Carg19378 (gene) Silver-seed gourd

Overview
NameCarg19378
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein BASIC PENTACYSTEINE4-like
LocationCucurbita_argyrosperma_scaffold_096 : 259974 .. 262139 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTTCTCCGTTTTCAAGTTTCTCCTCCGAAACCCTAGCCTTCTGTCACTCCTACCTTACGAACATTCGTTTTTCTGGTTCATGTGCCTAGTTTTCTCCCATTGATGCCGTTACTTCATTTGATTTTCTTTCAGCTGTTAGGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGTTTCTCTTCTTTCCTTTGAACAAACTTCCGTTTTGAACATTCGATACTGTTGTTTAACGACACATTAGGATTCGTATGACTTGTTTGATGTAAATTTTGCTGTCTTTGTGAGTTTACTGCGAAGCAAATGGCGATAAATACTGATGTGCGAGTGTTCGTGTCAATTTCATTACACTATACGCACTTTTTTTTTTTTTTTTTTTTTTGGTGGATTTTTAAGCAGAAGCTGAGTGAGTAACGTATGACACTATTTCCAGTTTAGCTTGTGTTGTAAGTCTTATGCTCAGAGCTCTGATGAAATTGTTTGTACGTATCGTTATACATGTATTTGTAAAGATATAATTGAATGTTCTTCTCATATTTCATATTTTAATTTTGTTCCTTATTTGGAAAACCATGCCATTGTAGGCTTTTGTTTTGCGCTGAAATGTTTAAATTGAGCCCCCATGGAATGCCAGATGTGAGCATGCTGTAACTTCCCGTTATCCAGAACTTATGATCCTAAAATTGTCAATGTAAAGAGAGTATCGTTTTTAATTATTTCAGTTGATGTAGCTTAACGAATTCATCGTGGTGTGGGACAGAGTCCGATCTTCTTTATGTGTTTACAGTAGTTTTATCATTTGTCTGCACATTGTCCAAACTATAGTCTCCCTTTGGTATGGGTTTATCTGCCAGATCCCCACGTCGGTTGGAGAGGGGAACGAAGCATTCCTTATGAGGGTGTGGAAACCTCTCCCTAGCAGGCGTGTTTTATAACCGTGAGACTGACGGCGATACGTAACGGGCCAAAGAAGACAATATTTGCTAGTAGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAAACTCCAGGCAGTGTGCTAGCAAGAACGCTAGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATTTGTTGGAGAGGGGAACGAAGCATTCCTTACAAAGGTGCGGAAACCTCTCCCTAGCAGGCGCGTTTTATAACCGTGAAACTGACGGCGATACGTAACGGGCCATAACAGACAATATCTACTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGATCCAGACACCGAGCAGTGTGCCAGCGAGGACGCTAGGTCTCCAAGAGGGTGGATTGTGAGATCCCACATCTGTTGGAGAGGGGAATGAAGCATTTATTATAAGGGTGTGAAAACCTCTCTCTATCATACACGTTTTAAAACTATGAGGCGGACGGCGATACGTAACAGGCCAAAGCGTACAATATCTGCTAGTAGTGGGCTTAAGCGGTTACATTATTAGTATAGGTTTAATTTTTCTTTAAAAGGTTTGTGACTTTACCTATAAAAGAAAATGTTTGTGACGTTGATTTACTACTCGTTCTTAGTTGTTGAGGTTTCATTTCACTTAGTTTCGATCTTCCTGTTGTCTGATTCGTGCTGATGCGATCAATTTATGTTTAAATCAGAATAGATGATTATGAGAAAGATTAGTTGATGGTGAAAGCATTTGGAGCATTCTGAATCCATTCACCTTGGTGTCATTATTTTCTGAGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGGTAATTTGCCTGTTTATTTTTAATGCATTCAATTAAGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

mRNA sequence

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

Coding sequence (CDS)

ATGAGAACGAAGCCACCCACCATTCCTTCACCACTTCCCTTTCTGTTCTCTCTTCTCCGACTGTGTCAATCACAAGAACAGCAATTTCTTCTTCATTCTGCAAATCGCCGTCCGATCGCCATTTTCTTCTCCATTTCCACTCGCCATTGCATCTGTAAGTATACCGCTCTTCTATTTCCACTTCCTGATTCCTTTCCTGCTCAGTTGTTTTCTTCGTTCTCTTTCCATCAGGAGTTGATCGAGCTGCTTCCGCTGCTGTTTGATTCCGGTACGGCTATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGCTAGACTACTTCAGAGGGAGCCCCTCGCCGATGTTGTTTCGAAAATCGAATGAATTGGAAACGATGTATGCAGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAA

