Carg18632-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18632-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At2g15690-like
Location	Cucurbita_argyrosperma_scaffold_147 : 278909 .. 282930 (-)
Sequence length	2247

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTGTGGGGATTACTGGTAAATACATCACCTGTATATACACAATCATATTTTGGCTTCCTTGGTAATATTATGACTTTGTTTTTTGTTTTCTTGAAAAGTCTCGTACCAATTCATACTAATGGTAGCGGATGTCGGACTCCTCTTCTAACAATTCCCAATAATTTTATGATAGAAAGCGAAGCCATTCCGTCGAAAAGGTCGAGAGTAGATTGAAAGATGAATATTCATAGTAAACATTAGATTTTGAGGATTCGGGTTCTAATGCAAATCTAAAAATTTTGAATCAAGTTTTAGTTTTTAAAAACTATTGAGTTTTGTATGGAAGGTAATATAATAAAGGTTTTATGGGTAGAAAATGAGAAAATTTAAGAAGAAGGGGTTGGACATGAGAATAATTAAATAATAAAAGTTTTATTAGTCGAAATTATGCAAATAAATATTTAATATTTAATTAGAAATGACAGCACATCCTTAAAATTAAATTTCCTAAAATACCCTTTGGATTAAAAATTTTGTGGGCCGAGGTGAAAAGAAGCAGGCCCAGGGTTGGGTGGAAGAAGTCCTCGCTCCGTAGTCCGTCGTTCCATTGAAATTCTCAAGATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGGTCAGTTCCTCAATCTCCTCCTCCCTCATCGTCTCTTTTGCTATTTCTTGAAGCTGAACGCCTTTCACATTCTCTTCTATTTCCTCAATCTCCTCCCCCTCTGATTTGATCCTTGGTTTTGCCTTTTCCTGTATCCTGTGTTTTTCTCTTTCTTTTATATGATCTTTTCATCTTCTCTGTCGTATAAATACTGCGCCTTATTTGTATAATAGTGGAAATCTCTTCTTCTTTTTTTTTCTATGTCTTTGGATTGTTGTTTCGGATATTCGATATTGGAATTTGATTAGGGTTTTAGCCGTTTGTTATTTTGAAAATTTACTACACTAAAACTTTCTATTTCCTAAGTAAGGAGGGAAAATGTCTGTGATTTAGGGTGCTATTTATGGCGGAATGGTTTCTCTGGATCTTATTTTCCGACTCATGTGACGGTAGTAAATTTCGAGTTACTCCATTTTGCCTGCTCCACGTTGATTTTTGTGCTTAACGAAGAAACATATTTTGTCACACGGCAGTGGTTTTCTAGATCTCTTTTCACTTCTGATTTTGTCTGAGAAGCCATTTTTTTGGGTATTTATTCATTGTTAGGAACGTCAGGAAAATCGATGTTTTGTAGAGGTTGATAAATATGTTCTTGTTTTCGACATGTCTTTAATTTAATTTTTTATCTCTTGGCTGCAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGGTAATTACCTTCAATACTCATGCTATTCTTGCACCTTTTCCTTGGTTGTTGAAGAATTCCTACCGTTTTCATGTTCATGTGTTCTTGGGATTATACCTATTAGCTTAGTTTTAGTATCTTACGCTGGCATTCAACTGATACAATTGTGTTTTAGAAACTCGTCTGTTTCTATATTGATTTTAACTTTGCTTCTAAGCATCGCACCACTTGTTGAACTGCGCAGCCACTCGTGAGAATTATAGTTCATGGACCTGTTTCCATTCATGGAACGGTATACATATTTGTTATACGTGGGAATGAATCCCCTCTCACCTGTAGCACTGTGCTTAGTATGATAGCATTTTTTTATTCCTAAAATGGGAGCATGAAAGTATCTACTATCCATCCGTGCATGAATTCTGTATTATCCCCCACTCGATGTTCATATCCTAAAATACTTGTCCTAAGCTTCACCTCATTGCTTTACTCACTGATTTTGCACATTACGTTTATAATGCAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGAGGACATTCATAGTCATTTGTGGAAGGGATGTCGACAATGGCGAATTCCCTTCTCTTTTCTGCGGGTACTTCGCATATAGTTTTTTTCTTTTTCTTTTTAATTAAGTTGAGAATTCTGCGAGCAACTCTGATAGATTAATAATAGCCCATGAATTCCGAGGGGGACTATAAAGGATTCTTGCGTTGTTCAAATTGATGCATGTTCTTGATAAATCCAGTTACTAACTATGAACTGGAAATCTGATTTGGTGAAACCTCCATACAAGATGTGGCTTTTGCTGCAACTTCCCTACATTTTTCTTGGAGCTTTTTCCCAGATGATGTGCCAGGTTGTACGTAGAACTAGAGGTATGTCATTGTGCAATCTTTGTATTTGGGTGTTCCATTCGAAATCTTCAATATCAAGTTCATCTCTCCC

mRNA sequence

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGAGGACATTCATAGTCATTTGTGGAAGGGATGTCGACAATGGCGAATTCCCTTCTCTTTTCTGCGGGTACTTCGCATATAGTTTTTTTCTTTTTCTTTTTAATTAAGTTGAGAATTCTGCGAGCAACTCTGATAGATTAATAATAGCCCATGAATTCCGAGGGGGACTATAAAGGATTCTTGCGTTGTTCAAATTGATGCATGTTCTTGATAAATCCAGTTACTAACTATGAACTGGAAATCTGATTTGGTGAAACCTCCATACAAGATGTGGCTTTTGCTGCAACTTCCCTACATTTTTCTTGGAGCTTTTTCCCAGATGATGTGCCAGGTTGTACGTAGAACTAGAGGTATGTCATTGTGCAATCTTTGTATTTGGGTGTTCCATTCGAAATCTTCAATATCAAGTTCATCTCTCCC

