Carg19683-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19683-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor bHLH84-like
Location	Cucurbita_argyrosperma_scaffold_133 : 141191 .. 142616 (+)
Sequence length	1023

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTCTTCTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCATTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAAGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCACCGACACCAGTTGACACCAACTCGAGGAAACGATCCCCGAGTTCGTATAATGTAAGATTGATAATTCGAGCTCATTTGTTTCTTTGATTATAATGATATTGTCCAGTTTGAGCATAAGCTCTCGTGGGTTTGTTTTGGACTTCCCCAGAAGGCCTGGTATCAATCAAGATGTATTCCTTAAATTAGTCAATGTGGGACTCCCTCTCAACGATCCTCAACACTAATGACATTGCGCTTTGTGATTTGATAATGAAGGTGGAAAAGACGAAGATGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGGTAACCCTCTAACCCTCTAAACCACTCCGATCGCTATTGTTAAACTCCCGAACTCCCGTTGCCATACTTGAACTCTCGAACTCTGATCTAACATGCAACTCCTTTAAATTTTCCTTCAGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTAGGCCAATCTCACACGAACATATACGATCTCGGTGTTTATCACACGATCAACAATATCTTGGTTTGTGCAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGGTAATTTTTGAATGAACAAACCATTTAATTCCATAATTTTCAAGGCTTGATTTTGTGTTGAATCCAATGTTTGCAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATGCATCACAATAG

mRNA sequence

ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTCTTCTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCATTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAAGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCACCGACACCAGTTGACACCAACTCGAGGAAACGATCCCCGAGTTCGTATAATTCAATGTGGGACTCCCTCTCAACGATCCTCAACACTAATGACATTGCGCTTTGTGATTTGATAATGAAGGTGGAAAAGACGAAGATGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATGCATCACAATAG

Coding sequence (CDS)

ATGGAACCTATAGGACCCATTTCAGAAAGGGAATGGATATCTCTCACTGGAGCTTACACAGCTGAGGAGTCTGATTTCATGGCTAATTTGCTCAACAACTATTGTCTTCCAAACGAGCTCAATCCCGGTTCGAGCTCGGCCGTCCCGTCTGCTTCTTCTTTGGCCATGGCACCCATGGATGAACCTTCTTACTATAGTAATCATTATTACACCTTGAATGAGAATGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCCTCTTTGTCCTTGGATTTCTCGATGGAAGATGTTCGGAATGGCGATCGATTGGACGATAGCGGTTCGAGTCGAAAAACAAGGCAATGCAGGCTGCAACAATTCCCTGCTGGAAGCTCACAGCCCGAAAAGAGAGCTGAGATCACGGTGGAAGAAGCTACGAAGGACGATAAAGTTGCACCGACACCAGTTGACACCAACTCGAGGAAACGATCCCCGAGTTCGTATAATTCAATGTGGGACTCCCTCTCAACGATCCTCAACACTAATGACATTGCGCTTTGTGATTTGATAATGAAGGTGGAAAAGACGAAGATGAGTACGAGGAACACGAGGGCACGGAAGAGCTCGAAGATTGCTTCGGGTAGCTGCAATGAAGAGGAGGATCACATTGTTAGTCCAAATGGGCTGTGCACAAGCAGCTTCAGCTCAGAAGATGACTGTAATGGTGGGATCACTTCCAGCTCAAGTGGAAAGCCAAGAGCCAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGGAGAGAAAGAATCAATGAAAGGTTGAGAATGTTACAAAGCCTCGTCCCGAACGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCAGTTGAGTATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAACAAGACAATGCATCACAATAG

Protein sequence

MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMDEPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ

Homology

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BLAST of Carg19683-RA vs. NCBI nr
Match: XP_022922981.1 (transcription factor bHLH84-like [Cucurbita moschata])

HSP 1 Score: 581.6 bits (1498), Expect = 1.7e-162
Identity = 312/344 (90.70%), Postives = 313/344 (90.99%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMD 60
           MEPIGPISEREWISL+GAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA SLAMAPMD
Sbjct: 1   MEPIGPISEREWISLSGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA-SLAMAPMD 60

Query: 61  EPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ 120
           EPSYYSNHYYTLNENDSHP WLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ
Sbjct: 61  EPSYYSNHYYTLNENDSHPPWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ 120

Query: 121 FPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIAL 180
           FPAGSSQPEKRAEITVEEATKDDKVA TPVDTNSRKRSPSSYN                 
Sbjct: 121 FPAGSSQPEKRAEITVEEATKDDKVASTPVDTNSRKRSPSSYN----------------- 180

Query: 181 CDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS 240
                 VEKTK STRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS
Sbjct: 181 ------VEKTKTSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS 240