Protein sequence

MRTKPPTIPSPLPFLFSLLRLCQSQEQQFLLHSANRRPIAIFFSISTRHCICKYTALLFPLPDSFPAQLFSSFSFHQELIELLPLLFDSGTAMDDGRHHENGRHKLDYFRGSPSPMLFRKSNELETMYAVAYGAPSSCKGTERLGHE
Homology
[Close]
BLAST of Carg19378 vs. NCBI nr
Match: XP_022952752.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita moschata] >XP_022952753.1 protein BASIC PENTACYSTEINE4-like [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378 vs. NCBI nr
Match: XP_022969351.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969352.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969353.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969354.1 protein BASIC PENTACYSTEINE4-like [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378 vs. NCBI nr
Match: XP_023554072.1 (protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554073.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554074.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554075.1 protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGRHHENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRHHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378 vs. NCBI nr
Match: XP_008448032.1 (PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448033.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448034.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448035.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448036.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448038.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448039.1 PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378 vs. NCBI nr
Match: XP_022136237.1 (protein BASIC PENTACYSTEINE4 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

[Close]
BLAST of Carg19378 vs. TrEMBL
Match: tr|A0A1S3BIS4|A0A1S3BIS4_CUCME (protein BASIC PENTACYSTEINE4-like OS=Cucumis melo OX=3656 GN=LOC103490336 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 93  MDDGRHHENGRHKLDYFRGSPSP 116
           MDDGR HENGRHKLDYFRGSPSP
Sbjct: 1   MDDGRQHENGRHKLDYFRGSPSP 23

The following BLAST results are available for this feature:
BLAST of Carg19378 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952752.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita moschata] >XP_022952753.1 protein B... [more]
XP_022969351.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita maxima] >XP_022969352.1 protein BAS... [more]
XP_023554072.18.2e-05100.00protein BASIC PENTACYSTEINE4-like [Cucurbita pepo subsp. pepo] >XP_023554073.1 p... [more]
XP_008448032.16.9e-0495.65PREDICTED: protein BASIC PENTACYSTEINE4-like [Cucumis melo] >XP_008448033.1 PRED... [more]
XP_022136237.16.9e-0495.65protein BASIC PENTACYSTEINE4 [Momordica charantia][more]
BLAST of Carg19378 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19378 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19378 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BIS4|A0A1S3BIS4_CUCME4.6e-0495.65protein BASIC PENTACYSTEINE4-like OS=Cucumis melo OX=3656 GN=LOC103490336 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19378-RACarg19378-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19378CmoCh19G007090Cucurbita moschata (Rifu)carcmoB0433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19378Silver-seed gourdcarcarB342
Carg19378Cucumber (Gy14) v2carcgybB0325
Carg19378Cucumber (Gy14) v2carcgybB0326
Carg19378Cucumber (Gy14) v1carcgyB0373
Carg19378Cucurbita maxima (Rimu)carcmaB0438
Carg19378Cucurbita maxima (Rimu)carcmaB0440
Carg19378Cucurbita maxima (Rimu)carcmaB0441
Carg19378Cucurbita maxima (Rimu)carcmaB0442
Carg19378Cucurbita maxima (Rimu)carcmaB0443
Carg19378Cucurbita moschata (Rifu)carcmoB0431
Carg19378Cucurbita moschata (Rifu)carcmoB0434
Carg19378Cucurbita moschata (Rifu)carcmoB0436
Carg19378Cucurbita pepo (Zucchini)carcpeB0436
Carg19378Cucurbita pepo (Zucchini)carcpeB0437
Carg19378Cucurbita pepo (Zucchini)carcpeB0438
Carg19378Cucurbita pepo (Zucchini)carcpeB0440
Carg19378Wild cucumber (PI 183967)carcpiB0347
Carg19378Wild cucumber (PI 183967)carcpiB0348
Carg19378Cucumber (Chinese Long) v2carcuB0341
Carg19378Cucumber (Chinese Long) v2carcuB0342
Carg19378Cucumber (Chinese Long) v3carcucB0346
Carg19378Cucumber (Chinese Long) v3carcucB0347
Carg19378Bottle gourd (USVL1VR-Ls)carlsiB288
Carg19378Bottle gourd (USVL1VR-Ls)carlsiB290
Carg19378Melon (DHL92) v3.5.1carmeB0321
Carg19378Melon (DHL92) v3.6.1carmedB0330
Carg19378Watermelon (Charleston Gray)carwcgB0307
Carg19378Watermelon (Charleston Gray)carwcgB0308
Carg19378Watermelon (97103) v1carwmB0305
Carg19378Watermelon (97103) v1carwmB0307
Carg19378Watermelon (97103) v2carwmbB0323
Carg19378Watermelon (97103) v2carwmbB0324
Carg19378Wax gourdcarwgoB0397
Carg19378Wax gourdcarwgoB0401