCBI nr
Match: XP_008448153.1 (PREDICTED: phototropin-2 [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 186/227 (81.94%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDK+G+SS  P DKWMA D ESN +N   N +KEDRKS QSSS  ++STEANIAERAAE
Sbjct: 1   MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSS--IVSTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPI+YASSGFFGMTGY S+EVIG+NCRFLQGPETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

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BLAST of Carg19781 vs. NCBI nr
Match: XP_004140063.1 (PREDICTED: phototropin-2 [Cucumis sativus] >XP_011656901.1 PREDICTED: phototropin-2 [Cucumis sativus] >KGN46635.1 hypothetical protein Csa_6G116680 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 182/227 (80.18%), Postives = 204/227 (89.87%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           ME+K+G+S+  P DKWMA D ESN +N   N +KED+KS QSSS+  +S EANIAERAAE
Sbjct: 1   MEEKQGMSTTKPTDKWMAFDSESNTTNTPGNESKEDKKSLQSSSR--VSKEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPIVYASSGFFGMTGY S+EVIG+NCRFLQG ETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781 vs. TAIR10
Match: AT5G58140.2 (phototropin 2)

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-57
Identity = 126/225 (56.00%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDG-ESNASNAQENVAKEDRKSWQSSSKGV-ISTEANIAERA 60
           + D   +S    L+ +  S G E++ S +  +    D  +  SSSK +     A I ER 
Sbjct: 11  LNDAESLSERRSLEIFNPSSGKETHGSTSSSSKPPLDGNNKGSSSKWMEFQDSAKITERT 70

Query: 61  AEWGL-VVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDA 120
           AEWGL  V+ D+ D     I  + S E   SK  S + S    +  SG FPRVSQELK A
Sbjct: 71  AEWGLSAVKPDSGD---DGISFKLSSEVERSKNMSRRSSEESTSSESGAFPRVSQELKTA 130

Query: 121 LASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIR 180
           L++L+QTFVVSDAT+P CPIVYASSGFF MTGY S E++G+NCRFLQGP+TD+ EV KIR
Sbjct: 131 LSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIR 190

Query: 181 YAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             VKNGKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 191 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGM 232

[Close]

BLAST of Carg19781 vs. TAIR10
Match: AT3G45780.1 (phototropin 1)

HSP 1 Score: 184.5 bits (467), Expect = 7.3e-47
Identity = 104/222 (46.85%), Postives = 143/222 (64.41%), Query Frame = 0


Query: 16  WMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFK 75
           WMA    S  + +++ +  E         K  ++ E    +RAAEWGLV++TD + G  +
Sbjct: 85  WMALKDPSPETISKKTITAE------KPQKSAVAAE----QRAAEWGLVLKTDTKTGKPQ 144

Query: 76  AIVGRSSG----EGGGSKISSEKIS-----GAGKTESSGV------FPRVSQELKDALAS 135
            +  R+SG    +  G K +S++ S      +G+     V       PRVS++LKDAL++
Sbjct: 145 GVGVRNSGGTENDPNGKKTTSQRNSQNSCRSSGEMSDGDVPGGRSGIPRVSEDLKDALST 204

Query: 136 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 195
            +QTFVVSDAT+PD PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E+ KIR  +
Sbjct: 205 FQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADELAKIRETL 264

Query: 196 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             G +YCGR+LNYKK+GT FWNLLTI PIKD++G  +KFIG+
Sbjct: 265 AAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGM 296

[Close]

BLAST of Carg19781 vs. TAIR10
Match: AT2G02710.1 (PAS/LOV protein B)

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-21
Identity = 45/115 (39.13%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 110 VSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETD 169
           +S  L  +L  ++Q+FV+++   PD PI+YAS  F  +TGY   EV+G+NCRFL G +TD
Sbjct: 246 LSSSLVISLGRIKQSFVLTNPCLPDMPIIYASDAFLTLTGYKRQEVLGQNCRFLSGVDTD 305

Query: 170 QKEVEKIRYAVKNGKSYCGRLLNY--KKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
              + +++  +  G+S   ++LNY  +K+ + FWNLL I+P+++ +G T  F+G+
Sbjct: 306 SSVLYEMKECILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGKTAYFVGV 360

[Close]

