Carg19403 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19403
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Basic helix-loop-helix transcription factor
Location	Cucurbita_argyrosperma_scaffold_096 : 403805 .. 404356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

mRNA sequence

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Coding sequence (CDS)

ATGAACAGAGCATTGCCGGAGATGTTGCAGTGTTTGAACACTGCGGGGGACTGTCCTGATAATCTCAGTGTTCTTGAGAGGCAGAGGGGTCGTTTGAAATTCCAGCAAGATCAGCTTTTGCAGCAGAGCTGTTTCAATAGGGTTGATTACGGCGGCGGATTTCCGCCGCCGGGGGTTGTTCCGGCGGATCACCTCACGGGGTTTCCGCGGTTCATGAGTGGCGGTGGCAGCGGTGGTGGGATGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTAGGAGGCAAGTTTGATCCCTCTCTGTTGTTGAATGCCACGGCTTATGAACTCAATTCTTCTCTCTCGAGAACCTCCAGCTGCCCGCCGGCAGTGACTCCGGCTGTGTCGGCCGCCAGAAGAGAGAGCTTCAAGAAAAGAAAAGCTGAGAAAGTTCACACCACCACCACCACAACCACCGCTGCCGCCGCCCCCACCAACAACAAGAACAAGGCAAGTTCGTATAACATGAACTCTCTCTTTTTCAAAACATTCCTCCATTGA

Protein sequence

MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVVPADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSRTSSCPPAVTPAVSAARRESFKKRKAEKVHTTTTTTTAAAAPTNNKNKASSYNMNSLFFKTFLH

Homology

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BLAST of Carg19403 vs. NCBI nr
Match: XP_022975196.1 (transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcription factor bHLH63-like [Cucurbita maxima] >XP_022975324.1 transcription factor bHLH63-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120
           PADHLTGFP FMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEMVMGAVKPDPGLGGKFDPSLLLNATAYELNSSLSR 120

Query: 121 TSSCP 126
           TSSCP
Sbjct: 121 TSSCP 125

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BLAST of Carg19403 vs. NCBI nr
Match: XP_022953116.1 (transcription factor HBI1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCP 126
           RTSSCP
Sbjct: 121 RTSSCP 126

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BLAST of Carg19403 vs. NCBI nr
Match: XP_022953115.1 (transcription factor bHLH78-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 123/126 (97.62%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV
Sbjct: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDP-GLGGKFDPSLLLNATAYELNSSLS 120
           PADHLTGFP FMSGGGSGGGMSLVE+VMGAVKPDP GLGGKFDPSLLLNATAYELNSSLS
Sbjct: 61  PADHLTGFPGFMSGGGSGGGMSLVEIVMGAVKPDPGGLGGKFDPSLLLNATAYELNSSLS 120

Query: 121 RTSSCP 126
           RTSSCP
Sbjct: 121 RTSSCP 126

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BLAST of Carg19403 vs. NCBI nr
Match: XP_011658545.1 (PREDICTED: transcription factor bHLH63-like [Cucumis sativus] >KGN43145.1 hypothetical protein Csa_7G000520 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 3.1e-46
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLN+ G+C D LSVLERQR RLK+QQD L Q    QSCF+R DYGGGFPP
Sbjct: 2   MNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPP 61

Query: 61  PGVVPADHLTGFPRFMSGGGS-GGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VPADHLTGFP +MSGGG  GGG+S VEMVMGAVKPDPGL       GKFDPSLLLN 
Sbjct: 62  PVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNP 121

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 122 TACELNSSLSRTSSC 136

[Close]

BLAST of Carg19403 vs. NCBI nr
Match: XP_008448085.1 (PREDICTED: transcription factor bHLH49-like [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS        ++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSXXXXXXXXLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 294 TACELNSSLSRTSSC 308

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BLAST of Carg19403 vs. TrEMBL
Match: tr|A0A0A0K0C8|A0A0A0K0C8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000520 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLN+ G+C D LSVLERQR RLK+QQD L Q    QSCF+R DYGGGFPP
Sbjct: 2   MNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPP 61

Query: 61  PGVVPADHLTGFPRFMSGGGS-GGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VPADHLTGFP +MSGGG  GGG+S VEMVMGAVKPDPGL       GKFDPSLLLN 
Sbjct: 62  PVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNP 121

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 122 TACELNSSLSRTSSC 136

[Close]