Coding sequence (CDS)

ATGGCTTCCTCGATTCCTTCTCAGACCACTCCGAACTCCATTATCACTACCAATTTCACATCGCGAATCATCCCATATCACTCTCCCGCGGTCAAATCCTTCCGACCCACGCTCTTCTGCCCTAATGCTCTCTCCAATTCCAGCAACCGGAAGCCGGCTCGCCGGTACGATGGCCAAACCACGACGAACACTCTCTCCAAATCTCAGAACCGGACGAGCGATTCAGTTCTTAGTCTTCCGTCGACGGTGGATTTAGTGGCTCTATGCGAGGCGGGCGAGGTAATGGACGTTCTGGAATTTATTGGCCAAGGTGCTAATCTTGATTATGGAATTTGTACAGCTTTGTTGAATTCTTGTTGCAATTTTAAGTTGCTTGAGGCTGGGAGAAGGGTGGATAGGCTGTTGAAAGGGACGAAATTTAGTGGGGATGTGGGATTGAACAATAAATTGATTGAAATGTACTCTTGTTGTGGCTGTATGAAAGATGCGCGTAGGGTGTTTGATAAAATGCCTGACAGGGATATTAGGACGTGGAATTTGATGATCAAGGGGTATGGAGAGAATGGGGAAGGAGATGGTGGGTTGGCCTTGTTTGAGCGAATGAAGAGTGTGGGATTGCAGCCAAATTCTGAAACATTTCTAGTGGTGTTAGCAGCTTGTGCCATGGCTGAAGCTGTGGAGGAAGGTTTATTTTACTTTAACTCTATGGAAAATGAATATGGAATCATTCCTGAAATCGAACATTATTTGGGAGTTGTTGATGTTCTTGGGAAATCTGGCCATTTGATTGAAGCAGAAGAGTTCATTAAGAAAATTCCCATCAACCCCACAGCCAAAATCTGGGATGCCCTTAGAATCTACGCTCGACTCCATGGAAACATCGAGCTTGAAGATCGAGCCGAAGAGCTGATATTCTCTTATGACCCGTCCATGGCGCCCACGGTTGCCAAGCCACCGCTCCCTCCCCCAAGGAAGCAATCGGCCACCAACATGTTGGAGGAGAAGGACAGAGTGAGGGAGTTCAGATGTGCAATGCCTTACAAAGAAGAGGGGGAAGGGGGGAAGCTAAAAGGATTGAATGGACAAATGAGAGAAGCAGGGTATGTGCCAGATACAAGATATGTGCTTCATGACATTGATGAGGAGGCTAAACAGCAAGCTTTGCAGTACCATAGCGAGCGGTTGGCCATTGCTTACGGATTGATCAGTACGCCTGCGAGAACGACGCTGAGAATCATCAAGAATCTTCGGATCTGCGGCGATTGTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGTTGATTGTTAGAGATAATAAGCGGTTTCATCACTTCAAAGACGGCAAATGCTCTTATCCCAATGCCTCATTCTCTCTTCTTCACGGTGTCGGAGCTCCACTTTCTCCCACTAGCGGCGACAGAAAGGAGTTTTCTAGCTTTCTTTTGGATTTAATGGCGTCCAAGTTGCATCAGTTGCAATCCAAGGCTTGTAAAGCTTCTCAATATGCTATCAAGCACGGGTCCTCCTATTATAAGCAGTTGTTGGAGCAGAACAAGCAATACATCCAAGAACCAGCTACTGTGGAGAAATGCAGCTTGCTTTCAGAGCAGTTGTTTTATACTCGTCTTGCTAGCATCCCAGGCCGATATGAATCATTCTGGAAAGAACTTGATTGTGTTAAAAACTTGTGGAAGAACCGGCAGGAGCTGAAAGTTGAAGATGCTGGCATCGCGGCCTTGTTCGGGCTTGAGTGTTTTGCATGGTTTTGTGCTGGCGAGATCGTTGGAAGGGGCTTTACATTCACAGGTTATTATGTCTGA

Protein sequence

MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQTTTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSYPNASFSLLHGVGAPLSPTSGDRKEFSSFLLDLMASKLHQLQSKACKASQYAIKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSEQLFYTRLASIPGRYESFWKELDCVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV

Homology

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_022938077.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X2 [Cucurbita moschata] >XP_022938078.1 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 905.6 bits (2339), Expect = 9.2e-260
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_022938076.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 905.6 bits (2339), Expect = 9.2e-260
Identity = 449/454 (98.90%), Postives = 451/454 (99.34%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPN+LSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNSLSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNN LIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNNLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPL PPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLLPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_023538219.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 898.7 bits (2321), Expect = 1.1e-257
Identity = 446/454 (98.24%), Postives = 449/454 (98.90%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQT PNSIITTNFTSRIIP+HSPAVKSFRP LFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTAPNSIITTNFTSRIIPFHSPAVKSFRPKLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGA+LDYGI TALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGAHLDYGIFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMK+VGLQPNSETFL VLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKNVGLQPNSETFLAVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN
Sbjct: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKD KCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDSKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_022966045.1 (pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 877.9 bits (2267), Expect = 2.0e-251
Identity = 437/454 (96.26%), Postives = 443/454 (97.58%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           MASSIPSQTTPNSIITTNFTSRIIP+HSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT
Sbjct: 1   MASSIPSQTTPNSIITTNFTSRIIPFHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLSKSQNRTSDSVLS PSTV LVALCEAGEVMDVLEFIG GANLDYGI TALLNSCC
Sbjct: 61  TTNTLSKSQNRTSDSVLSPPSTVHLVALCEAGEVMDVLEFIGHGANLDYGIFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL
Sbjct: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGDGGLALFERMK+VGLQPNSETFL VLAACAMAEAVEEGLFYFNSMENEY
Sbjct: 181 MIKGYGENGEGDGGLALFERMKNVGLQPNSETFLAVLAACAMAEAVEEGLFYFNSMENEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GIIPEIEHYL VVDVLGKSGHLIEAEEFIKK+PI+PTAKIWDALRIYARLHGNIELEDRA
Sbjct: 241 GIIPEIEHYLRVVDVLGKSGHLIEAEEFIKKMPISPTAKIWDALRIYARLHGNIELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EELIFSYDPSMAPT AKPPLPP RKQS TNMLEEKDRVR+FRC+MP KEEGE GKLKGLN
Sbjct: 301 EELIFSYDPSMAPTAAKPPLPPLRKQSVTNMLEEKDRVRDFRCSMPSKEEGERGKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 454

