Carg19362 (gene) Silver-seed gourd

Overview
NameCarg19362
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_096 : 120707 .. 123057 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGGTACGCTACTATGGTCCATTCTGCTCCGTTTGCTTGGTATTGGGTGTAATGTTCATCTTTCTTTTGAATGTTGGAAAGAAACCGATGCCATTCAGCTTGGCACGTCGACGACCAAATCTTTATAGCCCATGACAAGTCTTTCCTTACATTGCAAGTTTGAACTATTTGTTACTGATGATAATCCATGTTTTTGGATGTCATGATGCTGATTAGTCCACAAATTTGCAAACTTTGCTCATGCAATGTCGATTGATGATTCAATTGAGGATAAATCTCGCGTAACAGCAAAAGCTCACCGCTAGCAGATATTGTATCCTCTTTGGGCTTTTTCTTTCGGGCTTCCTCTCAAAGCTTTTAAAACGCGTTTGCTAGGGAGAGGTATCCACATCGGTTGGGAGGGAGAACGAAGTATTCTTTATAACAATGTAGAAATCTCTCCTTAACAAACGCGTTTTAAATACTTTGAGGGGAAGCTCGAAAGAGAAAGCCCAAAGAGGACAATATTTACTAGCAGTAGGCTTGGACCGTTACACCTCGAGATTATTTGAGTCACCGACGTCGTCGTGTTTTAGGATATAGCTAGTGCAGGTGATGGATTGCTCCCTTCCAAACTTGTATACGAGACAGGTGAATAATTGTTGTCAAACTGGTCGGTTGTTTAAGGTGCTGTGTGTCTGAGTCAGTTTCAGTGGCCACATAGCTGATGTGCCCTTGTCGTAGCTGCTTTGTTTGATTCAGCTTTGATCAACAGGCATCTTCTCTTCCCTTCTCTTCAGATTCATTATTATAAACTTCCATTTAGAATGTGCCTGCATGCTACCTGCCAATGTCTGTACTGTTCAAAATAGGCCACATCACTTCTAGCTTGATATTGTTGTCTGATTCTAGGGACTTTTGTTCTTTCCTTAATCAAATTCTTTGTAGTATTCTTTTTCTAGCATTGTCATGATTGAAATTTTGTGAGAATTAACAGATCAATTGCAAATAAATTATTGAGTGGTCATATGCAAGATCATAGGTTTCAAGAAGAGGCCCAAGAAATTAGGTGATGGGTACATGTTGTAGGATGATTTTGGTACCACAATTAATTGAACTGATTGTGCGTGCCCACTTATATTAATATGGTCTTAAGTAGCAAATTTAAGTCTTTATTTCCTATTCGTCATTATGTTTATAAGAAGGAAGCTATGATGATTACTTAGGGCAGCCAAGCATGACTTATATTTGTTTAGCTCAACCGTTGGATGTCTAAGCCCTACAAACATAGTAGTAGCACATTATCAACGAGTCAATGACACATTTTTTACATAAGTTCGATGTAAGATGCAATGCTCATCTACTATATGGGGCTAGGCGTAACACGTTTTTCTTTTGTTTTCTCCTATATATATAGTCTATTTTAAGTGTTACTTGCCACTAAACTAAGTGATTTTGTGAGATCCCACATCGATTGGAGGGGGATGTAAGAGTGAAAACTTCTCTGTAGCAGACGTGTTCTAAAAACCTTGAAAGGAAGTTCGAAAGAGAAAGTCTAAAGATGATATTGGCTTGGGCCATAACAAATGGTATCAGAAGCAGGTTTTGGGCGATGTGCCAGCAAGGAGGTTGACCCCCGAATGGGAGTGGATACGAGGTCTTGTGTTAGCAAGGACGTTGGGCCGCGACAGAGGGTATATTGGGGGTCCCACATTGATTGGAGAGGGAAATGAGTGCCAGCGAATACAACCTGGAAGGGGTGGATCTATGGCCTCGTAGAAGACAATTTTTGCTAGTTAATCAGACAACAAGAATTTTGTTCGAATTAAATTATATCAGTGCAACACAAAGTAGTTTCATGTTGTAGTTCAATAGCTAAAATGTCAATTAATTTCAATATCTTTTAACACATAGCTCAATTGATGAAAGTTGTAATTTGATTCACTTCAAGGCTTGAAGGAAGGAGGCTTTCTTATCAGAGTGGCCTGCTCGAACGCATAAGCAACCTCAATCAGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

mRNA sequence

ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

Coding sequence (CDS)

ATGTCTTTTCTGGAGTTGAGTTTCACTGGCATCACACGCGTCGGCTCTGAACCCTTCAACCCTCCAAAGTTAATCCCAAATGGAACTCCTCCGCCGTCGTATCCCGCCGGAACATTGATTCCCGGAAATCCCCCAATTGCAAGCACCGTAGCTATGGCGGGACCTGGCGTCACCACCGCATCCAATCGCTCCTCCTCCACCACTTTCTCAAACCCATCCTTTGTCAGCTTCGCCAAGTTCAACAGAGCCGCCTTCTGCACGTCGCCGATCCCGTTTGTGGCTTCGGCCGCGAGAAAAATTTCCTGGCCGAAAACGTCGAGCAGTTCCTGCACAACCATGATTCGAATCGATTCCGAATGA