BLAST of Carg19781 vs. TAIR10
Match: AT5G57360.2 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-20
Identity = 55/151 (36.42%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 87  GSKISSEKISGAGKTESSGVFP---RVSQELKDALASLEQTFVVSDATRPDCPIVYASSG 146
           GS +S++  S     E  G+FP    +   + + L +    FVV+DA  PD PI+Y ++ 
Sbjct: 6   GSDLSADDASSLADDEEGGLFPGGGPIPYPVGNLLHTAPCGFVVTDAVEPDQPIIYVNTV 65

Query: 147 FFGMTGYGSDEVIGKNCRFLQ---------GPETDQKEVEKIRYAVKNGKSYCGRLLNYK 206
           F  +TGY ++EV+G NCRFLQ          P  D   V +IR  +  G  + G LLN++
Sbjct: 66  FEMVTGYRAEEVLGGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFR 125

Query: 207 KNGTPFWNLLTITPIKDDNGSTIKFIGLDFF 226
           K+G+P  N L +TPI  D+ +    IG+ FF
Sbjct: 126 KDGSPLMNRLRLTPIYGDDDTITHIIGIQFF 156

[Close]

BLAST of Carg19781 vs. TAIR10
Match: AT1G68050.1 (flavin-binding, kelch repeat, f box 1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 0


Query: 83  GEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASL------EQTFVVSDATRPDCP 142
           GE  G +    ++  A +  + G+  +V  E       +        +F+VSDA  PD P
Sbjct: 8   GEATGKRKKRGRVEEAEEYCNDGIEEQVEDEKLPLEVGMFYYPMTPPSFIVSDALEPDFP 67

Query: 143 IVYASSGFFGMTGYGSDEVIGKNCRFLQ---------GPETDQKEVEKIRYAVKNGKSYC 202
           ++Y +  F   TGY +DEV+G+NCRFLQ          P  D   V +IR  ++ G  + 
Sbjct: 68  LIYVNRVFEVFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 127

Query: 203 GRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGLDFF 226
           G LLN++K+GTP  N L + PI+DD+G+    IG+  F
Sbjct: 128 GELLNFRKDGTPLVNRLRLAPIRDDDGTITHVIGIQVF 165

[Close]

BLAST of Carg19781 vs. Swiss-Prot
Match: sp|P93025|PHOT2_ARATH (Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-56
Identity = 126/225 (56.00%), Postives = 154/225 (68.44%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDG-ESNASNAQENVAKEDRKSWQSSSKGV-ISTEANIAERA 60
           + D   +S    L+ +  S G E++ S +  +    D  +  SSSK +     A I ER 
Sbjct: 11  LNDAESLSERRSLEIFNPSSGKETHGSTSSSSKPPLDGNNKGSSSKWMEFQDSAKITERT 70

Query: 61  AEWGL-VVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDA 120
           AEWGL  V+ D+ D     I  + S E   SK  S + S    +  SG FPRVSQELK A
Sbjct: 71  AEWGLSAVKPDSGD---DGISFKLSSEVERSKNMSRRSSEESTSSESGAFPRVSQELKTA 130

Query: 121 LASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIR 180
           L++L+QTFVVSDAT+P CPIVYASSGFF MTGY S E++G+NCRFLQGP+TD+ EV KIR
Sbjct: 131 LSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIR 190

Query: 181 YAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             VKNGKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 191 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGM 232

[Close]

BLAST of Carg19781 vs. Swiss-Prot
Match: sp|Q9ST27|PHOT2_ORYSJ (Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 100/147 (68.03%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 76  AIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDC 135
           A  GR SG  G  K S +   G G+  S    PRVSQELKDAL+SL+QTFVVSDATRPDC
Sbjct: 58  ATAGRDSGGTGSGKSSVD--GGVGRA-SHDSLPRVSQELKDALSSLQQTFVVSDATRPDC 117

Query: 136 PIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKK 195
           PI+YAS GFF MTGY   EV+G+NCRFLQGP+TD  EV KIR AVK+G+S+CGRLLNY+K
Sbjct: 118 PIIYASEGFFTMTGYSPREVVGRNCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRK 177

