Carg18685 (gene) Silver-seed gourd

Overview
NameCarg18685
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein gamma response 1
LocationCucurbita_argyrosperma_scaffold_139 : 144234 .. 145520 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGGTATGTCTCTAATTCCTCTGCCCTCTGTTGATCAGCTGAAGTTTGCCGCATTTTCGAATTATTTTTCGTGCATTTTTATCTGCCTGATTACTGTTCAATCGAGCGAATGCAGAAAGAATACTTCCGCAATCTGTTACTATTCGACAATGAACTTTCAATCGTATTCCTAAATTTCAACCTGCGAGCCGTTCTATATGAATTTCTGCTTATCCACTTTTATGATTCCGAACTCTAGCATGGGATTCTCACCTTGTTCTTTCAAATCGTCCAGCAGTGGAATCGCTAACTTGTACTTCACCTTTTTCTGTTTGGATTGTACAATTTTTTTAGTGTTTATCTCCATTAGAATGTTGAACTTGCTGCGACTTGTATGCTTGCTAGTATGTAGTTTATGTTGCAAGCTCTGTGGTAAACGTGTTTTTGACAAATAGACCAATTTGATTTTCCGCTACGAATAGCTAAAAGCAGGATTTGATCTATAATTGCGAAACCTAGGTCAATCCCGCCATTAGTATAAGCAAAATCTCGGAGGCATAATGTATCGTTTGTAGAGATTCATCATTTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATATATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATAGTTATGTATGGTATTTGTAGAGATTCATCAATTTTTTGTGGAACTTTTACCTTTGTTGACATTGTTATGTATTTCCTCTTGCAATGCGGTTTTAGTCCAAGTTTCTTTGTTCCTGTTATTGTTTTCTTCAATAGTTGAAACTTAACTGGATGTTCTTTCTCCTTCGTTCATCTGGTTTTAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGGTTTGTTCAAAAACCTCTCTGATAATGAGTAATCAAATTCATTGCGCACCCAATTGACTAGCCTTGAGGGATAGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

mRNA sequence

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Coding sequence (CDS)

ATGTCAAGTCAATCGAATAGAACTGCGAGGTTTTTCGTCGGCCACTATACGTATTCTCCTATTGACTTCAGTTTTCGTCGATTAAAGAGCATTCTACATGAGATATGGAGGCTGACCAAGATCACTCTCTCAATCTTGGAGGGTCCTTTGTTGAAGGATTTATTGCGATCCGAACTACTGGATGAACAATTCAAAGTTGAGGAGGTATCACAGCATCTTAATCTGAAATGGAGAGAAATTGATGAGGGAATTGAATTGCAGCAGAAATTACTTGAAATGTTTGATGAGCTCCAAAAGAAGCTTAATGAGAAGACAGATGAAAAGTTGCAAGAGAACTTGTTCGAAAAATTGAATTACAAGCTTCAGAAATTATGA

Protein sequence

MSSQSNRTARFFVGHYTYSPIDFSFRRLKSILHEIWRLTKITLSILEGPLLKDLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQKLLEMFDELQKKLNEKTDEKLQENLFEKLNYKLQKL
Homology
[Close]
BLAST of Carg18685 vs. NCBI nr
Match: XP_023004494.1 (protein gamma response 1 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQK 159

[Close]
BLAST of Carg18685 vs. NCBI nr
Match: XP_023514213.1 (protein gamma response 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEGIELQQK 159

[Close]
BLAST of Carg18685 vs. NCBI nr
Match: XP_022959640.1 (protein gamma response 1 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLR++LLDEQ KVEE+SQ L  K REIDE IELQQK
Sbjct: 123 DLLRTKLLDEQLKVEELSQQLKQKSREIDEAIELQQK 159

[Close]
BLAST of Carg18685 vs. TrEMBL
Match: tr|A0A1S3CDW1|A0A1S3CDW1_CUCME (protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.6e-04
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 53  DLLRSELLDEQFKVEEVSQHLNLKWREIDEGIELQQK 90
           DLLRS+LL EQ K EE+SQ L  K REIDEGIELQQK
Sbjct: 123 DLLRSKLLGEQLKAEELSQQLKQKSREIDEGIELQQK 159

