Carg19240-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19240-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone-lysine N-methyltransferase, H3 lysine-36 specific
Location	Cucurbita_argyrosperma_scaffold_099 : 411933 .. 412622 (+)
Sequence length	690

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTCCTCTCGGCCCCGGCAAGTTCTACGGCAGCAGCCTCCCTCGTCCACGCTATTACACCGATGTCAAGCTCAACAACGAGCGTATTGATCCACCTACGCCGGTCCTCGATCCGCTTCTCTCATGGGCAAACGAGGCTCATTGGTCTATGGGTGGCCTCAGCTTTAATCGCCTGAGGCTTCAAGGTCGAATCGAAGGTAATGTCCACAAACTTCGAGCCGAGCGCGAGAAGGTTGTTAAGCTGGACTCTGCGCCAAAGAGATCTAACCCTGACGACGAAGCTGCGGGCGATCGCCAATTCAAGAAGTCGAAATCTGTATCTCCACCGCCGGCGCCGATGGCAGCAAAGAGACGGCGATTTATGTCTCTGTTTGACGACGACGACGATGATGTTGGCGTGTACAAGGAAGAGACTGGGGTTGTGAAGAGGAGGTTGGTGAAGAAGCTGGGAGATGATTTTGATCGAGTGGCTGCAGAGAGTAAGGGCGATCAATTAAAGAGGGATGGAAGCTCGGAAATCAATGGGGTTTGTGAATCTGTAATGAAGATCGTTGGAGAGATTAACGATGAAAATACAAGGGGGAAAAAGGTCAACACTGAAAGAAAACGGAAGAGTGGTGGAAAAGTGGAGACTGGTTCTGTTTCTGGGACAAGAACATCTCCCAGATTGGCTAAATTGATTTGA

mRNA sequence

ATGGTGGTTCCTCTCGGCCCCGGCAAGTTCTACGGCAGCAGCCTCCCTCGTCCACGCTATTACACCGATGTCAAGCTCAACAACGAGCGTATTGATCCACCTACGCCGGTCCTCGATCCGCTTCTCTCATGGGCAAACGAGGCTCATTGGTCTATGGGTGGCCTCAGCTTTAATCGCCTGAGGCTTCAAGGTCGAATCGAAGGTAATGTCCACAAACTTCGAGCCGAGCGCGAGAAGGTTGTTAAGCTGGACTCTGCGCCAAAGAGATCTAACCCTGACGACGAAGCTGCGGGCGATCGCCAATTCAAGAAGTCGAAATCTGTATCTCCACCGCCGGCGCCGATGGCAGCAAAGAGACGGCGATTTATGTCTCTGTTTGACGACGACGACGATGATGTTGGCGTGTACAAGGAAGAGACTGGGGTTGTGAAGAGGAGGTTGGTGAAGAAGCTGGGAGATGATTTTGATCGAGTGGCTGCAGAGAGTAAGGGCGATCAATTAAAGAGGGATGGAAGCTCGGAAATCAATGGGGTTTGTGAATCTGTAATGAAGATCGTTGGAGAGATTAACGATGAAAATACAAGGGGGAAAAAGGTCAACACTGAAAGAAAACGGAAGAGTGGTGGAAAAGTGGAGACTGGTTCTGTTTCTGGGACAAGAACATCTCCCAGATTGGCTAAATTGATTTGA

Coding sequence (CDS)

ATGGTGGTTCCTCTCGGCCCCGGCAAGTTCTACGGCAGCAGCCTCCCTCGTCCACGCTATTACACCGATGTCAAGCTCAACAACGAGCGTATTGATCCACCTACGCCGGTCCTCGATCCGCTTCTCTCATGGGCAAACGAGGCTCATTGGTCTATGGGTGGCCTCAGCTTTAATCGCCTGAGGCTTCAAGGTCGAATCGAAGGTAATGTCCACAAACTTCGAGCCGAGCGCGAGAAGGTTGTTAAGCTGGACTCTGCGCCAAAGAGATCTAACCCTGACGACGAAGCTGCGGGCGATCGCCAATTCAAGAAGTCGAAATCTGTATCTCCACCGCCGGCGCCGATGGCAGCAAAGAGACGGCGATTTATGTCTCTGTTTGACGACGACGACGATGATGTTGGCGTGTACAAGGAAGAGACTGGGGTTGTGAAGAGGAGGTTGGTGAAGAAGCTGGGAGATGATTTTGATCGAGTGGCTGCAGAGAGTAAGGGCGATCAATTAAAGAGGGATGGAAGCTCGGAAATCAATGGGGTTTGTGAATCTGTAATGAAGATCGTTGGAGAGATTAACGATGAAAATACAAGGGGGAAAAAGGTCAACACTGAAAGAAAACGGAAGAGTGGTGGAAAAGTGGAGACTGGTTCTGTTTCTGGGACAAGAACATCTCCCAGATTGGCTAAATTGATTTGA