Query: 196 NGTPFWNLLTITPIKDDNGSTIKFIGL 223
           +G PFWNLLT+TPI+DDNG  IKFIG+
Sbjct: 178 DGAPFWNLLTVTPIRDDNGKVIKFIGM 201

[Close]

BLAST of Carg19781 vs. Swiss-Prot
Match: sp|O48963|PHOT1_ARATH (Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-45
Identity = 104/222 (46.85%), Postives = 143/222 (64.41%), Query Frame = 0


Query: 16  WMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFK 75
           WMA    S  + +++ +  E         K  ++ E    +RAAEWGLV++TD + G  +
Sbjct: 85  WMALKDPSPETISKKTITAE------KPQKSAVAAE----QRAAEWGLVLKTDTKTGKPQ 144

Query: 76  AIVGRSSG----EGGGSKISSEKIS-----GAGKTESSGV------FPRVSQELKDALAS 135
            +  R+SG    +  G K +S++ S      +G+     V       PRVS++LKDAL++
Sbjct: 145 GVGVRNSGGTENDPNGKKTTSQRNSQNSCRSSGEMSDGDVPGGRSGIPRVSEDLKDALST 204

Query: 136 LEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAV 195
            +QTFVVSDAT+PD PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E+ KIR  +
Sbjct: 205 FQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADELAKIRETL 264

Query: 196 KNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
             G +YCGR+LNYKK+GT FWNLLTI PIKD++G  +KFIG+
Sbjct: 265 AAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGM 296

[Close]

BLAST of Carg19781 vs. Swiss-Prot
Match: sp|Q2QYY8|PHT1A_ORYSJ (Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 93/167 (55.69%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 56  ERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELK 115
           +RAAEWGLV++TD   G  + +  R S    GS  +S             + PRVS+EL+
Sbjct: 73  QRAAEWGLVLQTDHHTGLPQGVSARPS---SGSARTSXXXXXXXXXXXXAI-PRVSEELR 132

Query: 116 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 175
            AL++ +QTFVVSDAT P+ PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E++K
Sbjct: 133 AALSAFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDK 192

Query: 176 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IR ++ NG +YCGR+LNYKK+GTPFWNLLTI PIKD++G  +KFIG+
Sbjct: 193 IRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGM 235

[Close]

BLAST of Carg19781 vs. Swiss-Prot
Match: sp|Q2RBR1|PHT1B_ORYSJ (Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.8e-45
Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 56  ERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELK 115
           +RAAEWGLV++TD   G  + +  R S    GS  +S             + PRVS+EL+
Sbjct: 73  QRAAEWGLVLQTDHHTGLPQGVSARPS---SGSARTSXXXXXXXXXXXXAI-PRVSEELR 132

Query: 116 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 175
            AL+  +QTFVVSDAT P+ PI+YAS+GFF MTGY S EV+G+NCRFLQG  TD  E++K
Sbjct: 133 AALSVFQQTFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDK 192

Query: 176 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IR ++ NG +YCGR+LNYKK+GTPFWNLLTI PIKD++G  +KFIG+
Sbjct: 193 IRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGM 235

[Close]

BLAST of Carg19781 vs. TrEMBL
Match: tr|A0A1S3BJM6|A0A1S3BJM6_CUCME (phototropin-2 OS=Cucumis melo OX=3656 GN=LOC103490438 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 4.2e-97
Identity = 186/227 (81.94%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           MEDK+G+SS  P DKWMA D ESN +N   N +KEDRKS QSSS  ++STEANIAERAAE
Sbjct: 1   MEDKQGMSSTKPTDKWMAIDRESNTTNTPGNESKEDRKSLQSSS--IVSTEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPI+YASSGFFGMTGY S+EVIG+NCRFLQGPETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781 vs. TrEMBL
Match: tr|A0A0A0KA92|A0A0A0KA92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116680 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 8.7e-95
Identity = 182/227 (80.18%), Postives = 204/227 (89.87%), Query Frame = 0


Query: 1   MEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAE 60
           ME+K+G+S+  P DKWMA D ESN +N   N +KED+KS QSSS+  +S EANIAERAAE
Sbjct: 1   MEEKQGMSTTKPTDKWMAFDSESNTTNTPGNESKEDKKSLQSSSR--VSKEANIAERAAE 60

