Carg19108-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATGGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGGTTCTTGTCTTCTCTTCTCTGCTACTGCATTTTGATGTTGGCTGATATCTTGCTTGCTTTTCTAAATTCAAATAGTTTCTTTATCTAAGAACACAATAAATTCCTTTGGTGTCAATTAATGATGTCTTGACTATTTTTGAACAGTTTTCTTCTGAAAATTTCTGTATTATCTCTGTTTGCTTACATTAATATGATAGTTTTTCCTTATTCTAGATGTTAATGATAATGGACCCACACCATGTAGGTAGCATGTGTTTTTGTCTCAACTGTGATAGCAATCCAACCAGGAACAAGATTTGAGAGGCAAAACAAGTTCACAAGGCATTAAACTGTGTCAAGCTGCTCATGGTTTCTTAAGCATTAGTAGCTAATGAACGGTGGGATCCCATGTCGATTGGAGAGGGGAATGAAGTATTCCTTACAAGGGTGTGGAAACCTCTCCCTAAAAGACGTATTTTAAAATCTTGAGTGGAAGCCAGAAGGGAAAACTCATAGAGGATAATACTGCTAGTGGTGGGTTTGGGTTGTTACAAATGGTATCAGAGCCAGATACCGAGCGTTGTGTTGACGAGGACGCTAGGCCTCCAAGAAGGGTGGAGGGTGTGGAAATCACTTAAGGGTGGAAGGTGTGGAAACCACTTAAAGGTGGAGGGTGTGAAAACCTCTCCCTAACAGACAAGGGCCCTAATAGACGATGGAGGGTGTGAAAACCTCTCCCTAACAGACAAGGGCCCTAATAGACGATGGAGGGTGTGGAAGCCTCTCAAGGATGGAGGGTGTGAAAACCTCTCCCTAACAGACAAGAGCCCTAATAGACGATGGAGGGTGTGGAAGCCTCTCAGGGATGGAGGGTGTGAAAACCTCTCCCTAATATACAAGGGCCCTAATAGACGAGGGGAACAAAGTATTCCTTATAAGATTATGGAAACCTCTCCCTAACATACGCGTTTTAAAACATTGAGGAGAAACCCAAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTATGACATTTTGAATGAGCAGATTATTCAATGTCGTATCGATTTAACAAGTTTCGTTGACAATTCAATCCTATACCATTTAATGCATTGTTCATACAAACATAATCACATGCTATGTCTCCCTTTGTGATTACAATATAGAAATATGCACATATTTTGAAGTATTTATAGCTTTAATAAAGTGTGTCAAAGTCTAAGCTGTCACCATTTTCAATATCCTTTCCCTACATTCTATAAGGTATAGTTGTACCATATTAGCATGTACAGCTGAGTTTCAATTCTTTATGTTGGAAAGTATACTAACAGAATAGAAGGAGAGGTCATGGATGATTTCGAATCGGCTTCCACTAGTTTGTGTTCTAATCTTGCACCTCAAGTATCATAAAGTTGTTCTCCTTTTTGCTCGTAGGCCAGCTATTTTCGACTCAAAGTCTAAATGGTGATCATTATTAATGAGTTTTCTTTGTTGTTTGAGGACATTTTCTTTTAATCACCATCATGTTTGATCATGTGCCTTTTTCGTTCTCTTCGTAACGGGAAAAAGGCGAAAGAAAAAGGGGAGTGAGGTTGTGAGATCCCACGTCGGTTGGAGATGGGAACGAAACATTTTTTATAAGGATGTAGAAGCCTCTCCTTAGCCGTTTTAAAATCTTTGAGGAAAAACCCAATAGGAAAAGTTCAAAGAGGACAATATTTGCTAGTAATGGGCTTGAACTGTTGCAAATGGTATCAGAGTCAAACACTGGGCGGTGTGCTAGTGAGGACGCTGAGCCCCCAAAGAGGGGTGGACACCGAACGGTGTGCCAGCGGGGATACTGAGCCATGAAGAGGGGTGGACACCGAGTGGTGTGCCAACGAGGACGCTGAGCCATGAAGAGGGATGGACACCGAGTGGAATGCTAGCAAAGAGGGGTGAACACCGAGTGGTGTGCCAGCGAGGACGCTGAGCTACGAAGAGGGGTGAACACTGAGAGGTGTGTCAGCGAGTACGTTGGACCCTAAAGGAGGGTGGACTGTGAGATCCCACATCGATTGGAGAGGGGAGAGTGCCAACAACGACGCTGGGTCTTGAAGGGGGGTTGATTGTAAGATTCCACATCGGTTGGAGAAGGGAACGGAACTTTTTTTATAAGGGTGTGGAAACTTCTCTCTAGCAAACGAGTTTTAAAAACTTTGAGTAGAAACTCGGAAGAAAAAGCCCAAAAAAAGACGATTCTTTATTATCAACTGTGACTCCACAGTGTTCAACTCATTAAACTCTCTCTCTCTGATGAACAATATGCTACAGAATTTTCATGCATGAATTTCTACGAACAATCATTATTTTGTGGACCATGGACCCATTTTTGCACCGTTTCTGCTAAATTGTTGCAGCAATCTCAGAATCATGATAGTAGCAGCTATAATATAGTTCTTATGGTAATTAGATGAGTAATAGAGAAGCAACCTACTTTAAACTGATACACTTTTTGACTTGACTTATGTAGATGACTGTTTACGGTCGAGGAGTATCGGTGTTGATGCCCGGCGAAGCGATTCCAACCTACATTGCCCACCCTGTTCCTGCACCGTGCCCTCCCGAGCCCATTTTGAAGCCTCTGCATCCACATAACTTGAGCATCTGCCCGCCCTCAAGCTTAACAACAAGCTCCAACATCAGTTGACTAAAGAAACGTCATTACAGAACAAGGGTCAGGTCATGTAACAGCTCAAGCC ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATGGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGATGACTGTTTACGGTCGAGGAGTATCGGTGTTGATGCCCGGCGAAGCGATTCCAACCTACATTGCCCACCCTGTTCCTGCACCGTGCCCTCCCGAGCCCATTTTGAAGCCTCTGCATCCACATAACTTGAGCATCTGCCCGCCCTCAAGCTTAACAACAAGCTCCAACATCAGTTGACTAAAGAAACGTCATTACAGAACAAGGGTCAGGTCATGTAACAGCTCAAGCC ATGGGCGGCGAGCAAGAATGGGGCGACATAGCGCCGCCACTGCCGGCGGTGTTGCCGTTAAACCCAGAAAGAGAGGAGTATTGGAGTCGATTTGATGATTCTGTTAATGCGGTTTCGTTTGGGTTTGTAGCGACTGCCATTCTAATCTCTATGTTCCTTGTTATGGCCATTTTTGAGAGGTTTCTTAGACCCAGGACGGCGGCGGACATGGGCCGGCCGCCTTCTGATCTTGAAGCACAGATGGTGTTCGATGAAAAGCTTCGTTACCCATCTCCCAAGATGACTGTTTACGGTCGAGGAGTATCGGTGTTGATGCCCGGCGAAGCGATTCCAACCTACATTGCCCACCCTGTTCCTGCACCGTGCCCTCCCGAGCCCATTTTGAAGCCTCTGCATCCACATAACTTGAGCATCTGCCCGCCCTCAAGCTTAACAACAAGCTCCAACATCAGTTGA MGGEQEWGDIAPPLPAVLPLNPEREEYWSRFDDSVNAVSFGFVATAILISMFLVMAIFERFLRPRTAADMGRPPSDLEAQMVFDEKLRYPSPKMTVYGRGVSVLMPGEAIPTYIAHPVPAPCPPEPILKPLHPHNLSICPPSSLTTSSNIS