Query: 241 ----SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300
               SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE
Sbjct: 241 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300

Query: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 341
           YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ
Sbjct: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 320

[Close]

BLAST of Carg19683-RA vs. NCBI nr
Match: XP_023553185.1 (transcription factor bHLH84-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570.1 bits (1468), Expect = 5.1e-159
Identity = 309/345 (89.57%), Postives = 309/345 (89.57%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMD 60
           MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA  LAMAPMD
Sbjct: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA-CLAMAPMD 60

Query: 61  EPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ 120
           EPSYYSN YYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDD GSSRKTRQCRLQQ
Sbjct: 61  EPSYYSNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDCGSSRKTRQCRLQQ 120

Query: 121 FPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIAL 180
           FPAGSSQPEKRAEITVE ATKDDKVAPTPVDTNSRKRSPSSYN                 
Sbjct: 121 FPAGSSQPEKRAEITVEVATKDDKVAPTPVDTNSRKRSPSSYN----------------- 180

Query: 181 CDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS 240
                 VEKTK STRNTRARKSSKI S SCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS
Sbjct: 181 ------VEKTKTSTRNTRARKSSKIGSASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS 240

Query: 241 ----SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300
               SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE
Sbjct: 241 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300

Query: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQD-NASQ 341
           YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQD NASQ
Sbjct: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNNASQ 321

[Close]

BLAST of Carg19683-RA vs. NCBI nr
Match: XP_022984818.1 (transcription factor bHLH85-like [Cucurbita maxima])

HSP 1 Score: 564.3 bits (1453), Expect = 2.8e-157
Identity = 304/344 (88.37%), Postives = 306/344 (88.95%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMD 60
           MEPIGPISEREWISL+GAYTAEESDFMAN LNNYCLPNELNP SSSAVPSA  LAMAPMD
Sbjct: 1   MEPIGPISEREWISLSGAYTAEESDFMANFLNNYCLPNELNPSSSSAVPSA-CLAMAPMD 60

Query: 61  EPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ 120
           EPSYY+N YYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ
Sbjct: 61  EPSYYNNPYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQQ 120

Query: 121 FPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIAL 180
           FPAGSSQPEKRAEI VEEATKDDKVAPTPVDTNSRKRS SSYN                 
Sbjct: 121 FPAGSSQPEKRAEIMVEEATKDDKVAPTPVDTNSRKRSLSSYN----------------- 180

Query: 181 CDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITS 240
                 VEKTK STRNTRARKSSKIAS SCNEEEDHIVSPNGLCTSSFSSEDDCNGGIT 
Sbjct: 181 ------VEKTKTSTRNTRARKSSKIASASCNEEEDHIVSPNGLCTSSFSSEDDCNGGITP 240

Query: 241 ----SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300
               SSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE
Sbjct: 241 SSTLSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVE 300

Query: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 341
           YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMK DNASQ
Sbjct: 301 YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKHDNASQ 320

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BLAST of Carg19683-RA vs. NCBI nr
Match: XP_004152375.1 (PREDICTED: transcription factor bHLH84 [Cucumis sativus] >KGN52770.1 hypothetical protein Csa_4G000890 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 3.7e-109
Identity = 250/369 (67.75%), Postives = 277/369 (75.07%), Query Frame = 0


Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMDEPSY 64
           G ISEREWISL+GAYTAEESDFMANLL+NYC+PNELN   S  +PS+     A  +EPSY
Sbjct: 3   GAISEREWISLSGAYTAEESDFMANLLSNYCIPNELNSDLSLEIPSS---YWASSNEPSY 62

Query: 65  Y------SNHYYTLNE---------NDSHP-LWLPNNGASLSLDFSMEDVRNGDRLDDSG 124
           Y      S++ Y L++         NDS+P LWLPNNGASLSLDFS+EDVRN D LDD+G
Sbjct: 63  YSSDASDSSNIYALSQPNNNLPYTFNDSNPTLWLPNNGASLSLDFSIEDVRNADCLDDNG 122

Query: 125 SS-RKTRQC-RLQQFPAG------SSQPEKRA-EITVEEATKDDKVAPTPVDTNSRKRSP 184
           S+ RKTRQC RLQQ PA       SSQP++RA ++ VEEA +DDKV P  V+  SRKR  
Sbjct: 123 SNIRKTRQCSRLQQSPADSVVNGKSSQPKRRANDVMVEEAMRDDKVGPVSVENFSRKRPQ 182

Query: 185 SSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVS 244
           S                       ++ VEKTK   R+ RARK+SKIASGSCN EED IVS
Sbjct: 183 S-----------------------LLDVEKTK---RSGRARKTSKIASGSCN-EEDQIVS 242