Query: 61  WGLVVETDAEDGSFKAIVGRSSGEGGGSKISSEKISGAGKT-----ESSGVFPRVSQELK 120
           WGLVVET+ E+GSFKAIVGR+SGEGGGSK SSEKISG+G+T     E+SGVFPRVSQELK
Sbjct: 61  WGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELK 120

Query: 121 DALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEK 180
           DALASLEQTFVVSDAT+PDCPIVYASSGFFGMTGY S+EVIG+NCRFLQG ETDQKEV+K
Sbjct: 121 DALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETDQKEVDK 180

Query: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           IRYAVKNGKSYCGRLLNYKKNGTPFWNLLT+TPIKDDNG+TIKFIG+
Sbjct: 181 IRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGM 225

[Close]

BLAST of Carg19781 vs. TrEMBL
Match: tr|A0A2C9W849|A0A2C9W849_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G096100 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 6.9e-68
Identity = 149/229 (65.07%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 8   SSNGPLDKWMASDGE-SNASN----AQENVAKEDRKSWQS----SSKGVISTEANIAERA 67
           S   P++KWMA + E +N SN    A  N+A +D +S+ +    SS   I TEA+IAER 
Sbjct: 63  SRKEPVNKWMAFESEGANKSNFKSSADANLAAKDDRSFYNFNGQSSSNKILTEASIAERT 122

Query: 68  AEWGLVVETDAEDGSFKAIVGRSSGEGG-GSKISSEKISG----AGKTESSGVFPRVSQE 127
           AEWGLVV++D  +GSFKAI   SSG+GG G K SSE+ +       +   +G FPRVSQE
Sbjct: 123 AEWGLVVKSDGGEGSFKAI-KLSSGDGGDGRKYSSERFTAMSTRTSEESEAGAFPRVSQE 182

Query: 128 LKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEV 187
           LKDALA+L+QTFVVSDAT+PDCPI+YASSGFF MTGY S EVIG+NCRFLQGPETDQ EV
Sbjct: 183 LKDALATLQQTFVVSDATKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDQAEV 242

Query: 188 EKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
            KIR AVK GKSYCGRLLNYKK+GTPFWNLLT+TPIKDD G+TIKFIG+
Sbjct: 243 AKIRDAVKKGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDRGNTIKFIGM 290

[Close]

BLAST of Carg19781 vs. TrEMBL
Match: tr|A0A126WYY0|A0A126WYY0_9ROSA (Putative LOV domain-containing protein OS=Celtis occidentalis OX=228587 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66
Identity = 137/216 (63.43%), Postives = 165/216 (76.39%), Query Frame = 0


Query: 13  LDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDG 72
           ++KWMA   E +     +    E       S +G+I+ +A IAER AEWGLVV++D  +G
Sbjct: 24  INKWMAFGKEGSPGEYSKTGNAE-------SGQGIITEKAIIAERTAEWGLVVKSDVGEG 83

Query: 73  SFKAIV------GRSSGEGGGSKISSEKISGAGKTESSGVFPRVSQELKDALASLEQTFV 132
           SFKAI       G+ SG+   +K S E    +G++ S G FPRVSQELKDAL++L+QTFV
Sbjct: 84  SFKAIAGGGMTSGKLSGDAERAKNSLESTRTSGESVSEGAFPRVSQELKDALSTLQQTFV 143

Query: 133 VSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSY 192
           VSDAT+PDCPI+YAS GFFGMTGY S EVIG+NCRFLQGPETDQKEVEKIR AVKNG+SY
Sbjct: 144 VSDATKPDCPIMYASIGFFGMTGYSSKEVIGRNCRFLQGPETDQKEVEKIRDAVKNGRSY 203

Query: 193 CGRLLNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           CGR+LNYKK+GTPFWNLLTITPIKDD G+TIKFIG+
Sbjct: 204 CGRILNYKKDGTPFWNLLTITPIKDDRGNTIKFIGM 232

[Close]

BLAST of Carg19781 vs. TrEMBL
Match: tr|A0A126WY52|A0A126WY52_9ROSI (Putative LOV domain-containing protein OS=Quassia amara OX=43725 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.0e-66
Identity = 139/212 (65.57%), Postives = 163/212 (76.89%), Query Frame = 0