[Close]

BLAST of Carg18632-RA vs. NCBI nr
Match: XP_008459269.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis melo])

HSP 1 Score: 761.9 bits (1966), Expect = 1.6e-216
Identity = 383/454 (84.36%), Postives = 409/454 (90.09%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           M+SSI S  T NSI TTNF S IIP H PAVKSFR T    NALSNS  RK AR+YD Q+
Sbjct: 1   MSSSIHSHATVNSIATTNFKSLIIPIHFPAVKSFRSTPLSTNALSNSRFRKAARQYDAQS 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLS+SQN+TSDSV S PSTVDL+ALCE G+V+D LE+IGQGA +DYG+ TALLNSCC
Sbjct: 61  TTNTLSESQNQTSDSVYSFPSTVDLLALCEEGKVIDALEYIGQGAKVDYGVFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           N KLLEAGRRVD LLKGTKF GDV LNNKLIEMYS CGCMK+AR+VFDKMP++D RTWNL
Sbjct: 121 NLKLLEAGRRVDGLLKGTKFRGDVELNNKLIEMYSNCGCMKNARKVFDKMPNKDTRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGD GLALFE+MK+VGLQPNSETFLV+LAACAMAEAVEEG+FYFN M NEY
Sbjct: 181 MIKGYGENGEGDNGLALFEKMKNVGLQPNSETFLVILAACAMAEAVEEGVFYFNIMGNEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GI PEIEHYLGV+DVLGKSGHLIEAEEFI+K+PINPTAKIWDALR YARLHGN+ELEDRA
Sbjct: 241 GIDPEIEHYLGVIDVLGKSGHLIEAEEFIEKMPINPTAKIWDALRNYARLHGNMELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EEL+FS DPS   T  KP LPP RKQS+TNMLEEKDRVREFR AMPYKEEGE GKLKGLN
Sbjct: 301 EELMFSLDPSTTATTTKPSLPPRRKQSSTNMLEEKDRVREFRSAMPYKEEGE-GKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQM+EAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMKEAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 453

[Close]

BLAST of Carg18632-RA vs. TAIR10
Match: AT2G15690.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 339.7 bits (870), Expect = 3.6e-93
Identity = 180/375 (48.00%), Postives = 223/375 (59.47%), Query Frame = 0


Query: 80  PSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTK 139
           PS  +++ LC+     D +E + +GA  D      L  SC N K LE  ++V      +K
Sbjct: 207 PSVEEVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSK 266

Query: 140 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 199
           F GD  LNN +I M+  C  + DA+RVFD M D+D+ +W+LM+  Y +NG GD  L LFE
Sbjct: 267 FRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFE 326

Query: 200 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 259
            M   GL+PN ETFL V  ACA                                      
Sbjct: 327 EMTKHGLKPNEETFLTVFLACATVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 386

Query: 260 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 319
               EAE++I+ +P  PTA  W+A+R YARLHG+I+LED  EEL+   DPS A  + K P
Sbjct: 387 XXXXEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKA-VINKIP 446

Query: 320 LPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDI 379
            PPP+    TNM+  K R+ EFR    YK+E +    K      +   YVPDTR+VLHDI
Sbjct: 447 TPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK------KGVVYVPDTRFVLHDI 506

Query: 380 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 439
           D+EAK+QAL YHSERLAIAYG+I TP R TL IIKNLR+CGDCHN IKIMSKI+GR LIV
Sbjct: 507 DQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIV 566

Query: 440 RDNKRFHHFKDGKCS 455
           RDNKRFHHFKDGKCS
Sbjct: 567 RDNKRFHHFKDGKCS 574

[Close]

BLAST of Carg18632-RA vs. TAIR10
Match: AT4G32450.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 261.9 bits (668), Expect = 9.6e-70
Identity = 141/386 (36.53%), Postives = 220/386 (56.99%), Query Frame = 0


Query: 84  DLVALCEAGEVMDVLEFIGQGANLDYGICTALL----NSCCNFKLLEAGRRVDRLLKGTK 143
           +L ++C  G+V   +E I    N  Y +    L      C + + L+  + V   +  + 
Sbjct: 152 ELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSV 211

Query: 144 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 203
              D+   N +IEMYS CG ++DA  VF+ MP+R++ TW  +I+ + +NG+G+  +  F 
Sbjct: 212 GISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFS 271

Query: 204 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 263
           R K  G +P+ E F  +  AC +   + EGL +F SM  EYGIIP +EHY+ +V +L + 
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331

Query: 264 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 323
           G+L EA  F++   + P   +W+ L   +R+HG++ L DR ++++   D S     +K  
Sbjct: 332 GYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAG 391

Query: 324 LPPPRKQSATNMLEEK--DRVREFRCAMPYKEEGEGGK---------LKGLNGQMREAGY 383
           L P +   ++++++EK     +     + Y   G+  +         LK L   M E GY
Sbjct: 392 LVPVK---SSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHMIEIGY 451

Query: 384 VPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKI 443
           VP ++  LHD+D+E+K + L  H+ER A     + TPAR+ +R++KNLR+C DCHNA+K+
Sbjct: 452 VPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKL 511

