Carg18686 (gene) Silver-seed gourd

Overview
NameCarg18686
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein gamma response 1
LocationCucurbita_argyrosperma_scaffold_139 : 145590 .. 146825 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTTTGAAGAAGGCTGAAGTTATTGAAGAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGAGTTGAATTTCTCTCTGGAGAATATTAATGAGCTTAAGTCGAATCCTTGGATAAAGAACGAGGAAATGGAAGGCAATGAATATGCGCTGTGCGAGTTATTGCATGAGATCCCACGTCGGTTGGAGAGTAGAACGAACTATTTCTTAAAAGGGTGTGGAAACCTCTCCTTAGTAGATGCGTTTTAAAACCGTGAGGTTGACGGCGGTATGTAACAGGCCAAAGCAGATAATATTTGCTAACGATGGTATTGGGCCGTTTCAAATGGTATCAAAGTCAGACATCGGGCGGTGTGCCAGCAAGGACGCTAGGCTCCAAAGGGGGTGGATTGTGAGATCCCTCATCGGTGGGAAAGTGGAACGAAAATTCATTACAAGGGTATGAAACCTCTATCTAATAGACTTGTTTTTATAACTTTGAGGCTGACGAAGATATGTAATAGACTAAAGTGGACAATATGTACTAGCGGTGGATTTGAGTTGTTACATACGGGCTGAGAGAAGGCAAGAAGAGGCGTCGTTGATGCATACAAAAGGCTGAAATCACAATATAACTATCTTCGCGATGTTATGCAGCTAAAAAACAGGATAAAATGGAAGTGATTCAAGGGCTTATAATCAAGATGTTGCATCCTCACCAGGTAACCACCCTCTTCATATTATAAATACAATTCCCCCCTTCTTAATGTGCATTTTGTTTTTGCAGTAGCCAGTGATGAGCCAAATTTCCTCAAACGTTATTATCCATACTCTATGTCTGAATAATTATGTATAAAATGTGCATCAGTGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

mRNA sequence

ATGGAGCTTTTGAAGAAGGCTGAAAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGATGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

Coding sequence (CDS)

ATGGAGCTTTTGAAGAAGGCTGAAAAGGAAGGAAAATGCAAACAAATTTTGCTTCAGCAAATTAATTCAGCTGGCTCAGAAATATCAAAGAACAAAGTGCAGCTCGAGGAATTTCTGAAAGAGAAAAAACAACTTTTAGCCGATGGTCTCCATCTTATTGGAGATATACAAGGACTCGTCGTCAAGCGCAGGCGGGGCGTGACGCACATGACGATTTTCTTCAAGAACATCATAGAGAATTTAAACAAGGCTATGAAGGAAAGAGTTCATAATCTTGCTCTTCTTGAAGTGGTTGTAAAAGATATCAATATGGATGTCTCACACAACGAGACCCAGAGATTTGAATGCTTTTTAATCCACCACACAATCAATAGAGGCGTGGAGCCAATGAGAACGAATGCAAGCACTGCATTAAGTTTTATGATGCTGTTCTTCAAAATGATG

Protein sequence

MELLKKAEKEGKCKQILLQQINSAGSEISKNKVQLEEFLKEKKQLLADGLHLIGDIQGLVVKRRRGVTHMTIFFKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFECFLIHHTINRGVEPMRTNASTALSFMMLFFKMM
Homology
[Close]
BLAST of Carg18686 vs. NCBI nr
Match: XP_008461271.1 (PREDICTED: protein gamma response 1 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 74  FKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFEC---------FLIHHTIN 133
           F+NI ENLN  +K+RV +L L EVVVKDINMDVS +ETQ               I  T N
Sbjct: 518 FENIRENLNNPVKDRVQDLPLPEVVVKDINMDVSDDETQDLNAVNPRQHQQQMPISVTGN 577