Protein sequence

MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRLRLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDEAAGDRQFKKSKSVSPPPAPMAAKRRRFMSLFDDDDDDVGVYKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVCESVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAKLI

Homology

[Close]

BLAST of Carg19240-RA vs. NCBI nr
Match: XP_023554607.1 (uncharacterized protein LOC111811804 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 222/229 (96.94%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVCE 180
           XXXXXXXXXXXXXXXX  ETGVVKRRLVKKLGDDFDRVAAESKG+QLKRD SSEINGVCE
Sbjct: 121 XXXXXXXXXXXXXXXXXXETGVVKRRLVKKLGDDFDRVAAESKGNQLKRDRSSEINGVCE 180

Query: 181 SVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAKLI 230
           SVMKIV EINDENTRG+KVNTERKRKSGG+VETGSVSGTRTSPRLAKLI
Sbjct: 181 SVMKIVEEINDENTRGEKVNTERKRKSGGRVETGSVSGTRTSPRLAKLI 229

[Close]

BLAST of Carg19240-RA vs. NCBI nr
Match: XP_022952444.1 (uncharacterized protein LOC111455131 [Cucurbita moschata])

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 220/229 (96.07%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYYTD+KLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYTDIKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLRAERE+VVKLDSAP+RSNP  XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVHKLRAERERVVKLDSAPRRSNPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVCE 180
           XXXXXXXXXXXXXXXX  ETGVVKRRLVKKLGDDFDRVAAESKGDQLKRD SSEINGVCE
Sbjct: 121 XXXXXXXXXXXXXXXXXXETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDRSSEINGVCE 180

Query: 181 SVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAKLI 230
           SVMKIVGEINDENTRG+KVNTERKRKSGGKVETGSVSGTRTSPRLAKLI
Sbjct: 181 SVMKIVGEINDENTRGEKVNTERKRKSGGKVETGSVSGTRTSPRLAKLI 229

[Close]

BLAST of Carg19240-RA vs. NCBI nr
Match: XP_022969248.1 (uncharacterized protein LOC111468305 [Cucurbita maxima])

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 218/229 (95.20%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYY DVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYIDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLRAEREKVVKLDSAPKRSN   XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVHKLRAEREKVVKLDSAPKRSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVCE 180
           XXXXXXXXXXXXXXXX   TGVVKRRLVKKLGDDFDRVAAESKG+QLKRD SSEINGVCE
Sbjct: 121 XXXXXXXXXXXXXXXXXXXTGVVKRRLVKKLGDDFDRVAAESKGNQLKRDKSSEINGVCE 180

Query: 181 SVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAKLI 230
           SVMKIV EINDENTRGKKVNTERKRKS GKVETGSVSGTRTSPRLAKLI
Sbjct: 181 SVMKIVEEINDENTRGKKVNTERKRKSSGKVETGSVSGTRTSPRLAKLI 229

[Close]

BLAST of Carg19240-RA vs. NCBI nr
Match: XP_008455314.1 (PREDICTED: uncharacterized protein LOC103495510 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71
Identity = 170/235 (72.34%), Postives = 182/235 (77.45%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYYTDVKLN+ER+DPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNDERVDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-------KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLR EREKV        KLDSAPKRS+P D                  X
Sbjct: 61  RLQGRIEGNVHKLRVEREKVAKKKLKAEKLDSAPKRSDP-DAGADAHRQLKKARSVTPPX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLK--RDG 180
           XXXXXXXXXXX            KEE GVVKRRLVKKLGDDFDRVAAESK +QLK  +D 
Sbjct: 121 XXXXXXXXXXXVLFEDEDDVGMDKEEIGVVKRRLVKKLGDDFDRVAAESKRNQLKGLKDR 180