Protein sequence

MSFLELSFTGITRVGSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASNRSSSTTFSNPSFVSFAKFNRAAFCTSPIPFVASAARKISWPKTSSSSCTTMIRIDSE
Homology
[Close]
BLAST of Carg19362 vs. NCBI nr
Match: GAY66535.1 (hypothetical protein CUMW_249450 [Citrus unshiu])

HSP 1 Score: 66.2 bits (160), Expect = 8.4e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASN 63
          GSEPFNPPK +P G+P P+Y AGTLIPGNPP A +V  A PGVT AS+
Sbjct: 4  GSEPFNPPKQMPKGSPSPAYTAGTLIPGNPPTARSVETAYPGVTNASS 51

[Close]
BLAST of Carg19362 vs. NCBI nr
Match: OAY22027.1 (hypothetical protein MANES_S036000 [Manihot esculenta])

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTV 51
          GS PFNPPK +P G P  SYPAGT+IPG PPIA TV
Sbjct: 9  GSVPFNPPKQMPKGNPVVSYPAGTVIPGYPPIAKTV 44

[Close]
BLAST of Carg19362 vs. TrEMBL
Match: tr|A0A2H5QQI3|A0A2H5QQI3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_249450 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-08
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTVAMAGPGVTTASN 63
          GSEPFNPPK +P G+P P+Y AGTLIPGNPP A +V  A PGVT AS+
Sbjct: 4  GSEPFNPPKQMPKGSPSPAYTAGTLIPGNPPTARSVETAYPGVTNASS 51

[Close]
BLAST of Carg19362 vs. TrEMBL
Match: tr|A0A199UBL0|A0A199UBL0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S036000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 15 GSEPFNPPKLIPNGTPPPSYPAGTLIPGNPPIASTV 51
          GS PFNPPK +P G P  SYPAGT+IPG PPIA TV
Sbjct: 9  GSVPFNPPKQMPKGNPVVSYPAGTVIPGYPPIAKTV 44

The following BLAST results are available for this feature:
BLAST of Carg19362 vs. NCBI nr
Match NameE-valueIdentityDescription
GAY66535.18.4e-0868.75hypothetical protein CUMW_249450 [Citrus unshiu][more]
OAY22027.15.6e-0472.22hypothetical protein MANES_S036000 [Manihot esculenta][more]
BLAST of Carg19362 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19362 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19362 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2H5QQI3|A0A2H5QQI3_CITUN5.5e-0868.75Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_249450 PE=4 SV=1[more]
tr|A0A199UBL0|A0A199UBL0_MANES3.7e-0472.22Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S036000 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19362-RACarg19362-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..38

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19362Lsi11G011860Bottle gourd (USVL1VR-Ls)carlsiB290
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19362Wax gourdcarwgoB0397
Carg19362Wax gourdcarwgoB0400
Carg19362Silver-seed gourdcarcarB342
Carg19362Silver-seed gourdcarcarB343
Carg19362Cucumber (Gy14) v2carcgybB0325
Carg19362Cucumber (Gy14) v2carcgybB0326
Carg19362Cucumber (Gy14) v1carcgyB0373
Carg19362Cucurbita maxima (Rimu)carcmaB0439
Carg19362Cucurbita maxima (Rimu)carcmaB0440
Carg19362Cucurbita maxima (Rimu)carcmaB0441
Carg19362Cucurbita maxima (Rimu)carcmaB0442
Carg19362Cucurbita maxima (Rimu)carcmaB0443
Carg19362Cucurbita moschata (Rifu)carcmoB0432
Carg19362Cucurbita moschata (Rifu)carcmoB0433
Carg19362Cucurbita moschata (Rifu)carcmoB0435
Carg19362Cucurbita moschata (Rifu)carcmoB0436
Carg19362Cucurbita pepo (Zucchini)carcpeB0436
Carg19362Cucurbita pepo (Zucchini)carcpeB0437
Carg19362Cucurbita pepo (Zucchini)carcpeB0439
Carg19362Cucurbita pepo (Zucchini)carcpeB0440
Carg19362Wild cucumber (PI 183967)carcpiB0347
Carg19362Wild cucumber (PI 183967)carcpiB0348
Carg19362Cucumber (Chinese Long) v2carcuB0341
Carg19362Cucumber (Chinese Long) v2carcuB0342
Carg19362Cucumber (Chinese Long) v3carcucB0346
Carg19362Cucumber (Chinese Long) v3carcucB0347
Carg19362Bottle gourd (USVL1VR-Ls)carlsiB289
Carg19362Melon (DHL92) v3.5.1carmeB0319
Carg19362Melon (DHL92) v3.5.1carmeB0321
Carg19362Melon (DHL92) v3.6.1carmedB0328
Carg19362Melon (DHL92) v3.6.1carmedB0330
Carg19362Watermelon (Charleston Gray)carwcgB0308
Carg19362Watermelon (Charleston Gray)carwcgB0309
Carg19362Watermelon (97103) v1carwmB0305
Carg19362Watermelon (97103) v1carwmB0306
Carg19362Watermelon (97103) v2carwmbB0324
Carg19362Watermelon (97103) v2carwmbB0325