Query: 245 PNGLCTSSFSSEDDC------NGGITSS--SSGKPRASRGSATDPQSLYARKRRERINER 304
           PNG CTSSFSSEDDC      NGGITSS  S+GKPRASRGSATDPQSLYARKRRERINER
Sbjct: 243 PNGQCTSSFSSEDDCNEAQENNGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINER 302

Query: 305 LRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 341
           LR+LQSLVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK
Sbjct: 303 LRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 341

[Close]

BLAST of Carg19683-RA vs. NCBI nr
Match: XP_022149290.1 (transcription factor bHLH84-like [Momordica charantia])

HSP 1 Score: 404.1 bits (1037), Expect = 4.8e-109
Identity = 251/394 (63.71%), Postives = 276/394 (70.05%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVP--------SAS 60
           ME IG ISEREWISL+G YTAEESDFM NLL+NYCLPNELN G S  +P         + 
Sbjct: 1   MESIGAISEREWISLSGTYTAEESDFMVNLLSNYCLPNELNSGLSLEIPPSYWAANEPSP 60

Query: 61  SLAMAPMDEPSYYS----------------NHYYTLNENDSHPLWLPNNGASLSLDFSME 120
           +LAMA M+EPSYYS                N+ Y+L  NDSHPLW P NGASLSLDFSME
Sbjct: 61  ALAMAAMEEPSYYSSDASDSSNIYGLPQGNNNPYSL--NDSHPLWFP-NGASLSLDFSME 120

Query: 121 DVRNGD--RL-DDSGSSRKTRQCRLQQFPAG----------SSQPEKRAEITVEEATKDD 180
           DV N D  RL DD+GSS+KTRQCRLQQ P            SSQP++R E+T EEA +DD
Sbjct: 121 DVGNDDSARLDDDNGSSQKTRQCRLQQSPTNSAVAAAINGKSSQPKRRTEVTAEEAMRDD 180

Query: 181 KVAPT-PVDTNSRKRSPSSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKS 240
           +VAPT  +D N +KRSPS                       +  VEKTK   R+ R+RKS
Sbjct: 181 EVAPTISIDDNPKKRSPS-----------------------LPDVEKTK---RSVRSRKS 240

Query: 241 SKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNG------GITSS----------SSGKP 300
            K+ASGS   EEDHIVSPNG  TSSFSSEDDCN       G+TSS          S+GKP
Sbjct: 241 PKLASGSSCNEEDHIVSPNGQSTSSFSSEDDCNEPQEINCGVTSSTNSKGSASLTSNGKP 300

Query: 301 RASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIK 341
           RASRGSATDPQSLYARKRRERINERLR+LQSLVPNGTKVDISTMLEEAV+YVKFLQLQIK
Sbjct: 301 RASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIK 360

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BLAST of Carg19683-RA vs. TAIR10
Match: AT4G33880.1 (ROOT HAIR DEFECTIVE 6-LIKE 2)

HSP 1 Score: 155.6 bits (392), Expect = 5.4e-38
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 243 SGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQ 302
           +GK RASRG+ATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEEAV YVKFLQ
Sbjct: 263 NGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQ 322

Query: 303 LQIKLLSSDDLWMYAPIAYNGMDIGLN 330
           LQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 323 LQIKLLSSDDLWMYAPIAFNGMDIGLS 349

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BLAST of Carg19683-RA vs. TAIR10
Match: AT2G14760.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37
Identity = 131/352 (37.22%), Postives = 167/352 (47.44%), Query Frame = 0


Query: 11  EWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLA-----------MAPM 70
           EW +  G    EE+DFM  LL +Y    E   G SS+  +A+  A               
Sbjct: 6   EWSTGLGGIYTEEADFMNQLLASY----EQPCGGSSSETTATLTAYHHQGSQWNGGFCFS 65

Query: 71  DEPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQ 130
            E S YS +   +   +     + +   + +L    E+    D  + SG S    +   +
Sbjct: 66  QESSSYSGYCAAMPRQEEDNNGMEDATINTNLYLVGEETSECDATEYSGKSLLPLETVAE 125

Query: 131 QFPAGSSQPEKRAEITVEE------ATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTIL 190
                  QPE     T +E       +   +   T  D N R           +      
Sbjct: 126 NHDHSMLQPENSLTTTTDEKMFNQCESSKKRTRATTTDKNKRANKARRSQKCVEMSGENE 185

Query: 191 NTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDD 250
           N+ +          E+        R  K  K     C+++E      NG    +F S++D
Sbjct: 186 NSGE----------EEYTEKAAGKRKTKPLKPQKTCCSDDES-----NG--GDTFLSKED 245