Query: 444 MSKIVGRELIVRDNKRFHHFKDGKCS 455
           MSKIVGRELI RD KRFHH KDG CS
Sbjct: 512 MSKIVGRELISRDAKRFHHMKDGVCS 532

[Close]

BLAST of Carg18632-RA vs. TAIR10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-69
Identity = 139/375 (37.07%), Postives = 219/375 (58.40%), Query Frame = 0


Query: 103 QGANLDYGICTALLNSCCNFKLLEAGRRV-DRLLKGTKFSGDVGLNNKLIEMYSCCGCMK 162
           +G  L+    ++ L++C +   LE G+++  RL+KG   +G   + N L+ MY  CG ++
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIE 462

Query: 163 DARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACA 222
           +A  +F +M  +DI +WN MI GY  +G G+  L  FE MK  GL+P+  T + VL+AC+
Sbjct: 463 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 522

Query: 223 MAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIW 282
               V++G  YF +M  +YG++P  +HY  +VD+LG++G L +A   +K +P  P A IW
Sbjct: 523 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 582

Query: 283 DALRIYARLHGNIELEDRAEELIFSYDP--------------------SMAPTVAKPPLP 342
             L   +R+HGN EL + A + IF+ +P                     +     +    
Sbjct: 583 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 642

Query: 343 PPRKQSATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDI 402
             +K    + +E +++   F     +  E +     L+ L+ +M++AGYV  T  VLHD+
Sbjct: 643 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDV 702

Query: 403 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 455
           +EE K++ ++YHSERLA+AYG++   +   +R+IKNLR+C DCHNAIK M++I GR +I+
Sbjct: 703 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIIL 762

[Close]

BLAST of Carg18632-RA vs. TAIR10
Match: AT5G52630.1 (mitochondrial RNAediting factor 1)

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-69
Identity = 144/369 (39.02%), Postives = 215/369 (58.27%), Query Frame = 0


Query: 108 DYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVF 167
           DY   +++++ C N  LLE GR++  L   + F     + + L+ +YS CG  + A +VF
Sbjct: 217 DYSF-SSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 276

Query: 168 DKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVE 227
           +++P +++  WN M+K Y ++      + LF+RMK  G++PN  TFL VL AC+ A  V+
Sbjct: 277 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 336

Query: 228 EGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIY 287
           EG +YF+ M+ E  I P  +HY  +VD+LG++G L EA E I  +PI+PT  +W AL   
Sbjct: 337 EGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTS 396

Query: 288 ARLHGNIELEDRAEELIFSYDP-------SMAPTVAKPPL-------------PPPRKQS 347
             +H N EL   A + +F   P       S++   A                    +K++
Sbjct: 397 CTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKET 456

Query: 348 ATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQ 407
             + +EE+++V  F       E+ +    KL  L  +M +AGY+ DT YVL ++D + K 
Sbjct: 457 GLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKN 516

Query: 408 QALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 455
           Q ++YHSERLAIA+GLI+ PA   +R++KNLR+CGDCHNAIK MS    R +IVRDN RF
Sbjct: 517 QTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRF 576

[Close]

BLAST of Carg18632-RA vs. TAIR10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 261.2 bits (666), Expect = 1.6e-69
Identity = 145/366 (39.62%), Postives = 203/366 (55.46%), Query Frame = 0


Query: 113 TALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPD 172
           T +L++C     L  G+ V  L++ T F   + ++  LI MY+ CG + +ARR+FD M  
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483

Query: 173 RDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFY 232
           ++  TWN MI GYG +G+G   L +F  M + G+ P   TFL VL AC+ A  V+EG   
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543

Query: 233 FNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHG 292
           FNSM + YG  P ++HY  +VD+LG++GHL  A +FI+ + I P + +W+ L    R+H 
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603

Query: 293 NIELEDRAEELIFSYDPS------MAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMP 352
           +  L     E +F  DP       +   +       P  Q+AT     K R         
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP--QAATVRQTAKKRKLAKAPGYT 663

Query: 353 YKEEGEG------------------GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQAL 412
             E GE                    KL+ L G+MREAGY P+T   LHD++EE ++  +
Sbjct: 664 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 723

Query: 413 QYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 455
           + HSERLAIA+GLI+T   T +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF
Sbjct: 724 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 783

[Close]

BLAST of Carg18632-RA vs. Swiss-Prot
Match: sp|Q9ZQE5|PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2)

HSP 1 Score: 339.7 bits (870), Expect = 6.6e-92
Identity = 180/375 (48.00%), Postives = 223/375 (59.47%), Query Frame = 0


Query: 80  PSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTK 139
           PS  +++ LC+     D +E + +GA  D      L  SC N K LE  ++V      +K
Sbjct: 207 PSVEEVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSK 266

Query: 140 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 199
           F GD  LNN +I M+  C  + DA+RVFD M D+D+ +W+LM+  Y +NG GD  L LFE
Sbjct: 267 FRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFE 326

Query: 200 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 259
            M   GL+PN ETFL V  ACA                                      
Sbjct: 327 EMTKHGLKPNEETFLTVFLACATVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 386

Query: 260 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 319
               EAE++I+ +P  PTA  W+A+R YARLHG+I+LED  EEL+   DPS A  + K P
Sbjct: 387 XXXXEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKA-VINKIP 446

Query: 320 LPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDI 379
            PPP+    TNM+  K R+ EFR    YK+E +    K      +   YVPDTR+VLHDI
Sbjct: 447 TPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK------KGVVYVPDTRFVLHDI 506

Query: 380 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 439
           D+EAK+QAL YHSERLAIAYG+I TP R TL IIKNLR+CGDCHN IKIMSKI+GR LIV
Sbjct: 507 DQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIV 566

Query: 440 RDNKRFHHFKDGKCS 455
           RDNKRFHHFKDGKCS
Sbjct: 567 RDNKRFHHFKDGKCS 574

[Close]