Query: 181 SSEINGVCESVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLA 227
           SSEIN V ESVMKIV EIN+ENT+ K++N E+K K+ GKVE+ SVSGTRTSPRLA
Sbjct: 181 SSEINEVNESVMKIVEEINNENTKVKEINIEKKGKTVGKVESVSVSGTRTSPRLA 234

[Close]

BLAST of Carg19240-RA vs. NCBI nr
Match: XP_004136827.1 (PREDICTED: uncharacterized protein LOC101207471 [Cucumis sativus] >KGN43619.1 hypothetical protein Csa_7G048030 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 2.7e-71
Identity = 157/235 (66.81%), Postives = 168/235 (71.49%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYY+DVK N+ER+DPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYSDVKFNDERVDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-------KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLR EREKV        KLDSAPKRS+P D                   
Sbjct: 61  RLQGRIEGNVHKLRTEREKVAKKKLKAQKLDSAPKRSDP-DAGADAHRQLKKARSVTPPP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLK--RDG 180
                                  KEE GVVKRRLVKKLGDDFDRVAAESK  QLK  +D 
Sbjct: 121 APIATKRRRLMVLFEDEDDIGMEKEEIGVVKRRLVKKLGDDFDRVAAESKRSQLKGLKDR 180

Query: 181 SSEINGVCESVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLA 227
           SSEINGV ESVMKIV EIN+ENT+ KK N ERK K+GG VE+ SVSG+R+SPRLA
Sbjct: 181 SSEINGVNESVMKIVEEINNENTKVKKTNIERKGKTGGNVESVSVSGSRSSPRLA 234

[Close]

BLAST of Carg19240-RA vs. TAIR10
Match: AT4G28310.1 (unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-29
Identity = 107/227 (47.14%), Postives = 130/227 (57.27%), Query Frame = 0


Query: 3   VPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRLRL 62
           + + P  FYG+ LPRPR++ + K N+ R+DPP  VLDPLLSWA +AHWSMGGL+F RLRL
Sbjct: 9   IAIRPVSFYGNGLPRPRFFDNPKFNDYRVDPPLSVLDPLLSWARDAHWSMGGLNFTRLRL 68

Query: 63  QGRIEGNVHKLRAEREK--VVKLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           QGRIEGNV+KLRA+ EK   VKL+S  K               XXXXXXXXXXXXXXXXX
Sbjct: 69  QGRIEGNVNKLRAQLEKSTPVKLESGRK---------------XXXXXXXXXXXXXXXXX 128

Query: 123 XXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVCE 182
           XXX              E+ GVV  R+ +KL DDFDRVA ESK                 
Sbjct: 129 XXXYLDLNDSDDEEVGSEDEGVV--RIRRKLSDDFDRVAEESK----------------- 188

Query: 183 SVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAK 228
              K+V E N ++ + + V  +              S TR+SPRLAK
Sbjct: 189 --TKLV-EANKKSIKSEFVEKKXXXXXXXXXXXXKTSSTRSSPRLAK 198

[Close]

BLAST of Carg19240-RA vs. TAIR10
Match: AT1G52270.1 (unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-07
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 7  PGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWA 46
          P  FY + LPRPR++ + + N+ R+D P  VLDPLLSWA
Sbjct: 13 PVAFYRNGLPRPRFFDNHRFNSYRVDTPLSVLDPLLSWA 51

[Close]

BLAST of Carg19240-RA vs. TrEMBL
Match: tr|A0A1S3C0M4|A0A1S3C0M4_CUCME (uncharacterized protein LOC103495510 OS=Cucumis melo OX=3656 GN=LOC103495510 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.4e-71
Identity = 170/235 (72.34%), Postives = 182/235 (77.45%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYYTDVKLN+ER+DPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNDERVDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-------KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLR EREKV        KLDSAPKRS+P D                  X
Sbjct: 61  RLQGRIEGNVHKLRVEREKVAKKKLKAEKLDSAPKRSDP-DAGADAHRQLKKARSVTPPX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLK--RDG 180
           XXXXXXXXXXX            KEE GVVKRRLVKKLGDDFDRVAAESK +QLK  +D 
Sbjct: 121 XXXXXXXXXXXVLFEDEDDVGMDKEEIGVVKRRLVKKLGDDFDRVAAESKRNQLKGLKDR 180