Query: 251 CNGGITSSSSGKPRASRGSATDPQSLYAR-------------KRRERINERLRMLQSLVP 310
                  + +GK RASRG+ATDPQSLYAR             KRRERINERLR+LQ LVP
Sbjct: 246 GEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVP 305

Query: 311 NGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKL 333
           NGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGL+LKL
Sbjct: 306 NGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKL 336

[Close]

BLAST of Carg19683-RA vs. TAIR10
Match: AT1G27740.1 (root hair defective 6-like 4)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-36
Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 198 RARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSSGKPRASRGSATDPQ 257
           +++K  +++S S   +E    + N +   S S+  D      +S  GK RA++G+ATDPQ
Sbjct: 122 KSKKKQRVSSESNTVDES---NTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQ 181

Query: 258 SLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYA 317
           SLYARKRRE+INERL+ LQ+LVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYA
Sbjct: 182 SLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYA 241

Query: 318 PIAYNGMDIGLNLKLMKQ 336
           P+AYNG+D+G +  L+ +
Sbjct: 242 PLAYNGLDMGFHHNLLSR 256

[Close]

BLAST of Carg19683-RA vs. TAIR10
Match: AT5G43175.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34
Identity = 91/172 (52.91%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 171 TILNTNDIALCDLIMKVEKTKMSTRN--TRARKSSKIASGSCNEEEDHIVSPNGLCTSSF 230
           TIL +N  A+ D         + +R    + RK  K++S S    E      +G   SS+
Sbjct: 50  TILQSNYAAVLDGSNHQTNRNVDSRQDLLKPRKKQKLSSESNLVTEPKTAWRDGQSLSSY 109

Query: 231 SSEDDCNG-GITSSSS----GKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGT 290
           +S DD    G+ S++S     K +A+RG A+DPQSLYARKRRERIN+RL+ LQSLVPNGT
Sbjct: 110 NSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGT 169

Query: 291 KVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQ 336
           KVDISTMLE+AV YVKFLQLQIKLLSS+DLWMYAP+A+NG+++GL+  L+ +
Sbjct: 170 KVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHHNLLSR 221

[Close]

BLAST of Carg19683-RA vs. TAIR10
Match: AT5G37800.1 (RHD SIX-LIKE 1)

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-18
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 245 KPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQ 304
           KP+A+  S  DPQSL A+ RRERI+ERL++LQ LVPNGTKVD+ TMLE+A+ YVKFLQ+Q
Sbjct: 201 KPKATT-SPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQ 260

Query: 305 IKLLSSDDLW 315
           +K+L++D+ W
Sbjct: 261 VKVLAADEFW 269

[Close]

BLAST of Carg19683-RA vs. Swiss-Prot
Match: sp|Q7XHI9|BH084_ARATH (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-38
Identity = 131/339 (38.64%), Postives = 167/339 (49.26%), Query Frame = 0


Query: 11  EWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLA-----------MAPM 70
           EW +  G    EE+DFM  LL +Y    E   G SS+  +A+  A               
Sbjct: 6   EWSTGLGGIYTEEADFMNQLLASY----EQPCGGSSSETTATLTAYHHQGSQWNGGFCFS 65

Query: 71  DEPSYYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGSSRKTRQCRLQ 130
            E S YS +   +   +     + +   + +L    E+    D  + SG S    +   +
Sbjct: 66  QESSSYSGYCAAMPRQEEDNNGMEDATINTNLYLVGEETSECDATEYSGKSLLPLETVAE 125

Query: 131 QFPAGSSQPEKRAEITVEE------ATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTIL 190
                  QPE     T +E       +   +   T  D N R           +      
Sbjct: 126 NHDHSMLQPENSLTTTTDEKMFNQCESSKKRTRATTTDKNKRANKARRSQKCVEMSGENE 185

Query: 191 NTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDD 250
           N+ +          E+        R  K  K     C+++E      NG    +F S++D
Sbjct: 186 NSGE----------EEYTEKAAGKRKTKPLKPQKTCCSDDES-----NG--GDTFLSKED 245

Query: 251 CNGGITSSSSGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEE 310
                  + +GK RASRG+ATDPQSLYARKRRERINERLR+LQ LVPNGTKVDISTMLEE
Sbjct: 246 GEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEE 305

Query: 311 AVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKL 333
           AV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGL+LKL
Sbjct: 306 AVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKL 323

[Close]

BLAST of Carg19683-RA vs. Swiss-Prot
Match: sp|Q84WK0|BH085_ARATH (Transcription factor bHLH85 OS=Arabidopsis thaliana OX=3702 GN=BHLH85 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.8e-37
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 243 SGKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQ 302
           +GK RASRG+ATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEEAV YVKFLQ
Sbjct: 263 NGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQ 322

