Carg18686-RA (mRNA) Silver-seed gourd

Overview
NameCarg18686-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein gamma response 1
LocationCucurbita_argyrosperma_scaffold_139 : 145590 .. 146825 (+)
Sequence length444
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTTTGAAGAAGGCTGAAGTTATTGAAGAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGAGTTGAATTTCTCTCTGGAGAATATTAATGAGCTTAAGTCGAATCCTTGGATAAAGAACGAGGAAATGGAAGGCAATGAATATGCGCTGTGCGAGTTATTGCATGAGATCCCACGTCGGTTGGAGAGTAGAACGAACTATTTCTTAAAAGGGTGTGGAAACCTCTCCTTAGTAGATGCGTTTTAAAACCGTGAGGTTGACGGCGGTATGTAACAGGCCAAAGCAGATAATATTTGCTAACGATGGTATTGGGCCGTTTCAAATGGTATCAAAGTCAGACATCGGGCGGTGTGCCAGCAAGGACGCTAGGCTCCAAAGGGGGTGGATTGTGAGATCCCTCATCGGTGGGAAAGTGGAACGAAAATTCATTACAAGGGTATGAAACCTCTATCTAATAGACTTGTTTTTATAACTTTGAGGCTGACGAAGATATGTAATAGACTAAAGTGGACAATATGTACTAGCGGTGGATTTGAGTTGTTACATACGGGCTGAGAGAAGGCAAGAAGAGGCGTCGTTGATGCATACAAAAGGCTGAAATCACAATATAACTATCTTCGCGATGTTATGCAGCTAAAAAACAGGATAAAATGGAAGTGATTCAAGGGCTTATAATCAAGATGTTGCATCCTCACCAGGTAACCACCCTCTTCATATTATAAATACAATTCCCCCCTTCTTAATGTGCATTTTGTTTTTGCAGTAGCCAGTGATGAGCCAAATTTCCTCAAACGTTATTATCCATACTCTATGTCTGAATAATTATGTATAAAATGTGCATCAGTGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

mRNA sequence

ATGGAGCTTTTGAAGAAGGCTGAAAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGATGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

Coding sequence (CDS)

ATGGAGCTTTTGAAGAAGGCTGAAAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGATGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

Protein sequence

MELLKKAEKEGKCKQILLQQINSAGSEISKNKVQLEEFLKEKKQLLADGLHLIGDIQGLVVKRRRGVTHMTIFFKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFECFLIHHTINRGVEPMRTNASTALSFMMLFFKMM
Homology
[Close]
BLAST of Carg18686-RA vs. NCBI nr
Match: XP_008461271.1 (PREDICTED: protein gamma response 1 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 74  FKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFEC---------FLIHHTIN 133
           F+NI ENLN  +K+RV +L L EVVVKDINMDVS +ETQ               I  T N
Sbjct: 518 FENIRENLNNPVKDRVQDLPLPEVVVKDINMDVSDDETQDLNAVNPRQHQQQMPISVTGN 577

Query: 134 RG-----VEPMRTNA 135
           RG     VEP+R  A
Sbjct: 578 RGGGIKFVEPVRKKA 592

[Close]
BLAST of Carg18686-RA vs. TrEMBL
Match: tr|A0A1S3CDW1|A0A1S3CDW1_CUCME (protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 74  FKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFEC---------FLIHHTIN 133
           F+NI ENLN  +K+RV +L L EVVVKDINMDVS +ETQ               I  T N
Sbjct: 518 FENIRENLNNPVKDRVQDLPLPEVVVKDINMDVSDDETQDLNAVNPRQHQQQMPISVTGN 577

Query: 134 RG-----VEPMRTNA 135
           RG     VEP+R  A
Sbjct: 578 RGGGIKFVEPVRKKA 592

The following BLAST results are available for this feature:
BLAST of Carg18686-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461271.13.1e-0449.33PREDICTED: protein gamma response 1 [Cucumis melo][more]
BLAST of Carg18686-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18686-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18686-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDW1|A0A1S3CDW1_CUCME2.1e-0449.33protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18686Carg18686gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18686-RACarg18686-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18686-RA.exon.1Carg18686-RA.exon.1exon
Carg18686-RA.exon.2Carg18686-RA.exon.2exon
Carg18686-RA.exon.3Carg18686-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18686-RA.CDS.1Carg18686-RA.CDS.1CDS
Carg18686-RA.CDS.2Carg18686-RA.CDS.2CDS
Carg18686-RA.CDS.3Carg18686-RA.CDS.3CDS