Carg18685-RA (mRNA) Silver-seed gourd

Overview
NameCarg18685-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein gamma response 1
LocationCucurbita_argyrosperma_scaffold_139 : 144234 .. 145520 (+)
Sequence length375
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGGTATGTCTCTAATTCCTCTGCCCTCTGTTGATCAGCTGAAGTTTGCCGCATTTTCGAATTATTTTTCGTGCATTTTTATCTGCCTGATTACTGTTCAATCGAGCGAATGCAGAAAGAATACTTCCGCAATCTGTTACTATTCGACAATGAACTTTCAATCGTATTCCTAAATTTCAACCTGCGAGCCGTTCTATATGAATTTCTGCTTATCCACTTTTATGATTCCGAACTCTAGCATGGGATTCTCACCTTGTTCTTTCAAATCGTCCAGCAGTGGAATCGCTAACTTGTACTTCACCTTTTTCTGTTTGGATTGTACAATTTTTTTAGTGTTTATCTCCATTAGAATGTTGAACTTGCTGCGACTTGTATGCTTGCTAGTATGTAGTTTATGTTGCAAGCTCTGTGGTAAACGTGTTTTTGACAAATAGACCAATTTGATTTTCCGCTACGAATAGCTAAAAGCAGGATTTGATCTATAATTGCGAAACCTAGGTCAATCCCGCCATTAGTATAAGCAAAATCTCGGAGGCATAATGTATCGTTTGTAGAGATTCATCATTTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATATATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATGTATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATTGTTATGTATTTCCTCTTGCAATGCGGTTTTAGTCCAAGTTTCTTTGTTCCTGTTATTGTTTTCTTCAATAGTTGAAACTTAACTGGATGTTCTTTCTCCTTCGTTCATCTGGTTTTAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGGTTTGTTCAAAAACCTCTCTGATAATGAGTAATCAAATTCATTGCGCACCCAATTGACTAGCCTTGAGGGATAGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

mRNA sequence

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Coding sequence (CDS)

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Protein sequence

MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYKLQKL
Homology
[Close]
BLAST of Carg18685-RA vs. NCBI nr
Match: XP_023004494.1 (protein gamma response 1 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQK 159

[Close]
BLAST of Carg18685-RA vs. NCBI nr
Match: XP_023514213.1 (protein gamma response 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQK 159

[Close]
BLAST of Carg18685-RA vs. NCBI nr
Match: XP_022959640.1 (protein gamma response 1 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDE IELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEAIELQQK 159

[Close]
BLAST of Carg18685-RA vs. TrEMBL
Match: tr|A0A1S3CDW1|A0A1S3CDW1_CUCME (protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.6e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLRS+LL EQ K EE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRSKLLGEQLKAEELSQQLKQKSREIDEGIELQQK 159

The following BLAST results are available for this feature:
BLAST of Carg18685-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023004494.11.5e-0478.38protein gamma response 1 [Cucurbita maxima][more]
XP_023514213.11.5e-0478.38protein gamma response 1 [Cucurbita pepo subsp. pepo][more]
XP_022959640.17.6e-0475.68protein gamma response 1 [Cucurbita moschata][more]
BLAST of Carg18685-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18685-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18685-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDW1|A0A1S3CDW1_CUCME8.6e-0475.68protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18685Carg18685gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18685-RACarg18685-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18685-RA.exon.1Carg18685-RA.exon.1exon
Carg18685-RA.exon.2Carg18685-RA.exon.2exon
Carg18685-RA.exon.3Carg18685-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18685-RA.CDS.1Carg18685-RA.CDS.1CDS
Carg18685-RA.CDS.2Carg18685-RA.CDS.2CDS
Carg18685-RA.CDS.3Carg18685-RA.CDS.3CDS


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107