Carg19403-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19403-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Basic helix-loop-helix transcription factor
Location	Cucurbita_argyrosperma_scaffold_096 : 403805 .. 404356 (-)
Sequence length	552

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

mRNA sequence

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Coding sequence (CDS)

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Protein sequence

MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKTFLH

Homology

[Close]

BLAST of Carg19403-RA vs. NCBI nr
Match: XP_022975196.1 (transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcription factor bHLH63-like [Cucurbita maxima] >XP_022975324.1 transcription factor bHLH63-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCP 126
           TSSCP
Sbjct: 121 TSSCP 125

[Close]

BLAST of Carg19403-RA vs. NCBI nr
Match: XP_022953116.1 (transcription factor HBI1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCP 126
           RTSSCP
Sbjct: 121 RTSSCP 126

[Close]

BLAST of Carg19403-RA vs. NCBI nr
Match: XP_022953115.1 (transcription factor bHLH78-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCP 126
           RTSSCP
Sbjct: 121 RTSSCP 126

[Close]

BLAST of Carg19403-RA vs. NCBI nr
Match: XP_011658545.1 (PREDICTED: transcription factor bHLH63-like [Cucumis sativus] >KGN43145.1 hypothetical protein Csa_7G000520 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 3.1e-46
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLN+ G+C D LSVLERQR RLK+QQD L Q    QSCF+R DYGGGFPP
Sbjct: 2   MNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPP 61

Query: 61  PGVVPADHLTGFPRFMSGGGS-GGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VPADHLTGFP +MSGGG  GGG+S VEMVMGAVKPDPGL       GKFDPSLLLN 
Sbjct: 62  PVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNP 121

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 122 TACELNSSLSRTSSC 136

[Close]

BLAST of Carg19403-RA vs. NCBI nr
Match: XP_008448085.1 (PREDICTED: transcription factor bHLH49-like [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS        ++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSXXXXXXXXLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 294 TACELNSSLSRTSSC 308

[Close]

BLAST of Carg19403-RA vs. TrEMBL
Match: tr|A0A0A0K0C8|A0A0A0K0C8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000520 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLN+ G+C D LSVLERQR RLK+QQD L Q    QSCF+R DYGGGFPP
Sbjct: 2   MNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPP 61

Query: 61  PGVVPADHLTGFPRFMSGGGS-GGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VPADHLTGFP +MSGGG  GGG+S VEMVMGAVKPDPGL       GKFDPSLLLN 
Sbjct: 62  PVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNP 121

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 122 TACELNSSLSRTSSC 136

[Close]

BLAST of Carg19403-RA vs. TrEMBL
Match: tr|A0A1S3BJH6|A0A1S3BJH6_CUCME (transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS        ++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSXXXXXXXXLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 294 TACELNSSLSRTSSC 308

[Close]

BLAST of Carg19403-RA vs. TrEMBL
Match: tr|A0A2I4EFM1|A0A2I4EFM1_9ROSI (transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC108989126 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEM  CLN  G+C D ++VLERQR R+++      QQS F   D GG F  P   
Sbjct: 1   MNRALPEMSHCLNGPGNCTD-MNVLERQRARMRW------QQSYFGGCDSGGVFLEPS-- 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPG---------------LGGKFDPSL 120
            A+ +  F   + GG  GG   L ++V  +VKPDPG               LG     S+
Sbjct: 61  QANQVGNFQDLVVGG--GGCSVLDDVVTHSVKPDPGLENGWLELGRLELPKLGFGSGGSM 120

Query: 121 LLNATAYELNSSLSRTSSCP 126
             + T  E+NSS+S+TSSCP
Sbjct: 121 NGSPTGLEMNSSISKTSSCP 129

[Close]

BLAST of Carg19403-RA vs. TrEMBL
Match: tr|A0A2I4H5X9|A0A2I4H5X9_9ROSI (transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC109013802 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEML CL+  G+  D ++VLERQR R+K+Q  +  QQ+ F   ++ G F  P   
Sbjct: 1   MNRALPEMLHCLSGPGNGTD-MTVLERQRTRVKWQHQE--QQNYFGGSEFVGVFLEPS-- 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGG-------------KFDPSLLL 120
            A  +  F   +   G GGG  L +++  +VKPDPGL                F  ++L+
Sbjct: 61  QAGQVGDFQDLL---GGGGGSVLRDVMTRSVKPDPGLENGWPELGRYELPDLGFGSAVLM 120

Query: 121 NA--TAYELNSSLSRTSSCP 126
           N   T +E+N +++RTSSCP
Sbjct: 121 NGSPTGFEMNPTITRTSSCP 132

[Close]

BLAST of Carg19403-RA vs. TrEMBL
Match: tr|A0A1R3HZ69|A0A1R3HZ69_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25945 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 56/141 (39.72%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MNRAL-PEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGV 60
           MNRAL PEMLQC         +++VLERQR RLK+Q+DQ LQQ           F     
Sbjct: 1   MNRALMPEMLQC--------SDMTVLERQRARLKWQEDQQLQQE-----QQDSYFSELSG 60

Query: 61  VPADHLTGFPRFMSGGGSGGGMSLVEMVMG-AVKPDPGLG-------GK-------FDPS 120
           V + H+ GF     GG   G   L +MVM   +KPDPGL        GK       F P 
Sbjct: 61  VFSSHVQGF----QGGLMTGDSVLGDMVMARQLKPDPGLDTATWPDLGKVDMPAMGFGPC 120

Query: 121 LLLNATAYELNSSLSRTSSCP 126
              N  ++++N ++SRT+SCP
Sbjct: 121 GFGNGPSFDMNYAISRTASCP 124

The following BLAST results are available for this feature:

BLAST of Carg19403-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975196.1	1.8e-65	99.20	transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcriptio...	[more]
XP_022953116.1	1.3e-63	97.62	transcription factor HBI1-like isoform X2 [Cucurbita moschata]	[more]
XP_022953115.1	1.3e-63	97.62	transcription factor bHLH78-like isoform X1 [Cucurbita moschata]	[more]
XP_011658545.1	3.1e-46	75.56	PREDICTED: transcription factor bHLH63-like [Cucumis sativus] >KGN43145.1 hypoth...	[more]
XP_008448085.1	2.1e-42	72.59	PREDICTED: transcription factor bHLH49-like [Cucumis melo]	[more]

BLAST of Carg19403-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19403-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19403-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K0C8\|A0A0A0K0C8_CUCSA	2.1e-46	75.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000520 PE=4 SV=1	[more]
tr\|A0A1S3BJH6\|A0A1S3BJH6_CUCME	1.4e-42	72.59	transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV...	[more]
tr\|A0A2I4EFM1\|A0A2I4EFM1_9ROSI	3.3e-12	41.43	transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC108989126 PE=4 ...	[more]
tr\|A0A2I4H5X9\|A0A2I4H5X9_9ROSI	3.7e-11	38.57	transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC109013802 PE=4 ...	[more]
tr\|A0A1R3HZ69\|A0A1R3HZ69_9ROSI	2.9e-08	39.72	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25945 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19403	Carg19403	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19403-RA.CDS.1	Carg19403-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19403-RA.exon.1	Carg19403-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19403-RA	Carg19403-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..165