BLAST of Carg18632-RA vs. Swiss-Prot
Match: sp|Q9SUU7|PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-68
Identity = 141/386 (36.53%), Postives = 220/386 (56.99%), Query Frame = 0


Query: 84  DLVALCEAGEVMDVLEFIGQGANLDYGICTALL----NSCCNFKLLEAGRRVDRLLKGTK 143
           +L ++C  G+V   +E I    N  Y +    L      C + + L+  + V   +  + 
Sbjct: 152 ELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSV 211

Query: 144 FSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFE 203
              D+   N +IEMYS CG ++DA  VF+ MP+R++ TW  +I+ + +NG+G+  +  F 
Sbjct: 212 GISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFS 271

Query: 204 RMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKS 263
           R K  G +P+ E F  +  AC +   + EGL +F SM  EYGIIP +EHY+ +V +L + 
Sbjct: 272 RFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEP 331

Query: 264 GHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPP 323
           G+L EA  F++   + P   +W+ L   +R+HG++ L DR ++++   D S     +K  
Sbjct: 332 GYLDEALRFVES--MEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESKAG 391

Query: 324 LPPPRKQSATNMLEEK--DRVREFRCAMPYKEEGEGGK---------LKGLNGQMREAGY 383
           L P +   ++++++EK     +     + Y   G+  +         LK L   M E GY
Sbjct: 392 LVPVK---SSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHMIEIGY 451

Query: 384 VPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKI 443
           VP ++  LHD+D+E+K + L  H+ER A     + TPAR+ +R++KNLR+C DCHNA+K+
Sbjct: 452 VPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKL 511

Query: 444 MSKIVGRELIVRDNKRFHHFKDGKCS 455
           MSKIVGRELI RD KRFHH KDG CS
Sbjct: 512 MSKIVGRELISRDAKRFHHMKDGVCS 532

[Close]

BLAST of Carg18632-RA vs. Swiss-Prot
Match: sp|Q9SY02|PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-68
Identity = 139/375 (37.07%), Postives = 219/375 (58.40%), Query Frame = 0


Query: 103 QGANLDYGICTALLNSCCNFKLLEAGRRV-DRLLKGTKFSGDVGLNNKLIEMYSCCGCMK 162
           +G  L+    ++ L++C +   LE G+++  RL+KG   +G   + N L+ MY  CG ++
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG-CFVGNALLLMYCKCGSIE 462

Query: 163 DARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACA 222
           +A  +F +M  +DI +WN MI GY  +G G+  L  FE MK  GL+P+  T + VL+AC+
Sbjct: 463 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 522

Query: 223 MAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIW 282
               V++G  YF +M  +YG++P  +HY  +VD+LG++G L +A   +K +P  P A IW
Sbjct: 523 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 582

Query: 283 DALRIYARLHGNIELEDRAEELIFSYDP--------------------SMAPTVAKPPLP 342
             L   +R+HGN EL + A + IF+ +P                     +     +    
Sbjct: 583 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 642

Query: 343 PPRKQSATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDI 402
             +K    + +E +++   F     +  E +     L+ L+ +M++AGYV  T  VLHD+
Sbjct: 643 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDV 702

Query: 403 DEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIV 455
           +EE K++ ++YHSERLA+AYG++   +   +R+IKNLR+C DCHNAIK M++I GR +I+
Sbjct: 703 EEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIIL 762

[Close]

BLAST of Carg18632-RA vs. Swiss-Prot
Match: sp|Q9LTF4|PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-68
Identity = 144/369 (39.02%), Postives = 215/369 (58.27%), Query Frame = 0


Query: 108 DYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVF 167
           DY   +++++ C N  LLE GR++  L   + F     + + L+ +YS CG  + A +VF
Sbjct: 217 DYSF-SSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVF 276

Query: 168 DKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVE 227
           +++P +++  WN M+K Y ++      + LF+RMK  G++PN  TFL VL AC+ A  V+
Sbjct: 277 NEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVD 336

Query: 228 EGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIY 287
           EG +YF+ M+ E  I P  +HY  +VD+LG++G L EA E I  +PI+PT  +W AL   
Sbjct: 337 EGRYYFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTS 396

Query: 288 ARLHGNIELEDRAEELIFSYDP-------SMAPTVAKPPL-------------PPPRKQS 347
             +H N EL   A + +F   P       S++   A                    +K++
Sbjct: 397 CTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKET 456

Query: 348 ATNMLEEKDRVREFRCAMPYKEEGEG--GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQ 407
             + +EE+++V  F       E+ +    KL  L  +M +AGY+ DT YVL ++D + K 
Sbjct: 457 GLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKN 516

Query: 408 QALQYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 455
           Q ++YHSERLAIA+GLI+ PA   +R++KNLR+CGDCHNAIK MS    R +IVRDN RF
Sbjct: 517 QTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRF 576

[Close]

BLAST of Carg18632-RA vs. Swiss-Prot
Match: sp|Q9SUH6|PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-68
Identity = 145/366 (39.62%), Postives = 203/366 (55.46%), Query Frame = 0


Query: 113 TALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPD 172
           T +L++C     L  G+ V  L++ T F   + ++  LI MY+ CG + +ARR+FD M  
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483

Query: 173 RDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFY 232
           ++  TWN MI GYG +G+G   L +F  M + G+ P   TFL VL AC+ A  V+EG   
Sbjct: 484 KNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEI 543

Query: 233 FNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHG 292
           FNSM + YG  P ++HY  +VD+LG++GHL  A +FI+ + I P + +W+ L    R+H 
Sbjct: 544 FNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHK 603

Query: 293 NIELEDRAEELIFSYDPS------MAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMP 352
           +  L     E +F  DP       +   +       P  Q+AT     K R         
Sbjct: 604 DTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYP--QAATVRQTAKKRKLAKAPGYT 663

