Carg19362-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19362-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_096 : 120707 .. 123057 (+)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGGTACGCTACTATGGTCCATTCTGCTCCGTTTGCTTGGTATTGGGTGTAATGTTCATCTTTCTTTTGAATGTTGGAAAGAAACCGATGCCATTCAGCTTGGCACGTCGACGACCAAATCTTTATAGCCCATGACAAGTCTTTCCTTACATTGCAAGTTTGAACTATTTGTTACTGATGATAATCCATGTTTTTGGATGTCATGATGCTGATTAGTCCACAAATTTGCAAACTTTGCTCATGCAATGTCGATTGATGATTCAATTGAGGATAAATCTCGCGTAACAGCAAAAGCTCACCGCTAGCAGATATTGTATCCTCTTTGGGCTTTTTCTTTCGGGCTTCCTCTCAAAGCTTTTAAAACGCGTTTGCTAGGGAGAGGTATCCACATCGGTTGGGAGGGAGAACGAAGTATTCTTTATAACAATGTAGAAATCTCTCCTTAACAAACGCGTTTTAAATACTTTGAGGGGAAGCTCGAAAGAGAAAGCCCAAAGAGGACAATATTTACTAGCAGTAGGCTTGGACCGTTACACCTCGAGATTATTTGAGTCACCGACGTCGTCGTGTTTTAGGATATAGCTAGTGCAGGTGATGGATTGCTCCCTTCCAAACTTGTATACGAGACAGGTGAATAATTGTTGTCAAACTGGTCGGTTGTTTAAGGTGCTGTGTGTCTGAGTCAGTTTCAGTGGCCACATAGCTGATGTGCCCTTGTCGTAGCTGCTTTGTTTGATTCAGCTTTGATCAACAGGCATCTTCTCTTCCCTTCTCTTCAGATTCATTATTATAAACTTCCATTTAGAATGTGCCTGCATGCTACCTGCCAATGTCTGTACTGTTCAAAATAGGCCACATCACTTCTAGCTTGATATTGTTGTCTGATTCTAGGGACTTTTGTTCTTTCCTTAATCAAATTCTTTGTAGTATTCTTTTTCTAGCATTGTCATGATTGAAATTTTGTGAGAATTAACAGATCAATTGCAAATAAATTATTGAGTGGTCATATGCAAGATCATAGGTTTCAAGAAGAGGCCCAAGAAATTAGGTGATGGGTACATGTTGTAGGATGATTTTGGTACCACAATTAATTGAACTGATTGTGCGTGCCCACTTATATTAATATGGTCTTAAGTAGCAAATTTAAGTCTTTATTTCCTATTCGTCATTATGTTTATAAGAAGGAAGCTATGATGATTACTTAGGGCAGCCAAGCATGACTTATATTTGTTTAGCTCAACCGTTGGATGTCTAAGCCCTACAAACATAGTAGTAGCACATTATCAACGAGTCAATGACACATTTTTTACATAAGTTCGATGTAAGATGCAATGCTCATCTACTATATGGGGCTAGGCGTAACACGTTTTTCTTTTGTTTTCTCCTATATATATAGTCTATTTTAAGTGTTACTTGCCACTAAACTAAGTGATTTTGTGAGATCCCACATCGATTGGAGGGGGATGTAAGAGTGAAAACTTCTCTGTAGCAGACGTGTTCTAAAAACCTTGAAAGGAAGTTCGAAAGAGAAAGTCTAAAGATGATATTGGCTTGGGCCATAACAAATGGTATCAGAAGCAGGTTTTGGGCGATGTGCCAGCAAGGAGGTTGACCCCCGAATGGGAGTGGATACGAGGTCTTGTGTTAGCAAGGACGTTGGGCCGCGACAGAGGGTATATTGGGGGTCCCACATTGATTGGAGAGGGAAATGAGTGCCAGCGAATACAACCTGGAAGGGGTGGATCTATGGCCTCGTAGAAGACAATTTTTGCTAGTTAATCAGACAACAAGAATTTTGTTCGAATTAAATTATATCAGTGCAACACAAAGTAGTTTCATGTTGTAGTTCAATAGCTAAAATGTCAATTAATTTCAATATCTTTTAACACATAGCTCAATTGATGAAAGTTGTAATTTGATTCACTTCAAGGCTTGAAGGAAGGAGGCTTTCTTATCAGAGTGGCCTGCTCGAACGCATAAGCAACCTCAATCAGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

mRNA sequence

ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

Coding sequence (CDS)

ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

Protein sequence

MSFLELSFTGITRVGSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASNRSSSTTFSNPSFVSFAKFNRAAFCTSPIPFVASAARKISWPKTSSSSCTTMIRIDSE

Homology

[Close]

BLAST of Carg19362-RA vs. NCBI nr
Match: GAY66535.1 (hypothetical protein CUMW_249450 [Citrus unshiu])

HSP 1 Score: 66.2 bits (160), Expect = 8.4e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASN 63
          GSEPFNPPK +P G+P P+Y AGTLIPGNPP A +V  A PGVT AS+
Sbjct: 4  GSEPFNPPKQMPKGSPSPAYTAGTLIPGNPPTARSVETAYPGVTNASS 51

[Close]

BLAST of Carg19362-RA vs. NCBI nr
Match: OAY22027.1 (hypothetical protein MANES_S036000 [Manihot esculenta])

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTV 51
          GS PFNPPK +P G P  SYPAGT+IPG PPIA TV
Sbjct: 9  GSVPFNPPKQMPKGNPVVSYPAGTVIPGYPPIAKTV 44

[Close]

BLAST of Carg19362-RA vs. TrEMBL
Match: tr|A0A2H5QQI3|A0A2H5QQI3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_249450 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASN 63
          GSEPFNPPK +P G+P P+Y AGTLIPGNPP A +V  A PGVT AS+
Sbjct: 4  GSEPFNPPKQMPKGSPSPAYTAGTLIPGNPPTARSVETAYPGVTNASS 51

[Close]

BLAST of Carg19362-RA vs. TrEMBL
Match: tr|A0A199UBL0|A0A199UBL0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S036000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTV 51
          GS PFNPPK +P G P  SYPAGT+IPG PPIA TV
Sbjct: 9  GSVPFNPPKQMPKGNPVVSYPAGTVIPGYPPIAKTV 44

The following BLAST results are available for this feature:

BLAST of Carg19362-RA vs. NCBI nr


Match Name	E-value	Identity	Description
GAY66535.1	8.4e-08	68.75	hypothetical protein CUMW_249450 [Citrus unshiu]	[more]
OAY22027.1	5.6e-04	72.22	hypothetical protein MANES_S036000 [Manihot esculenta]	[more]

BLAST of Carg19362-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19362-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19362-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2H5QQI3\|A0A2H5QQI3_CITUN	5.5e-08	68.75	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_249450 PE=4 SV=1	[more]
tr\|A0A199UBL0\|A0A199UBL0_MANES	3.7e-04	72.22	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S036000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19362	Carg19362	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19362-RA.exon.1	Carg19362-RA.exon.1	exon
Carg19362-RA.exon.2	Carg19362-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19362-RA.CDS.1	Carg19362-RA.CDS.1	CDS
Carg19362-RA.CDS.2	Carg19362-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19362-RA	Carg19362-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..38