Query: 303 LQIKLLSSDDLWMYAPIAYNGMDIGLN 330
           LQIKLLSSDDLWMYAPIA+NGMDIGL+
Sbjct: 323 LQIKLLSSDDLWMYAPIAFNGMDIGLS 349

[Close]

BLAST of Carg19683-RA vs. Swiss-Prot
Match: sp|Q8LEG1|BH054_ARATH (Transcription factor bHLH54 OS=Arabidopsis thaliana OX=3702 GN=BHLH54 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-35
Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 198 RARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDCNGGITSSSSGKPRASRGSATDPQ 257
           +++K  +++S S   +E    + N +   S S+  D      +S  GK RA++G+ATDPQ
Sbjct: 122 KSKKKQRVSSESNTVDES---NTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQ 181

Query: 258 SLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYA 317
           SLYARKRRE+INERL+ LQ+LVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDDLWMYA
Sbjct: 182 SLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYA 241

Query: 318 PIAYNGMDIGLNLKLMKQ 336
           P+AYNG+D+G +  L+ +
Sbjct: 242 PLAYNGLDMGFHHNLLSR 256

[Close]

BLAST of Carg19683-RA vs. Swiss-Prot
Match: sp|Q3E7L7|BH139_ARATH (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-33
Identity = 91/172 (52.91%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 171 TILNTNDIALCDLIMKVEKTKMSTRN--TRARKSSKIASGSCNEEEDHIVSPNGLCTSSF 230
           TIL +N  A+ D         + +R    + RK  K++S S    E      +G   SS+
Sbjct: 50  TILQSNYAAVLDGSNHQTNRNVDSRQDLLKPRKKQKLSSESNLVTEPKTAWRDGQSLSSY 109

Query: 231 SSEDDCNG-GITSSSS----GKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGT 290
           +S DD    G+ S++S     K +A+RG A+DPQSLYARKRRERIN+RL+ LQSLVPNGT
Sbjct: 110 NSSDDEKALGLVSNTSKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGT 169

Query: 291 KVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQ 336
           KVDISTMLE+AV YVKFLQLQIKLLSS+DLWMYAP+A+NG+++GL+  L+ +
Sbjct: 170 KVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHHNLLSR 221

[Close]

BLAST of Carg19683-RA vs. Swiss-Prot
Match: sp|Q9FJ00|BH086_ARATH (Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=BHLH86 PE=3 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 5.1e-17
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 245 KPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQ 304
           KP+A+  S  DPQSL A+ RRERI+ERL++LQ LVPNGTKVD+ TMLE+A+ YVKFLQ+Q
Sbjct: 201 KPKATT-SPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQ 260

Query: 305 IKLLSSDDLW 315
           +K+L++D+ W
Sbjct: 261 VKVLAADEFW 269

[Close]

BLAST of Carg19683-RA vs. TrEMBL
Match: tr|A0A0A0KT10|A0A0A0KT10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000890 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.4e-109
Identity = 250/369 (67.75%), Postives = 277/369 (75.07%), Query Frame = 0


Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMDEPSY 64
           G ISEREWISL+GAYTAEESDFMANLL+NYC+PNELN   S  +PS+     A  +EPSY
Sbjct: 3   GAISEREWISLSGAYTAEESDFMANLLSNYCIPNELNSDLSLEIPSS---YWASSNEPSY 62

Query: 65  Y------SNHYYTLNE---------NDSHP-LWLPNNGASLSLDFSMEDVRNGDRLDDSG 124
           Y      S++ Y L++         NDS+P LWLPNNGASLSLDFS+EDVRN D LDD+G
Sbjct: 63  YSSDASDSSNIYALSQPNNNLPYTFNDSNPTLWLPNNGASLSLDFSIEDVRNADCLDDNG 122

Query: 125 SS-RKTRQC-RLQQFPAG------SSQPEKRA-EITVEEATKDDKVAPTPVDTNSRKRSP 184
           S+ RKTRQC RLQQ PA       SSQP++RA ++ VEEA +DDKV P  V+  SRKR  
Sbjct: 123 SNIRKTRQCSRLQQSPADSVVNGKSSQPKRRANDVMVEEAMRDDKVGPVSVENFSRKRPQ 182

Query: 185 SSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVS 244
           S                       ++ VEKTK   R+ RARK+SKIASGSCN EED IVS
Sbjct: 183 S-----------------------LLDVEKTK---RSGRARKTSKIASGSCN-EEDQIVS 242

Query: 245 PNGLCTSSFSSEDDC------NGGITSS--SSGKPRASRGSATDPQSLYARKRRERINER 304
           PNG CTSSFSSEDDC      NGGITSS  S+GKPRASRGSATDPQSLYARKRRERINER
Sbjct: 243 PNGQCTSSFSSEDDCNEAQENNGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINER 302