Query: 353 YKEEGEG------------------GKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQAL 412
             E GE                    KL+ L G+MREAGY P+T   LHD++EE ++  +
Sbjct: 664 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 723

Query: 413 QYHSERLAIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 455
           + HSERLAIA+GLI+T   T +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF
Sbjct: 724 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 783

[Close]

BLAST of Carg18632-RA vs. TrEMBL
Match: tr|A0A1S3C9A6|A0A1S3C9A6_CUCME (pentatricopeptide repeat-containing protein At2g15690-like OS=Cucumis melo OX=3656 GN=LOC103498440 PE=4 SV=1)

HSP 1 Score: 761.9 bits (1966), Expect = 1.1e-216
Identity = 383/454 (84.36%), Postives = 409/454 (90.09%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           M+SSI S  T NSI TTNF S IIP H PAVKSFR T    NALSNS  RK AR+YD Q+
Sbjct: 1   MSSSIHSHATVNSIATTNFKSLIIPIHFPAVKSFRSTPLSTNALSNSRFRKAARQYDAQS 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
           TTNTLS+SQN+TSDSV S PSTVDL+ALCE G+V+D LE+IGQGA +DYG+ TALLNSCC
Sbjct: 61  TTNTLSESQNQTSDSVYSFPSTVDLLALCEEGKVIDALEYIGQGAKVDYGVFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           N KLLEAGRRVD LLKGTKF GDV LNNKLIEMYS CGCMK+AR+VFDKMP++D RTWNL
Sbjct: 121 NLKLLEAGRRVDGLLKGTKFRGDVELNNKLIEMYSNCGCMKNARKVFDKMPNKDTRTWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYGENGEGD GLALFE+MK+VGLQPNSETFLV+LAACAMAEAVEEG+FYFN M NEY
Sbjct: 181 MIKGYGENGEGDNGLALFEKMKNVGLQPNSETFLVILAACAMAEAVEEGVFYFNIMGNEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GI PEIEHYLGV+DVLGKSGHLIEAEEFI+K+PINPTAKIWDALR YARLHGN+ELEDRA
Sbjct: 241 GIDPEIEHYLGVIDVLGKSGHLIEAEEFIEKMPINPTAKIWDALRNYARLHGNMELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EEL+FS DPS   T  KP LPP RKQS+TNMLEEKDRVREFR AMPYKEEGE GKLKGLN
Sbjct: 301 EELMFSLDPSTTATTTKPSLPPRRKQSSTNMLEEKDRVREFRSAMPYKEEGE-GKLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQM+EAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMKEAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 453

[Close]

BLAST of Carg18632-RA vs. TrEMBL
Match: tr|A0A0A0LEV9|A0A0A0LEV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000530 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 3.2e-200
Identity = 356/454 (78.41%), Postives = 384/454 (84.58%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT 60
           M+SSIPS  T NS  TTNF SRI+P+H P +KSFR TL   NALSNS  RK A +YD Q+
Sbjct: 1   MSSSIPSHATVNSTATTNFKSRILPFHFPVLKSFRSTLLSTNALSNSRFRKSAHQYDAQS 60

Query: 61  TTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQGANLDYGICTALLNSCC 120
                                     ALCE G+V+DVLE+IGQGA +DYG+ TALLNSCC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXALCEEGKVIDVLEYIGQGAKVDYGVFTALLNSCC 120

Query: 121 NFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDKMPDRDIRTWNL 180
           N KLLEAGRRVD LLKGTKF GD+ LNN+LIEMYS CGCMKDAR+VFDKM ++D  +WNL
Sbjct: 121 NLKLLEAGRRVDGLLKGTKFRGDLELNNRLIEMYSNCGCMKDARKVFDKMANKDTSSWNL 180

Query: 181 MIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEGLFYFNSMENEY 240
           MIKGYG+NGEGD GLALFE+MK+ GLQPNSETFLVVLAACAMAEAV+EG+FYF  M NEY
Sbjct: 181 MIKGYGDNGEGDNGLALFEQMKNAGLQPNSETFLVVLAACAMAEAVKEGVFYFKIMANEY 240

Query: 241 GIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYARLHGNIELEDRA 300
           GI PEIEHYLGVVDVLGKSGHLIEAEEFI+K+PINPTAKIWDALR YARLHGN+ELEDRA
Sbjct: 241 GINPEIEHYLGVVDVLGKSGHLIEAEEFIEKMPINPTAKIWDALRNYARLHGNMELEDRA 300

Query: 301 EELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKEEGEGGKLKGLN 360
           EEL+FS DPS   T  KP LPP RKQS+TNMLEEKDRVREFRCAMPYKEEGE G+LKGLN
Sbjct: 301 EELMFSLDPSTTSTTIKPSLPPRRKQSSTNMLEEKDRVREFRCAMPYKEEGE-GRLKGLN 360

Query: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420
           GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG
Sbjct: 361 GQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTTLRIIKNLRICG 420

Query: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 453

[Close]

BLAST of Carg18632-RA vs. TrEMBL
Match: tr|A0A2N9FV74|A0A2N9FV74_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22439 PE=4 SV=1)

HSP 1 Score: 529.6 bits (1363), Expect = 9.0e-147
Identity = 266/410 (64.88%), Postives = 322/410 (78.54%), Query Frame = 0


Query: 45  SNSSNRKPARRYDGQTTTNTLSKSQNRTSDSVLSLPSTVDLVALCEAGEVMDVLEFIGQG 104
           S+ +N+K       ++ +N    +    SD +   P  VDL+ LCE G+V  V+E++GQG
Sbjct: 72  SSQTNKK-------KSHSNEQKLNDENESDPLRGDPPNVDLMGLCEEGKVEQVVEYMGQG 131