BLAST of Carg19108-RA vs. NCBI nr
Match: XP_022930795.1 (uncharacterized protein LOC111437169 isoform X1 [Cucurbita moschata]) HSP 1 Score: 307.0 bits (785), Expect = 3.6e-80 Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of Carg19108-RA vs. NCBI nr
Match: XP_023531017.1 (uncharacterized protein LOC111793399 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 306.6 bits (784), Expect = 4.7e-80 Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of Carg19108-RA vs. NCBI nr
Match: XP_022988986.1 (uncharacterized protein LOC111486185 isoform X1 [Cucurbita maxima]) HSP 1 Score: 303.1 bits (775), Expect = 5.2e-79 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Carg19108-RA vs. NCBI nr
Match: XP_004137014.1 (PREDICTED: uncharacterized protein LOC101213979 [Cucumis sativus] >KGN43593.1 hypothetical protein Csa_7G047290 [Cucumis sativus]) HSP 1 Score: 269.6 bits (688), Expect = 6.3e-69 Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Carg19108-RA vs. NCBI nr
Match: XP_022969286.1 (uncharacterized protein LOC111468338 isoform X1 [Cucurbita maxima]) HSP 1 Score: 258.1 bits (658), Expect = 1.9e-65 Identity = 126/151 (83.44%), Postives = 136/151 (90.07%), Query Frame = 0
BLAST of Carg19108-RA vs. TAIR10
Match: AT1G11120.1 (unknown protein) HSP 1 Score: 99.8 bits (247), Expect = 1.6e-21 Identity = 68/142 (47.89%), Postives = 80/142 (56.34%), Query Frame = 0
BLAST of Carg19108-RA vs. TAIR10
Match: AT4G28170.1 (unknown protein) HSP 1 Score: 77.4 bits (189), Expect = 8.3e-15 Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 0
BLAST of Carg19108-RA vs. TAIR10
Match: AT1G09812.1 (unknown protein) HSP 1 Score: 74.7 bits (182), Expect = 5.4e-14 Identity = 50/120 (41.67%), Postives = 65/120 (54.17%), Query Frame = 0
BLAST of Carg19108-RA vs. TAIR10
Match: AT1G58007.1 (unknown protein) HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12 Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Carg19108-RA vs. TrEMBL
Match: tr|A0A0A0K2A7|A0A0A0K2A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047290 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 4.2e-69 Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Carg19108-RA vs. TrEMBL
Match: tr|F6HIH2|F6HIH2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01900 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46 Identity = 103/147 (70.07%), Postives = 114/147 (77.55%), Query Frame = 0
BLAST of Carg19108-RA vs. TrEMBL
Match: tr|A5AET9|A5AET9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034449 PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 6.5e-46 Identity = 98/135 (72.59%), Postives = 109/135 (80.74%), Query Frame = 0
BLAST of Carg19108-RA vs. TrEMBL
Match: tr|V4U3R6|V4U3R6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017068mg PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44 Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = 0
BLAST of Carg19108-RA vs. TrEMBL
Match: tr|A0A2H5PTK3|A0A2H5PTK3_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_166240 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44 Identity = 101/149 (67.79%), Postives = 115/149 (77.18%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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