The following BLAST results are available for this feature:
BLAST of Carg18685 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023004494.11.5e-0478.38protein gamma response 1 [Cucurbita maxima][more]
XP_023514213.11.5e-0478.38protein gamma response 1 [Cucurbita pepo subsp. pepo][more]
XP_022959640.17.6e-0475.68protein gamma response 1 [Cucurbita moschata][more]
BLAST of Carg18685 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg18685 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg18685 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDW1|A0A1S3CDW1_CUCME8.6e-0475.68protein gamma response 1 OS=Cucumis melo OX=3656 GN=LOC103499908 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18685-RACarg18685-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18685Cla015226Watermelon (97103) v1carwmB0344
Carg18685Csa7G428840Cucumber (Chinese Long) v2carcuB0387
Carg18685MELO3C023535Melon (DHL92) v3.5.1carmeB0359
Carg18685ClCG09G004310Watermelon (Charleston Gray)carwcgB0345
Carg18685CSPI07G19400Wild cucumber (PI 183967)carcpiB0391
Carg18685CmaCh08G005390Cucurbita maxima (Rimu)carcmaB0499
Carg18685CmaCh17G009440Cucurbita maxima (Rimu)carcmaB0497
Carg18685CmoCh08G005310Cucurbita moschata (Rifu)carcmoB0482
Carg18685Lsi02G025900Bottle gourd (USVL1VR-Ls)carlsiB321
Carg18685Cp4.1LG17g08170Cucurbita pepo (Zucchini)carcpeB0494
Carg18685CsGy7G017730Cucumber (Gy14) v2carcgybB0366
Carg18685MELO3C023535.2Melon (DHL92) v3.6.1carmedB0364
Carg18685CsaV3_7G031230Cucumber (Chinese Long) v3carcucB0390
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18685Carg13453Silver-seed gourdcarcarB379
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18685Wax gourdcarwgoB0437
Carg18685Wax gourdcarwgoB0438
Carg18685Wax gourdcarwgoB0439
Carg18685Silver-seed gourdcarcarB207
Carg18685Silver-seed gourdcarcarB288
Carg18685Silver-seed gourdcarcarB380
Carg18685Silver-seed gourdcarcarB381
Carg18685Silver-seed gourdcarcarB382
Carg18685Silver-seed gourdcarcarB383
Carg18685Cucumber (Gy14) v2carcgybB0365
Carg18685Cucumber (Gy14) v1carcgyB0413
Carg18685Cucurbita maxima (Rimu)carcmaB0496
Carg18685Cucurbita maxima (Rimu)carcmaB0498
Carg18685Cucurbita moschata (Rifu)carcmoB0479
Carg18685Cucurbita moschata (Rifu)carcmoB0480
Carg18685Cucurbita moschata (Rifu)carcmoB0481
Carg18685Cucurbita pepo (Zucchini)carcpeB0493
Carg18685Cucurbita pepo (Zucchini)carcpeB0495
Carg18685Wild cucumber (PI 183967)carcpiB0390
Carg18685Cucumber (Chinese Long) v2carcuB0386
Carg18685Cucumber (Chinese Long) v3carcucB0389
Carg18685Bottle gourd (USVL1VR-Ls)carlsiB322
Carg18685Melon (DHL92) v3.5.1carmeB0360
Carg18685Melon (DHL92) v3.6.1carmedB0365
Carg18685Watermelon (Charleston Gray)carwcgB0347
Carg18685Watermelon (Charleston Gray)carwcgB0346
Carg18685Watermelon (97103) v1carwmB0345
Carg18685Watermelon (97103) v1carwmB0346
Carg18685Watermelon (97103) v2carwmbB0369
Carg18685Watermelon (97103) v2carwmbB0370
Carg18685Watermelon (97103) v2carwmbB0371