Query: 181 SSEINGVCESVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLA 227
           SSEIN V ESVMKIV EIN+ENT+ K++N E+K K+ GKVE+ SVSGTRTSPRLA
Sbjct: 181 SSEINEVNESVMKIVEEINNENTKVKEINIEKKGKTVGKVESVSVSGTRTSPRLA 234

[Close]

BLAST of Carg19240-RA vs. TrEMBL
Match: tr|A0A0A0K3S4|A0A0A0K3S4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G048030 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.8e-71
Identity = 157/235 (66.81%), Postives = 168/235 (71.49%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPRYY+DVK N+ER+DPPTPVLDPLLSWANEAHWSMGGLSFNRL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRYYSDVKFNDERVDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-------KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNVHKLR EREKV        KLDSAPKRS+P D                   
Sbjct: 61  RLQGRIEGNVHKLRTEREKVAKKKLKAQKLDSAPKRSDP-DAGADAHRQLKKARSVTPPP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLK--RDG 180
                                  KEE GVVKRRLVKKLGDDFDRVAAESK  QLK  +D 
Sbjct: 121 APIATKRRRLMVLFEDEDDIGMEKEEIGVVKRRLVKKLGDDFDRVAAESKRSQLKGLKDR 180

Query: 181 SSEINGVCESVMKIVGEINDENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLA 227
           SSEINGV ESVMKIV EIN+ENT+ KK N ERK K+GG VE+ SVSG+R+SPRLA
Sbjct: 181 SSEINGVNESVMKIVEEINNENTKVKKTNIERKGKTGGNVESVSVSGSRSSPRLA 234

[Close]

BLAST of Carg19240-RA vs. TrEMBL
Match: tr|A0A0D2SKK6|A0A0D2SKK6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G201200 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.6e-41
Identity = 133/232 (57.33%), Postives = 161/232 (69.40%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPR YT+ + N+ER++PP PVLDPLLSWANEAHWSMGGLSF RL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRIYTETRFNSERVNPPVPVLDPLLSWANEAHWSMGGLSFKRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNV +L+A+R+K +   D  PK++N D         XXXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVQRLKAQRDKFLNNKDPIPKKNNSD------ASFXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVC 180
           XXXXXXXXXXX      +EE  V+++  V+KLGDDF+RVA +              +G+ 
Sbjct: 121 XXXXXXXXXXXNEIVMNREEKRVLRKGAVRKLGDDFERVAKDKDSGVASGGKRGFSDGIG 180

Query: 181 ESVMKIVGEINDENTRGKKVNTER----KRKSGGKVETGSVSGTRTSPRLAK 228
             VMKIV E+N E+   KK    R     +K   +V +G+ + TR SPRLAK
Sbjct: 181 IDVMKIVEEVNVESEEIKKKXXXRIVKGLKKGTDEVRSGTGTTTRASPRLAK 226

[Close]

BLAST of Carg19240-RA vs. TrEMBL
Match: tr|A0A1U8HJU5|A0A1U8HJU5_GOSHI (uncharacterized protein LOC107886778 OS=Gossypium hirsutum OX=3635 GN=LOC107886778 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.3e-41
Identity = 133/231 (57.58%), Postives = 164/231 (71.00%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPR Y++ + N+ER+DPP PVLDPLLSWANEAHWSMGGLSF RL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRIYSETRFNSERVDPPVPVLDPLLSWANEAHWSMGGLSFKRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNV +L+A+R+K +   D  PK++N D          XXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVQRLKAQRDKFLNNKDPVPKKNNRD----ASLSPPXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVC 180
           XXXXXXXXXXXXX    +EE  V+++  V+KLGDDF+RVA +              +G+ 
Sbjct: 121 XXXXXXXXXXXXXIVMNREEKRVLRKGAVRKLGDDFERVAKDKDSGVASGGKWGFSDGIG 180