Query: 105 ANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDAR 164
            + DYG+  ALL+SC + K L+ G+RV+  LK + F GD+ LNNKLI MY  CG M+DAR
Sbjct: 132 VSADYGVFCALLDSCGDSKSLQVGKRVNEFLKRSPFRGDIELNNKLIGMYVRCGSMRDAR 191

Query: 165 RVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAE 224
           RVFDKM +R++ +W+LMI GY  NG+G+ GL LFE M+ VGLQP+SETF+VVLAACA  E
Sbjct: 192 RVFDKMRERNMNSWHLMIHGYAVNGQGNYGLLLFEEMRKVGLQPDSETFVVVLAACASVE 251

Query: 225 AVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDAL 284
           AV+EGL YFN M+NEY I+  IEHYLGV+DVLG SGHL EAEEFI+K+P+ PTA++W+AL
Sbjct: 252 AVKEGLMYFNLMKNEYRIVRGIEHYLGVIDVLGASGHLNEAEEFIEKMPVEPTAEVWEAL 311

Query: 285 RIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCA 344
             YAR+HG+IELEDR +EL+ S DPS +    K P+P  +K SA NMLEEK+RV E+RC 
Sbjct: 312 GTYARIHGDIELEDRVDELLVSLDPSKS-IADKIPIPVRKKHSAINMLEEKNRVSEYRCT 371

Query: 345 MPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLIST 404
            PYK  G   +LKGLNGQMREAGYVPDTRYVLHDIDE+AK+QALQYHSERLAIAYGLIST
Sbjct: 372 SPYKGGGY-ERLKGLNGQMREAGYVPDTRYVLHDIDEDAKEQALQYHSERLAIAYGLIST 431

Query: 405 PARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           P RTTLRIIKNLRICGDCHNAIKIMS+IVGRELIVRDNKRFHHFKDGKCS
Sbjct: 432 PPRTTLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCS 472

[Close]

BLAST of Carg18632-RA vs. TrEMBL
Match: tr|A5C1E4|A5C1E4_VITVI (Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_013147 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.5e-146
Identity = 286/479 (59.71%), Postives = 346/479 (72.23%), Query Frame = 0


Query: 1   MASSIPSQTTPNSIITTNFTSRIIPYHSPAVK----SFRP-----TLFCPNALSN----- 60
           MAS +    T NSIIT+NF +R IP HS A+     S  P      L C  AL N     
Sbjct: 1   MASXMSLNRTGNSIITSNFKAR-IPAHSSALPLKPISSSPQNPPLKLLCTYALPNHQPTN 60

Query: 61  --------SSNRKPARRYDGQTTTNTLSKSQNRT---SDSVLSLPSTVDLVALCEAGEVM 120
                   +++  P ++++GQ  T T   +QN     +++   + S VDL+ LCE G++ 
Sbjct: 61  KPRVFRRQTNSTHPPKQHNGQNLTGTQLNTQNANYPQTENFTVVHSGVDLMGLCEEGKIR 120

Query: 121 DVLEFIGQGANLDYGICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYS 180
           + +E++GQG   +YG+  A+L+SC   K LE GRRV  LL  +KF GDV LNNKLIEMY 
Sbjct: 121 EAVEYMGQGVCAEYGVFCAMLSSCGKTKSLEVGRRVHDLLARSKFGGDVELNNKLIEMYG 180

Query: 181 CCGCMKDARRVFDKMPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLV 240
            CG M+DARRVFD+M +R++ +W+LMI GY  NG+G  GL LFERM+ VGL+P  ETF+ 
Sbjct: 181 RCGSMRDARRVFDRMRERNMSSWHLMINGYAANGQGRDGLLLFERMRKVGLRPVGETFVA 240

Query: 241 VLAACAMAEAVEEGLFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPIN 300
           VL+AC    +VEEGL YF  M+ E GIIP IEHYLGV+DVLGK GH+ EAEEF+ K+PI 
Sbjct: 241 VLSACG---SVEEGLMYFELMKKECGIIPGIEHYLGVIDVLGKFGHINEAEEFVDKMPIE 300

Query: 301 PTAKIWDALRIYARLHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEK 360
           PTA++W+ALR +AR+HG IELEDRAEE++ + DPS A T  K P PP +KQ A NMLE K
Sbjct: 301 PTAEVWEALRNFARIHGAIELEDRAEEMLAALDPSKAIT-DKIPTPPQKKQLAVNMLEGK 360

Query: 361 DRVREFRCAMPYKEEGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERL 420
           +RV E+R   PYK +    KLKGLNGQMREAGYVPDTRYVLHDID+EAK+QAL YHSERL
Sbjct: 361 NRVSEYRSTNPYKGDAY-EKLKGLNGQMREAGYVPDTRYVLHDIDQEAKEQALLYHSERL 420

Query: 421 AIAYGLISTPARTTLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           AIAYGLISTPART LRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 421 AIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 473

[Close]

BLAST of Carg18632-RA vs. TrEMBL
Match: tr|A0A2P5BNT2|A0A2P5BNT2_PARAD (DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222880 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 5.9e-146
Identity = 275/465 (59.14%), Postives = 338/465 (72.69%), Query Frame = 0


Query: 15  ITTNFTSRIIPYHSPAVKSFRPTLFCPNALSNSSNRKPARRYDGQT---TTNTLSKSQ-- 74
           + TNF S   P+ + ++ +  P   C  A+ N+++   +RRY G T   +  +  K+Q  
Sbjct: 32  LKTNFFSLKTPFPASSLNAISPKPLCNYAVPNANSAGVSRRYGGATGRGSARSPYKTQPL 91

Query: 75  NRTSDSVLSLPS--------------------TVDLVALCEAGEVMDVLEFIGQGANLDY 134
            R   S+L  P+                    + DL+ALC  G++ +VLE +G G + DY
Sbjct: 92  ERRKKSLLQKPNPNDNQLNNQNENDPLRKNLQSADLIALCHDGKIEEVLELMGDGVSADY 151