Query: 134 RG-----VEPMRTNA 135
           RG     VEP+R  A
Sbjct: 578 RGGGIKFVEPVRKKA 592

[Close]
BLAST of Carg18686 vs. TrEMBL
Match: tr|A0A1S3CDW1|A0A1S3CDW1_CUCME (protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 74  FKNIIENLNKAMKERVHNLALLEVVVKDINMDVSHNETQRFEC---------FLIHHTIN 133
           F+NI ENLN  +K+RV +L L EVVVKDINMDVS +ETQ               I  T N
Sbjct: 518 FENIRENLNNPVKDRVQDLPLPEVVVKDINMDVSDDETQDLNAVNPRQHQQQMPISVTGN 577

Query: 134 RG-----VEPMRTNA 135
           RG     VEP+R  A
Sbjct: 578 RGGGIKFVEPVRKKA 592

The following BLAST results are available for this feature:
BLAST of Carg18686 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461271.13.1e-0449.33PREDICTED: protein gamma response 1 [Cucumis melo][more]
BLAST of Carg18686 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18686 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18686 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDW1|A0A1S3CDW1_CUCME2.1e-0449.33protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18686-RACarg18686-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18686Bhi09G000516Wax gourdcarwgoB0439
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg18686Silver-seed gourdcarcarB207
Carg18686Silver-seed gourdcarcarB288
Carg18686Silver-seed gourdcarcarB379
Carg18686Silver-seed gourdcarcarB380
Carg18686Silver-seed gourdcarcarB381
Carg18686Silver-seed gourdcarcarB382
Carg18686Silver-seed gourdcarcarB383
Carg18686Cucumber (Gy14) v2carcgybB0365
Carg18686Cucumber (Gy14) v2carcgybB0366
Carg18686Cucumber (Gy14) v1carcgyB0413
Carg18686Cucurbita maxima (Rimu)carcmaB0496
Carg18686Cucurbita maxima (Rimu)carcmaB0497
Carg18686Cucurbita maxima (Rimu)carcmaB0498
Carg18686Cucurbita maxima (Rimu)carcmaB0499
Carg18686Cucurbita moschata (Rifu)carcmoB0479
Carg18686Cucurbita moschata (Rifu)carcmoB0480
Carg18686Cucurbita moschata (Rifu)carcmoB0481
Carg18686Cucurbita moschata (Rifu)carcmoB0482
Carg18686Cucurbita pepo (Zucchini)carcpeB0493
Carg18686Cucurbita pepo (Zucchini)carcpeB0494
Carg18686Cucurbita pepo (Zucchini)carcpeB0495
Carg18686Wild cucumber (PI 183967)carcpiB0390
Carg18686Wild cucumber (PI 183967)carcpiB0391
Carg18686Cucumber (Chinese Long) v2carcuB0386
Carg18686Cucumber (Chinese Long) v2carcuB0387
Carg18686Cucumber (Chinese Long) v3carcucB0389
Carg18686Cucumber (Chinese Long) v3carcucB0390
Carg18686Bottle gourd (USVL1VR-Ls)carlsiB322
Carg18686Bottle gourd (USVL1VR-Ls)carlsiB321
Carg18686Melon (DHL92) v3.5.1carmeB0359
Carg18686Melon (DHL92) v3.5.1carmeB0360
Carg18686Melon (DHL92) v3.6.1carmedB0364
Carg18686Melon (DHL92) v3.6.1carmedB0365
Carg18686Watermelon (Charleston Gray)carwcgB0347
Carg18686Watermelon (Charleston Gray)carwcgB0345
Carg18686Watermelon (Charleston Gray)carwcgB0346
Carg18686Watermelon (97103) v1carwmB0344
Carg18686Watermelon (97103) v1carwmB0345
Carg18686Watermelon (97103) v1carwmB0346
Carg18686Watermelon (97103) v2carwmbB0369
Carg18686Watermelon (97103) v2carwmbB0370
Carg18686Watermelon (97103) v2carwmbB0371
Carg18686Wax gourdcarwgoB0437
Carg18686Wax gourdcarwgoB0438