Query: 15  KWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSF 74
           KWMA +GESN  N+   V+ E   + +      I T A+IAER AEWGLVV++   +GSF
Sbjct: 41  KWMAFEGESN-GNSNIKVSDESNGTNKERKGDKILTGASIAERTAEWGLVVKSGVGEGSF 100

Query: 75  KAIVGRSSGEGGGSKISSEKISG----AGKTESSGVFPRVSQELKDALASLEQTFVVSDA 134
           KA+  R SG+G  SK SSE+ +       +   SGVFPRVSQELK ALA+L+QTFVVSDA
Sbjct: 101 KAVSLRPSGDGERSKNSSERFAAESTRTSEESESGVFPRVSQELKAALATLQQTFVVSDA 160

Query: 135 TRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRL 194
           T+P+CPI+YASSGFF MTGY S EVIG+NCRFLQGPETD+ EV KIR AV+ GKSYCGRL
Sbjct: 161 TKPECPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDRNEVAKIRDAVREGKSYCGRL 220

Query: 195 LNYKKNGTPFWNLLTITPIKDDNGSTIKFIGL 223
           LNYKK+GTPFWNLLTITPIKDDNG TIKFIG+
Sbjct: 221 LNYKKDGTPFWNLLTITPIKDDNGKTIKFIGM 251

The following BLAST results are available for this feature:

BLAST of Carg19781 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946997.1	1.1e-117	98.65	phototropin-2-like [Cucurbita moschata]	[more]
XP_023534598.1	4.2e-117	98.20	phototropin-2-like [Cucurbita pepo subsp. pepo] >XP_023534599.1 phototropin-2-li...	[more]
XP_022970922.1	2.0e-114	96.40	phototropin-2-like [Cucurbita maxima] >XP_022970923.1 phototropin-2-like [Cucurb...	[more]
XP_008448153.1	6.3e-97	81.94	PREDICTED: phototropin-2 [Cucumis melo]	[more]
XP_004140063.1	1.3e-94	80.18	PREDICTED: phototropin-2 [Cucumis sativus] >XP_011656901.1 PREDICTED: phototropi...	[more]

BLAST of Carg19781 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58140.2	1.2e-57	56.00	phototropin 2	[more]
AT3G45780.1	7.3e-47	46.85	phototropin 1	[more]
AT2G02710.1	5.3e-21	39.13	PAS/LOV protein B	[more]
AT5G57360.2	4.5e-20	36.42	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G68050.1	1.4e-18	34.18	flavin-binding, kelch repeat, f box 1	[more]

BLAST of Carg19781 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93025\|PHOT2_ARATH	2.2e-56	56.00	Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2	[more]
sp\|Q9ST27\|PHOT2_ORYSJ	2.3e-50	68.03	Phototropin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT2 PE=1 SV=1	[more]
sp\|O48963\|PHOT1_ARATH	1.3e-45	46.85	Phototropin-1 OS=Arabidopsis thaliana OX=3702 GN=PHOT1 PE=1 SV=1	[more]
sp\|Q2QYY8\|PHT1A_ORYSJ	1.7e-45	55.69	Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2	[more]
sp\|Q2RBR1\|PHT1B_ORYSJ	3.8e-45	55.69	Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2	[more]