Query: 181 ESVMKIVGEINDEN---TRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAK 228
             VMKIV E+N E+    + KK   +  +K   +V++G+ + TR SPRLAK
Sbjct: 181 IDVMKIVEEVNVESGEIKKKKKRIVKGLKKGTDEVQSGTGTTTRVSPRLAK 227

[Close]

BLAST of Carg19240-RA vs. TrEMBL
Match: tr|A0A1U8JPR1|A0A1U8JPR1_GOSHI (uncharacterized protein LOC107909289 OS=Gossypium hirsutum OX=3635 GN=LOC107909289 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.8e-39
Identity = 138/231 (59.74%), Postives = 170/231 (73.59%), Query Frame = 0


Query: 1   MVVPLGPGKFYGSSLPRPRYYTDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRL 60
           MVVPLGPGKFYGSSLPRPR Y + + N+ER++PP PVLDPLLSWANEAHWSMGGLSF RL
Sbjct: 1   MVVPLGPGKFYGSSLPRPRIYNETRFNSERVNPPVPVLDPLLSWANEAHWSMGGLSFKRL 60

Query: 61  RLQGRIEGNVHKLRAEREKVV-KLDSAPKRSNPDDXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RLQGRIEGNV +L+A+R+K +   D  PK+   + XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RLQGRIEGNVQRLKAQRDKFINNKDPIPKK---NXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXKEETGVVKRRLVKKLGDDFDRVAAESKGDQLKRDGSSEINGVC 180
           XXXXXXXXXXXXX    +EE  ++++  V+KLGDDF+RVA +              +G+ 
Sbjct: 121 XXXXXXXXXXXXXIVMNREEKRILRKGAVRKLGDDFERVAKDKDSGVASGGKRGFSDGIG 180

Query: 181 ESVMKIVGEIN---DENTRGKKVNTERKRKSGGKVETGSVSGTRTSPRLAK 228
             VMKIV E+N   +E  + KK   +  +K   +V++G+ + TR SPRLAK
Sbjct: 181 IDVMKIVEEVNVESEEIKKKKKRIVKGLKKGTDEVQSGTGTTTRASPRLAK 228

The following BLAST results are available for this feature:

BLAST of Carg19240-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554607.1	3.4e-90	96.94	uncharacterized protein LOC111811804 [Cucurbita pepo subsp. pepo]	[more]
XP_022952444.1	1.3e-89	96.07	uncharacterized protein LOC111455131 [Cucurbita moschata]	[more]
XP_022969248.1	2.3e-86	95.20	uncharacterized protein LOC111468305 [Cucurbita maxima]	[more]
XP_008455314.1	2.1e-71	72.34	PREDICTED: uncharacterized protein LOC103495510 [Cucumis melo]	[more]
XP_004136827.1	2.7e-71	66.81	PREDICTED: uncharacterized protein LOC101207471 [Cucumis sativus] >KGN43619.1 hy...	[more]

BLAST of Carg19240-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28310.1	6.9e-29	47.14	unknown protein	[more]
AT1G52270.1	5.7e-07	53.85	unknown protein	[more]

BLAST of Carg19240-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19240-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0M4\|A0A1S3C0M4_CUCME	1.4e-71	72.34	uncharacterized protein LOC103495510 OS=Cucumis melo OX=3656 GN=LOC103495510 PE=...	[more]
tr\|A0A0A0K3S4\|A0A0A0K3S4_CUCSA	1.8e-71	66.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G048030 PE=4 SV=1	[more]
tr\|A0A0D2SKK6\|A0A0D2SKK6_GOSRA	5.6e-41	57.33	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G201200 PE=4 ...	[more]
tr\|A0A1U8HJU5\|A0A1U8HJU5_GOSHI	7.3e-41	57.58	uncharacterized protein LOC107886778 OS=Gossypium hirsutum OX=3635 GN=LOC1078867...	[more]
tr\|A0A1U8JPR1\|A0A1U8JPR1_GOSHI	6.8e-39	59.74	uncharacterized protein LOC107909289 OS=Gossypium hirsutum OX=3635 GN=LOC1079092...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19240	Carg19240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19240-RA.exon.1	Carg19240-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19240-RA.CDS.1	Carg19240-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19240-RA	Carg19240-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..210
None	No IPR available	PANTHER	PTHR35103	FAMILY NOT NAMED	coord: 1..227