Query: 305 LRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 341
           LR+LQSLVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK
Sbjct: 303 LRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 341

[Close]

BLAST of Carg19683-RA vs. TrEMBL
Match: tr|A0A1S3BZ99|A0A1S3BZ99_CUCME (transcription factor bHLH84-like OS=Cucumis melo OX=3656 GN=LOC103494806 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.0e-107
Identity = 246/369 (66.67%), Postives = 275/369 (74.53%), Query Frame = 0


Query: 5   GPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMDEPSY 64
           G ISEREWISL+GAYTAEESDFMANLLNNYC+PNELN   +  +PS+     A  +EPSY
Sbjct: 4   GAISEREWISLSGAYTAEESDFMANLLNNYCIPNELNSDLTLEIPSS---YWASSNEPSY 63

Query: 65  Y------SNHYYTLNE---------NDSHPLWLPNNGA-SLSLDFSMEDVRNGDRLDDSG 124
           Y      S++ Y L++         N+S+PLW+PNNGA SLSLDFS+EDV N D LDD+G
Sbjct: 64  YSSDASDSSNIYALSQPNNNLPYTFNESNPLWMPNNGASSLSLDFSVEDVGNADCLDDNG 123

Query: 125 SS-RKTRQC-RLQQFPAG------SSQPEKRAE-ITVEEATKDDKVAPTPVDTNSRKRSP 184
           S+ RKTRQC RLQQ PA       SSQ ++RA+ + VEEA +DDKV P  V+  SRKR  
Sbjct: 124 SNIRKTRQCSRLQQSPADSVVNGKSSQQKRRADGVMVEEAMRDDKVGPVSVENASRKRPQ 183

Query: 185 SSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASGSCNEEEDHIVS 244
           S                       ++ VEKTK   R+ RARK+SKIASGSCN EED IVS
Sbjct: 184 S-----------------------LLDVEKTK---RSGRARKTSKIASGSCN-EEDQIVS 243

Query: 245 PNGLCTSSFSSEDDC------NGGITSS--SSGKPRASRGSATDPQSLYARKRRERINER 304
           PNG CTSSFSSEDDC      NGGITSS  S+GKPRASRGSATDPQSLYARKRRERINER
Sbjct: 244 PNGQCTSSFSSEDDCNEAQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINER 303

Query: 305 LRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 341
           LR+LQSLVPNGTKVDISTMLEEAV+YVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK
Sbjct: 304 LRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLK 342

[Close]

BLAST of Carg19683-RA vs. TrEMBL
Match: tr|A0A2C9V4L6|A0A2C9V4L6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G083200 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.1e-52
Identity = 169/380 (44.47%), Postives = 207/380 (54.47%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSASSLAMAPMD 60
           MEPIG   E EW SL+G Y +EE+ F+A LL N    +     SS      S + MA ++
Sbjct: 1   MEPIGVSLEGEWSSLSGMYRSEEAVFLAQLLGNNDSSSCFGVPSSFWSSHDSEMNMAAVN 60

Query: 61  EPSYYSNHY------------------------YTLNENDSHPLWLPNNGASLSLDFSME 120
           E S  +N Y                        Y L  NDSH + + NN +S+S+DF + 
Sbjct: 61  EDSVDTNFYNFSQGSSCYSGGSNFLFATSSQESYFL--NDSHAVLVSNN-SSMSMDFCVG 120

Query: 121 DVRN--------GDRLDDSGSSRKTRQCRLQQFPAGSSQPEKRAEITVEEATKDDKVAPT 180
           DV N         D L+   S+    +    Q P  +  P+K+  +  E+ T+D    P 
Sbjct: 121 DVINTVSYLVEGDDCLNQEISNGNVEEYGGNQQPEAADFPDKQEMLVPEQLTEDKSGKPP 180

Query: 181 PVDTNSRKRSPSSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMSTRNTRARKSSKIASG 240
            +   S+KRS               N  D          +K K   RN R++KS K+ASG
Sbjct: 181 EI---SKKRS--------------RNAGD---------AQKNK---RNARSKKSQKLASG 240

Query: 241 SCNEEEDHIVSPNGLCTSSFSSEDD------CNGGITSSSS----------GKPRASRGS 300
           + N EE +    N   TSS  SEDD       NGG  SS S          G+ RASRG+
Sbjct: 241 NNNAEECN-AGVNVPATSSCCSEDDSNGSHELNGGANSSLSLKGTPALNLNGRTRASRGA 300

Query: 301 ATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDD 333
           ATDPQSLYARKRRERINERL++LQ+LVPNGTKVDISTMLEEAV YVKFLQLQIKLLSSDD
Sbjct: 301 ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDD 347