BLAST of Carg19781 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJM6\|A0A1S3BJM6_CUCME	4.2e-97	81.94	phototropin-2 OS=Cucumis melo OX=3656 GN=LOC103490438 PE=4 SV=1	[more]
tr\|A0A0A0KA92\|A0A0A0KA92_CUCSA	8.7e-95	80.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116680 PE=4 SV=1	[more]
tr\|A0A2C9W849\|A0A2C9W849_MANES	6.9e-68	65.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G096100 PE=4 SV=...	[more]
tr\|A0A126WYY0\|A0A126WYY0_9ROSA	2.9e-66	63.43	Putative LOV domain-containing protein OS=Celtis occidentalis OX=228587 PE=2 SV=...	[more]
tr\|A0A126WY52\|A0A126WY52_9ROSI	5.0e-66	65.57	Putative LOV domain-containing protein OS=Quassia amara OX=43725 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000155	phosphorelay sensor kinase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR035965	PAS-like_dom_sf
IPR000700	PAS-assoc_C
IPR000014	PAS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009365	protein histidine kinase complex
molecular_function	GO:0000155	phosphorelay sensor kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19781-RA	Carg19781-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000014	PAS domain	TIGRFAM	TIGR00229	TIGR00229	coord: 137..219 e-value: 2.9E-9 score: 35.1
IPR000014	PAS domain	PFAM	PF13426	PAS_9	coord: 131..221 e-value: 1.8E-19 score: 69.8
IPR000014	PAS domain	PROSITE	PS50112	PAS	coord: 110..183 score: 12.646
IPR000014	PAS domain	CDD	cd00130	PAS	coord: 137..221 e-value: 3.88073E-9 score: 50.7095
None	No IPR available	GENE3D	G3DSA:3.30.450.20		coord: 124..224 e-value: 4.4E-43 score: 148.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..99
None	No IPR available	PANTHER	PTHR24351:SF173	PHOTOTROPIN-1	coord: 83..135
None	No IPR available	PANTHER	PTHR24351	RIBOSOMAL PROTEIN S6 KINASE	coord: 83..135 coord: 133..222
None	No IPR available	PANTHER	PTHR24351:SF173	PHOTOTROPIN-1	coord: 133..222
IPR000700	PAS-associated, C-terminal	PROSITE	PS50113	PAC	coord: 184..227 score: 8.621
IPR035965	PAS domain superfamily	SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	coord: 131..221

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19781	CSPI07G02430	Wild cucumber (PI 183967)	carcpiB0892

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19781	Cucumber (Gy14) v1	carcgyB0973
Carg19781	Cucumber (Gy14) v1	carcgyB0974
Carg19781	Cucurbita maxima (Rimu)	carcmaB1181
Carg19781	Cucurbita maxima (Rimu)	carcmaB1183
Carg19781	Cucurbita maxima (Rimu)	carcmaB1184
Carg19781	Cucurbita maxima (Rimu)	carcmaB1186
Carg19781	Cucurbita maxima (Rimu)	carcmaB1187
Carg19781	Cucurbita moschata (Rifu)	carcmoB1150
Carg19781	Cucurbita moschata (Rifu)	carcmoB1152
Carg19781	Cucurbita moschata (Rifu)	carcmoB1154
Carg19781	Cucurbita moschata (Rifu)	carcmoB1155
Carg19781	Cucurbita moschata (Rifu)	carcmoB1156
Carg19781	Cucurbita pepo (Zucchini)	carcpeB1190
Carg19781	Cucurbita pepo (Zucchini)	carcpeB1192
Carg19781	Cucurbita pepo (Zucchini)	carcpeB1189
Carg19781	Cucurbita pepo (Zucchini)	carcpeB1193
Carg19781	Cucurbita pepo (Zucchini)	carcpeB1194
Carg19781	Wild cucumber (PI 183967)	carcpiB0891
Carg19781	Cucumber (Chinese Long) v2	carcuB0871
Carg19781	Cucumber (Chinese Long) v2	carcuB0872
Carg19781	Cucumber (Chinese Long) v3	carcucB0896
Carg19781	Bottle gourd (USVL1VR-Ls)	carlsiB776
Carg19781	Bottle gourd (USVL1VR-Ls)	carlsiB779
Carg19781	Melon (DHL92) v3.5.1	carmeB0843
Carg19781	Melon (DHL92) v3.6.1	carmedB0854
Carg19781	Watermelon (Charleston Gray)	carwcgB0827
Carg19781	Watermelon (Charleston Gray)	carwcgB0828
Carg19781	Watermelon (97103) v1	carwmB0854
Carg19781	Watermelon (97103) v1	carwmB0856
Carg19781	Watermelon (97103) v2	carwmbB0890
Carg19781	Watermelon (97103) v2	carwmbB0891
Carg19781	Watermelon (97103) v2	carwmbB0892
Carg19781	Wax gourd	carwgoB0995
Carg19781	Wax gourd	carwgoB0998
Carg19781	Wax gourd	carwgoB0999
Carg19781	Silver-seed gourd	carcarB375
Carg19781	Silver-seed gourd	carcarB376
Carg19781	Silver-seed gourd	carcarB631
Carg19781	Cucumber (Gy14) v2	carcgybB0845
Carg19781	Cucumber (Gy14) v2	carcgybB0846