Carg18403-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTGTTAGTTACTTTGGTTTGGTTTAAATTATCTGAGTTTGAGAATGCTGTTCCCGAATACTTGGGTTGCGTGGTAGGTTGCAAAAGGAATAATGTTGTATACGAGCTGCCACGCATTAGAGAGTGCTTGAAGGCACAGTAGGACCTAAATATGTTTGTTGTAGAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTTTGTTTTCAAATTTTGATTGATATGATCTGAAAATGTCACTTGAACTTGGGAATGGTTGGATTTCAAATTTTGGTTAGACTTTGGTGGTTTTTACAGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA MASRPLQFQEYLKFWSRGAGVLVLVLGLGMVGVTMRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQWRWERDESKMPNSMASHMFNEGKH
BLAST of Carg18403-RA vs. NCBI nr
Match: XP_023512046.1 (uncharacterized protein LOC111776883 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38 Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of Carg18403-RA vs. NCBI nr
Match: XP_022986988.1 (uncharacterized protein LOC111484575 [Cucurbita maxima]) HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35 Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0
BLAST of Carg18403-RA vs. NCBI nr
Match: XP_022958684.1 (uncharacterized protein LOC111459838 [Cucurbita moschata] >XP_022958685.1 uncharacterized protein LOC111459838 [Cucurbita moschata]) HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35 Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg18403-RA vs. NCBI nr
Match: XP_022995120.1 (uncharacterized protein LOC111490759 [Cucurbita maxima] >XP_022995121.1 uncharacterized protein LOC111490759 [Cucurbita maxima]) HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35 Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg18403-RA vs. NCBI nr
Match: XP_023532076.1 (uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo] >XP_023532077.1 uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35 Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg18403-RA vs. TAIR10
Match: AT5G22040.1 (unknown protein) HSP 1 Score: 63.9 bits (154), Expect = 7.4e-11 Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of Carg18403-RA vs. TrEMBL
Match: tr|A0A1S3BME9|A0A1S3BME9_CUCME (uncharacterized protein LOC103491440 OS=Cucumis melo OX=3656 GN=LOC103491440 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35 Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg18403-RA vs. TrEMBL
Match: tr|A0A0A0KI70|A0A0A0KI70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35 Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg18403-RA vs. TrEMBL
Match: tr|W9QL24|W9QL24_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017136 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21 Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 0
BLAST of Carg18403-RA vs. TrEMBL
Match: tr|A0A2P5BQ08|A0A2P5BQ08_PARAD (Ubiquitin carboxyl-terminal hydrolase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_220290 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21 Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0
BLAST of Carg18403-RA vs. TrEMBL
Match: tr|A0A2N9HCG8|A0A2N9HCG8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37500 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20 Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|