Carg19378-RA (mRNA) Silver-seed gourd

Overview
NameCarg19378-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein BASIC PENTACYSTEINE4-like
LocationCucurbita_argyrosperma_scaffold_096 : 259974 .. 262139 (-)
Sequence length444
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTTCTCCGTTTTCAAGTTTCTCCTCCGAAACCCTAGCCTTCTGTCACTCCTACCTTACGAACATTCGTTTTTCTGGTTCATGTGCCTAGTTTTCTCCCATTGATGCCGTTACTTCATTTGATTTTCTTTCAGCTGTTAGGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGTTTCTCTTCTTTCCTTTGAACAAACTTCCGTTTTGAACATTCGATACTGTTGTTTAACGACACATTAGGATTCGTATGACTTGTTTGATGTAAATTTTGCTGTCTTTGTGAGTTTACTGCGAAGCAAATGGCGATAAATACTGATGTGCGAGTGTTCGTGTCAATTTCATTACACTATACGCACTTTTTTTTTTTTTTTTTTTTTTGGTGGATTTTTAAGCAGAAGCTGAGTGAGTAACGTATGACACTATTTCCAGTTTAGCTTGTGTTGTAAGTCTTATGCTCAGAGCTCTGATGAAATTGTTTGTACGTATCGTTATACATGTATTTGTAAAGATATAATTGAATGTTCTTCTCATATTTCATATTTTAATTTTGTTCCTTATTTGGAAAACCATGCCATTGTAGGCTTTTGTTTTGCGCTGAAATGTTTAAATTGAGCCCCCATGGAATGCCAGATGTGAGCATGCTGTAACTTCCCGTTATCCAGAACTTATGATCCTAAAATTGTCAATGTAAAGAGAGTATCGTTTTTAATTATTTCAGTTGATGTAGCTTAACGAATTCATCGTGGTGTGGGACAGAGTCCGATCTTCTTTATGTGTTTACAGTAGTTTTATCATTTGTCTGCACATTGTCCAAACTATAGTCTCCCTTTGGTATGGGTTTATCTGCCAGATCCCCACGTCGGTTGGAGAGGGGAACGAAGCATTCCTTATGAGGGTGTGGAAACCTCTCCCTAGCAGGCGTGTTTTATAACCGTGAGACTGACGGCGATACGTAACGGGCCAAAGAAGACAATATTTGCTAGTAGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAAACTCCAGGCAGTGTGCTAGCAAGAACGCTAGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATTTGTTGGAGAGGGGAACGAAGCATTCCTTACAAAGGTGCGGAAACCTCTCCCTAGCAGGCGCGTTTTATAACCGTGAAACTGACGGCGATACGTAACGGGCCATAACAGACAATATCTACTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGATCCAGACACCGAGCAGTGTGCCAGCGAGGACGCTAGGTCTCCAAGAGGGTGGATTGTGAGATCCCACATCTGTTGGAGAGGGGAATGAAGCATTTATTATAAGGGTGTGAAAACCTCTCTCTATCATACACGTTTTAAAACTATGAGGCGGACGGCGATACGTAACAGGCCAAAGCGTACAATATCTGCTAGTAGTGGGCTTAAGCGGTTACATTATTAGTATAGGTTTAATTTTTCTTTAAAAGGTTTGTGACTTTACCTATAAAAGAAAATGTTTGTGACGTTGATTTACTACTCGTTCTTAGTTGTTGAGGTTTCATTTCACTTAGTTTCGATCTTCCTGTTGTCTGATTCGTGCTGATGCGATCAATTTATGTTTAAATCAGAATAGATGATTATGAGAAAGATTAGTTGATGGTGAAAGCATTTGGAGCATTCTGAATCCATTCACCTTGGTGTCATTATTTTCTGAGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGGTAATTTGCCTGTTTATTTTTAATGCATTCAATTAAGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

mRNA sequence

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

Coding sequence (CDS)

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

Protein sequence

MRTKPPTIPSPLPFLFSLLRLCQSQEQQFLLHSANRRPIAIFFSISTRHCICKYTALLFPLPDSFPAQLFSSFSFHQELIELLPLLFDSGTAMDDGRHHENGRHKLDYFRGSPSPMLFRKSNELETMYAVAYGAPSSCKGTERLGHE
Homology
[Close]
BLAST of Carg19378-RA vs. NCBI nr
Match: XP_022952752.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita moschata] >XP_022952753.1 protein BASIC PENTACYSTEINE4-like [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378-RA vs. NCBI nr
Match: XP_022969351.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969352.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969353.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969354.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378-RA vs. NCBI nr
Match: XP_023554072.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554073.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554074.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554075.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378-RA vs. NCBI nr
Match: XP_008448032.1 (PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448033.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448034.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448035.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448036.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448038.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448039.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378-RA vs. NCBI nr
Match: XP_022136237.1 (protein BASIC PENTACYSTEINE4 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378-RA vs. TrEMBL
Match: tr|A0A1S3BIS4|A0A1S3BIS4_CUCME (protein BASIC PENTACYSTEINE4-like OS=Cucumis melo OX=3656 GN=LOC103490336 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

The following BLAST results are available for this feature:
BLAST of Carg19378-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952752.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita moschata] >XP_022952753.1 protein B... [more]
XP_022969351.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969352.1 protein BAS... [more]
XP_023554072.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554073.1 p... [more]
XP_008448032.16.9e-0495.65PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448033.1 PRED... [more]
XP_022136237.16.9e-0495.65protein BASIC PENTACYSTEINE4 [Momordica charantia][more]
BLAST of Carg19378-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19378-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19378-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BIS4|A0A1S3BIS4_CUCME4.6e-0495.65protein BASIC PENTACYSTEINE4-like OS=Cucumis melo OX=3656 GN=LOC103490336 PE=4 S... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg19378Carg19378gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg19378-RACarg19378-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg19378-RA.CDS.4Carg19378-RA.CDS.4CDS
Carg19378-RA.CDS.3Carg19378-RA.CDS.3CDS
Carg19378-RA.CDS.2Carg19378-RA.CDS.2CDS
Carg19378-RA.CDS.1Carg19378-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg19378-RA.exon.4Carg19378-RA.exon.4exon
Carg19378-RA.exon.3Carg19378-RA.exon.3exon
Carg19378-RA.exon.2Carg19378-RA.exon.2exon
Carg19378-RA.exon.1Carg19378-RA.exon.1exon