[Close]

BLAST of Carg19683-RA vs. TrEMBL
Match: tr|A0A2I4DFS0|A0A2I4DFS0_9ROSI (transcription factor bHLH84-like OS=Juglans regia OX=51240 GN=LOC108979729 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.7e-49
Identity = 168/394 (42.64%), Postives = 201/394 (51.02%), Query Frame = 0


Query: 1   MEPIGPI-SEREWISLTGAYTAEESDFMANLLNNYC-LPNELNPGSSSAVPSA------S 60
           MEP+G I SE EW SL+G YTAEE+DFMA LLNN   LPNEL   SS  VPS       S
Sbjct: 1   MEPMGAISSEGEWGSLSGMYTAEEADFMAQLLNNNALLPNELIGDSSLGVPSTFWPGHES 60

Query: 61  SLAMAPMDEPSYYSNHYYTLNEN------------------------DSHPLWLPNNGAS 120
           S+ +  + E  Y +   Y  N N                        DSHP+ L +N +S
Sbjct: 61  SMNVEGLSESPYCT--LYMANSNLCSFSNGSSYNGTGSLRQQSYYLSDSHPV-LASNDSS 120

Query: 121 LSLDFSMEDVRN--------GDRLDDSGSSRKTRQCRLQQFPA------GSSQPEKRAEI 180
           +S+DF M  V+N         D L+   S     +      PA      GS   ++  E+
Sbjct: 121 MSMDFGMMGVKNTGSFLIEGDDCLNQENSDGNAEEYAGNYKPAAVLPQNGSLHRKEPQEM 180

Query: 181 TVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSLSTILNTNDIALCDLIMKVEKTKMST 240
            + E+  + K    P D NS+KRS                           +        
Sbjct: 181 PLPESIPEGKYNNAP-DINSKKRS---------------------------RTTGXXXXX 240

Query: 241 RNTRARKSSKIASGSCNEEEDHIVSPNGLCTSSFSSEDDC------NGGITSSSS----- 300
                                      G  +SS+SSEDDC      NGG++S  S     
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXDLIGQSSSSWSSEDDCNVSHELNGGLSSHLSKKDPA 300

Query: 301 -----GKPRASRGSATDPQSLYARKRRERINERLRMLQSLVPNGTKVDISTMLEEAVEYV 333
                G+ RASRGSATDPQSLYARKRRERINERLR+LQ+LVPNGTKVDISTMLEEAV+YV
Sbjct: 301 SSILNGRTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYV 360

[Close]

BLAST of Carg19683-RA vs. TrEMBL
Match: tr|A0A2I4DFS3|A0A2I4DFS3_9ROSI (transcription factor bHLH54-like OS=Juglans regia OX=51240 GN=LOC108979728 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.1e-44
Identity = 150/360 (41.67%), Postives = 190/360 (52.78%), Query Frame = 0


Query: 1   MEPIGPISEREWISLTGAYTAEESDFMANLLNNYCLPNELNPGSSSAVPSA------SSL 60
           ME IG ISE EW+SL+  +TAEE+DFM   L+   +PNE+N  SS  VP        S++
Sbjct: 1   MEQIGVISEGEWVSLSAMHTAEEADFMVQWLDKPSIPNEINTCSSLGVPFTFWPFYDSTM 60

Query: 61  AMAPMDEPS-----YYSNHYYTLNENDSHPLWLPNNGASLSLDFSMEDVRNGDRLDDSGS 120
            MA + E S     + S  +Y+L      PL    +G SLS        +  D L D   
Sbjct: 61  NMAGLTESSCISLEFPSTRFYSL------PLESSYSGGSLS--------QKSDYLSD--- 120

Query: 121 SRKTRQCRLQQFPAGSSQPEKRAEITVEEATKDDKVAPTPVDTNSRKRSPSSYNSMWDSL 180
                             P+     T    + D    P  +D +             +S 
Sbjct: 121 ------------------PQPILTSTYNFMSMDS--VPYLIDGDDCSNQEMVKGDAEESA 180

Query: 181 STILNTNDIALCDLIMKVEKTKMSTRNTRARKSSK--IASGSCNEEEDHIVSPNGLCTSS 240
             +  T D++          +    RN R  +S K  + S + N E+   +  +G  +SS
Sbjct: 181 GNMPETKDLS----------SGYVNRNKRIAQSKKSHMLSLTSNREKGGCLCLDGQSSSS 240

Query: 241 FSSEDDCN-----GGITSSSS----------GKPRASRGSATDPQSLYARKRRERINERL 300
            SSEDD N      G+T S S          GK RA+RGSA+DPQS+YARKRRERIN RL
Sbjct: 241 CSSEDDSNTSQELNGVTPSLSSKELPALNKKGKARATRGSASDPQSVYARKRRERINGRL 300