BLAST of Carg19403 vs. TrEMBL
Match: tr|A0A1S3BJH6|A0A1S3BJH6_CUCME (transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 98/135 (72.59%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQ----QSCFNRVDYGGGFPP 60
           MNRALPEML CLNT G+C D LSVLERQR RLK+QQDQL Q    QSCFNR DYGGGFPP
Sbjct: 174 MNRALPEMLHCLNTNGNCSDTLSVLERQRARLKWQQDQLFQQPLNQSCFNRADYGGGFPP 233

Query: 61  PGVVPADHLTGFPRFMS-GGGSGGGMSLVEMVMGAVKPDPGLG------GKFDPSLLLNA 120
           P  VP DHLTGFP +MS        ++ VEMVMGAVKPDPGL       GKFDPSLLLNA
Sbjct: 234 PVSVPVDHLTGFPGYMSXXXXXXXXLAHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNA 293

Query: 121 TAYELNSSLSRTSSC 125
           TA ELNSSLSRTSSC
Sbjct: 294 TACELNSSLSRTSSC 308

[Close]

BLAST of Carg19403 vs. TrEMBL
Match: tr|A0A2I4EFM1|A0A2I4EFM1_9ROSI (transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC108989126 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 58/140 (41.43%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEM  CLN  G+C D ++VLERQR R+++      QQS F   D GG F  P   
Sbjct: 1   MNRALPEMSHCLNGPGNCTD-MNVLERQRARMRW------QQSYFGGCDSGGVFLEPS-- 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPG---------------LGGKFDPSL 120
            A+ +  F   + GG  GG   L ++V  +VKPDPG               LG     S+
Sbjct: 61  QANQVGNFQDLVVGG--GGCSVLDDVVTHSVKPDPGLENGWLELGRLELPKLGFGSGGSM 120

Query: 121 LLNATAYELNSSLSRTSSCP 126
             + T  E+NSS+S+TSSCP
Sbjct: 121 NGSPTGLEMNSSISKTSSCP 129

[Close]

BLAST of Carg19403 vs. TrEMBL
Match: tr|A0A2I4H5X9|A0A2I4H5X9_9ROSI (transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC109013802 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 1   MNRALPEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGVV 60
           MNRALPEML CL+  G+  D ++VLERQR R+K+Q  +  QQ+ F   ++ G F  P   
Sbjct: 1   MNRALPEMLHCLSGPGNGTD-MTVLERQRTRVKWQHQE--QQNYFGGSEFVGVFLEPS-- 60

Query: 61  PADHLTGFPRFMSGGGSGGGMSLVEMVMGAVKPDPGLGG-------------KFDPSLLL 120
            A  +  F   +   G GGG  L +++  +VKPDPGL                F  ++L+
Sbjct: 61  QAGQVGDFQDLL---GGGGGSVLRDVMTRSVKPDPGLENGWPELGRYELPDLGFGSAVLM 120

Query: 121 NA--TAYELNSSLSRTSSCP 126
           N   T +E+N +++RTSSCP
Sbjct: 121 NGSPTGFEMNPTITRTSSCP 132

[Close]

BLAST of Carg19403 vs. TrEMBL
Match: tr|A0A1R3HZ69|A0A1R3HZ69_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25945 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 56/141 (39.72%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MNRAL-PEMLQCLNTAGDCPDNLSVLERQRGRLKFQQDQLLQQSCFNRVDYGGGFPPPGV 60
           MNRAL PEMLQC         +++VLERQR RLK+Q+DQ LQQ           F     
Sbjct: 1   MNRALMPEMLQC--------SDMTVLERQRARLKWQEDQQLQQE-----QQDSYFSELSG 60

Query: 61  VPADHLTGFPRFMSGGGSGGGMSLVEMVMG-AVKPDPGLG-------GK-------FDPS 120
           V + H+ GF     GG   G   L +MVM   +KPDPGL        GK       F P 
Sbjct: 61  VFSSHVQGF----QGGLMTGDSVLGDMVMARQLKPDPGLDTATWPDLGKVDMPAMGFGPC 120

Query: 121 LLLNATAYELNSSLSRTSSCP 126
              N  ++++N ++SRT+SCP
Sbjct: 121 GFGNGPSFDMNYAISRTASCP 124

The following BLAST results are available for this feature:

BLAST of Carg19403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022975196.1	1.8e-65	99.20	transcription factor bHLH63-like [Cucurbita maxima] >XP_022975197.1 transcriptio...	[more]
XP_022953116.1	1.3e-63	97.62	transcription factor HBI1-like isoform X2 [Cucurbita moschata]	[more]
XP_022953115.1	1.3e-63	97.62	transcription factor bHLH78-like isoform X1 [Cucurbita moschata]	[more]
XP_011658545.1	3.1e-46	75.56	PREDICTED: transcription factor bHLH63-like [Cucumis sativus] >KGN43145.1 hypoth...	[more]
XP_008448085.1	2.1e-42	72.59	PREDICTED: transcription factor bHLH49-like [Cucumis melo]	[more]

BLAST of Carg19403 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19403 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19403 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K0C8\|A0A0A0K0C8_CUCSA	2.1e-46	75.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G000520 PE=4 SV=1	[more]
tr\|A0A1S3BJH6\|A0A1S3BJH6_CUCME	1.4e-42	72.59	transcription factor bHLH49-like OS=Cucumis melo OX=3656 GN=LOC103490373 PE=4 SV...	[more]
tr\|A0A2I4EFM1\|A0A2I4EFM1_9ROSI	3.3e-12	41.43	transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC108989126 PE=4 ...	[more]
tr\|A0A2I4H5X9\|A0A2I4H5X9_9ROSI	3.7e-11	38.57	transcription factor bHLH63-like OS=Juglans regia OX=51240 GN=LOC109013802 PE=4 ...	[more]
tr\|A0A1R3HZ69\|A0A1R3HZ69_9ROSI	2.9e-08	39.72	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25945 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19403-RA	Carg19403-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19403	CsGy7G000100	Cucumber (Gy14) v2	carcgybB0326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19403	Watermelon (97103) v2	carwmbB0323
Carg19403	Watermelon (97103) v2	carwmbB0324
Carg19403	Wax gourd	carwgoB0398
Carg19403	Silver-seed gourd	carcarB212
Carg19403	Silver-seed gourd	carcarB341
Carg19403	Cucumber (Gy14) v2	carcgybB0325
Carg19403	Cucumber (Gy14) v1	carcgyB0368
Carg19403	Cucumber (Gy14) v1	carcgyB0372
Carg19403	Cucurbita maxima (Rimu)	carcmaB0438
Carg19403	Cucurbita maxima (Rimu)	carcmaB0440
Carg19403	Cucurbita maxima (Rimu)	carcmaB0441
Carg19403	Cucurbita maxima (Rimu)	carcmaB0442
Carg19403	Cucurbita moschata (Rifu)	carcmoB0431
Carg19403	Cucurbita moschata (Rifu)	carcmoB0433
Carg19403	Cucurbita moschata (Rifu)	carcmoB0434
Carg19403	Cucurbita moschata (Rifu)	carcmoB0436
Carg19403	Cucurbita pepo (Zucchini)	carcpeB0436
Carg19403	Cucurbita pepo (Zucchini)	carcpeB0437
Carg19403	Cucurbita pepo (Zucchini)	carcpeB0438
Carg19403	Cucurbita pepo (Zucchini)	carcpeB0440
Carg19403	Wild cucumber (PI 183967)	carcpiB0347
Carg19403	Wild cucumber (PI 183967)	carcpiB0348
Carg19403	Cucumber (Chinese Long) v2	carcuB0341
Carg19403	Cucumber (Chinese Long) v2	carcuB0342
Carg19403	Cucumber (Chinese Long) v3	carcucB0346
Carg19403	Cucumber (Chinese Long) v3	carcucB0347
Carg19403	Bottle gourd (USVL1VR-Ls)	carlsiB288
Carg19403	Bottle gourd (USVL1VR-Ls)	carlsiB290
Carg19403	Melon (DHL92) v3.5.1	carmeB0320
Carg19403	Melon (DHL92) v3.5.1	carmeB0321
Carg19403	Melon (DHL92) v3.6.1	carmedB0329
Carg19403	Melon (DHL92) v3.6.1	carmedB0330
Carg19403	Watermelon (Charleston Gray)	carwcgB0307
Carg19403	Watermelon (Charleston Gray)	carwcgB0308
Carg19403	Watermelon (97103) v1	carwmB0305
Carg19403	Watermelon (97103) v1	carwmB0307