Query: 135 GICTALLNSCCNFKLLEAGRRVDRLLKGTKFSGDVGLNNKLIEMYSCCGCMKDARRVFDK 194
            + +ALL+SC + K LE G+RV   LK + F GD+ LN+KLI+MY  CG MKDAR+VFD+
Sbjct: 152 NVFSALLDSCRDPKSLEVGKRVHEFLKRSSFRGDIELNDKLIKMYGKCGSMKDARKVFDR 211

Query: 195 MPDRDIRTWNLMIKGYGENGEGDGGLALFERMKSVGLQPNSETFLVVLAACAMAEAVEEG 254
           M +R   +W+LMI GY  NG G+ G+ LFE MK VGL P+ E+FL VLAACA AEAVEEG
Sbjct: 212 MTERSRSSWHLMINGYSVNGIGEDGIFLFEEMKKVGLDPDRESFLAVLAACASAEAVEEG 271

Query: 255 LFYFNSMENEYGIIPEIEHYLGVVDVLGKSGHLIEAEEFIKKIPINPTAKIWDALRIYAR 314
           L Y  SM +EYGI+P IEHYLGV+DVLG SGHL EAE+FI+K+P+  T ++W+ LR +AR
Sbjct: 272 LQYLESMTSEYGIMPGIEHYLGVIDVLGMSGHLNEAEKFIEKMPVESTFEVWETLRNFAR 331

Query: 315 LHGNIELEDRAEELIFSYDPSMAPTVAKPPLPPPRKQSATNMLEEKDRVREFRCAMPYKE 374
           +HG++ELEDR EEL+ + DPS A    K PLP  ++ SATNMLEEK+RV EFRC+ PYKE
Sbjct: 332 IHGDLELEDRVEELLVAMDPSKA-IANKFPLPQRKRHSATNMLEEKNRVTEFRCSNPYKE 391

Query: 375 EGEGGKLKGLNGQMREAGYVPDTRYVLHDIDEEAKQQALQYHSERLAIAYGLISTPARTT 434
           E    KLKGLNGQMREAGYVPDTRYVLHDIDEEAK+QALQYHSERLAIAYGLISTP RTT
Sbjct: 392 EAY-QKLKGLNGQMREAGYVPDTRYVLHDIDEEAKEQALQYHSERLAIAYGLISTPPRTT 451

Query: 435 LRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 455
           LRI+KNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS
Sbjct: 452 LRIMKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCS 494

The following BLAST results are available for this feature:

BLAST of Carg18632-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938077.1	9.2e-260	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
XP_022938076.1	9.2e-260	98.90	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like isofor...	[more]
XP_023538219.1	1.1e-257	98.24	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucur...	[more]
XP_022966045.1	2.0e-251	96.26	pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like [Cucur...	[more]
XP_008459269.1	1.6e-216	84.36	PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis m...	[more]

BLAST of Carg18632-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15690.1	3.6e-93	48.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32450.1	9.6e-70	36.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	1.3e-69	37.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G52630.1	1.3e-69	39.02	mitochondrial RNAediting factor 1	[more]
AT4G30700.1	1.6e-69	39.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg18632-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZQE5\|PP153_ARATH	6.6e-92	48.00	Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidop...	[more]
sp\|Q9SUU7\|PP346_ARATH	1.7e-68	36.53	Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidop...	[more]
sp\|Q9SY02\|PP301_ARATH	2.3e-68	37.07	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LTF4\|PP429_ARATH	2.3e-68	39.02	Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis th...	[more]
sp\|Q9SUH6\|PP341_ARATH	3.0e-68	39.62	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg18632-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9A6\|A0A1S3C9A6_CUCME	1.1e-216	84.36	pentatricopeptide repeat-containing protein At2g15690-like OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LEV9\|A0A0A0LEV9_CUCSA	3.2e-200	78.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000530 PE=4 SV=1	[more]
tr\|A0A2N9FV74\|A0A2N9FV74_FAGSY	9.0e-147	64.88	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22439 PE=4 SV=1	[more]
tr\|A5C1E4\|A5C1E4_VITVI	4.5e-146	59.71	Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_013147 P...	[more]
tr\|A0A2P5BNT2\|A0A2P5BNT2_PARAD	5.9e-146	59.14	DYW domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **INTERPRO**
Term	Definition
IPR006808	ATP_synth_F0_gsu_mt
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR032867	DYW_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18632	Carg18632	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA	Carg18632-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA.three_prime_UTR.1	Carg18632-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA.CDS.4	Carg18632-RA.CDS.4	CDS
Carg18632-RA.CDS.3	Carg18632-RA.CDS.3	CDS
Carg18632-RA.CDS.2	Carg18632-RA.CDS.2	CDS
Carg18632-RA.CDS.1	Carg18632-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18632-RA.exon.4	Carg18632-RA.exon.4	exon
Carg18632-RA.exon.3	Carg18632-RA.exon.3	exon
Carg18632-RA.exon.2	Carg18632-RA.exon.2	exon
Carg18632-RA.exon.1	Carg18632-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 355..449 e-value: 1.1E-32 score: 112.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 177..209 e-value: 7.3E-8 score: 30.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 174..221 e-value: 8.8E-10 score: 38.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 209..239 score: 6.259
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 143..173 score: 7.541
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 108..142 score: 5.338
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 245..275 score: 5.207
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..208 score: 12.507
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 83..240 e-value: 1.7E-26 score: 95.3
IPR006808	ATP synthase, F0 complex, subunit G, mitochondrial	PFAM	PF04718	ATP-synt_G	coord: 502..607 e-value: 2.7E-20 score: 73.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..73
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 52..375
None	No IPR available	PANTHER	PTHR24015:SF363	SUBFAMILY NOT NAMED	coord: 52..375