Query: 301 RMLQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKL 333
           R+LQ+LVPNGTKVDISTMLEE VEYVKFLQLQIKLLSSDDLWMYAP AYNG+DIGL+LK+
Sbjct: 301 RILQNLVPNGTKVDISTMLEEGVEYVKFLQLQIKLLSSDDLWMYAPFAYNGVDIGLDLKI 313

The following BLAST results are available for this feature:

BLAST of Carg19683-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922981.1	1.7e-162	90.70	transcription factor bHLH84-like [Cucurbita moschata]	[more]
XP_023553185.1	5.1e-159	89.57	transcription factor bHLH84-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984818.1	2.8e-157	88.37	transcription factor bHLH85-like [Cucurbita maxima]	[more]
XP_004152375.1	3.7e-109	67.75	PREDICTED: transcription factor bHLH84 [Cucumis sativus] >KGN52770.1 hypothetica...	[more]
XP_022149290.1	4.8e-109	63.71	transcription factor bHLH84-like [Momordica charantia]	[more]

BLAST of Carg19683-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33880.1	5.4e-38	90.80	ROOT HAIR DEFECTIVE 6-LIKE 2	[more]
AT2G14760.3	7.8e-37	37.22	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27740.1	3.9e-36	59.42	root hair defective 6-like 4	[more]
AT5G43175.1	1.3e-34	52.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G37800.1	2.8e-18	64.29	RHD SIX-LIKE 1	[more]

BLAST of Carg19683-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XHI9\|BH084_ARATH	2.3e-38	38.64	Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1	[more]
sp\|Q84WK0\|BH085_ARATH	9.8e-37	90.80	Transcription factor bHLH85 OS=Arabidopsis thaliana OX=3702 GN=BHLH85 PE=2 SV=1	[more]
sp\|Q8LEG1\|BH054_ARATH	7.0e-35	59.42	Transcription factor bHLH54 OS=Arabidopsis thaliana OX=3702 GN=BHLH54 PE=2 SV=1	[more]
sp\|Q3E7L7\|BH139_ARATH	2.3e-33	52.91	Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=...	[more]
sp\|Q9FJ00\|BH086_ARATH	5.1e-17	64.29	Putative transcription factor bHLH086 OS=Arabidopsis thaliana OX=3702 GN=BHLH86 ...	[more]

BLAST of Carg19683-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT10\|A0A0A0KT10_CUCSA	2.4e-109	67.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000890 PE=4 SV=1	[more]
tr\|A0A1S3BZ99\|A0A1S3BZ99_CUCME	3.0e-107	66.67	transcription factor bHLH84-like OS=Cucumis melo OX=3656 GN=LOC103494806 PE=4 SV...	[more]
tr\|A0A2C9V4L6\|A0A2C9V4L6_MANES	6.1e-52	44.47	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G083200 PE=4 SV=...	[more]
tr\|A0A2I4DFS0\|A0A2I4DFS0_9ROSI	3.7e-49	42.64	transcription factor bHLH84-like OS=Juglans regia OX=51240 GN=LOC108979729 PE=4 ...	[more]
tr\|A0A2I4DFS3\|A0A2I4DFS3_9ROSI	2.1e-44	41.67	transcription factor bHLH54-like OS=Juglans regia OX=51240 GN=LOC108979728 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19683	Carg19683	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19683-RA	Carg19683-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19683-RA.exon.1	Carg19683-RA.exon.1	exon
Carg19683-RA.exon.2	Carg19683-RA.exon.2	exon
Carg19683-RA.exon.3	Carg19683-RA.exon.3	exon
Carg19683-RA.exon.4	Carg19683-RA.exon.4	exon
Carg19683-RA.exon.5	Carg19683-RA.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19683-RA.CDS.1	Carg19683-RA.CDS.1	CDS
Carg19683-RA.CDS.2	Carg19683-RA.CDS.2	CDS
Carg19683-RA.CDS.3	Carg19683-RA.CDS.3	CDS
Carg19683-RA.CDS.4	Carg19683-RA.CDS.4	CDS
Carg19683-RA.CDS.5	Carg19683-RA.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 258..307 e-value: 6.7E-12 score: 55.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 262..302 e-value: 2.9E-8 score: 33.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 252..301 score: 15.44
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 261..306 e-value: 9.95548E-12 score: 58.7647
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 254..310 e-value: 8.2E-12 score: 46.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 252..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..256
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 1..333
None	No IPR available	PANTHER	PTHR16223:SF105	TRANSCRIPTION FACTOR BHLH84-RELATED	coord: 1..333