Carg18403 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18403
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	Cucurbita_argyrosperma_scaffold_161 : 71197 .. 71810 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTGTTAGTTACTTTGGTTTGGTTTAAATTATCTGAGTTTGAGAATGCTGTTCCCGAATACTTGGGTTGCGTGGTAGGTTGCAAAAGGAATAATGTTGTATACGAGCTGCCACGCATTAGAGAGTGCTTGAAGGCACAGTAGGACCTAAATATGTTTGTTGTAGAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTTTGTTTTCAAATTTTGATTGATATGATCTGAAAATGTCACTTGAACTTGGGAATGGTTGGATTTCAAATTTTGGTTAGACTTTGGTGGTTTTTACAGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA

mRNA sequence

ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA

Coding sequence (CDS)

ATGGCGTCACGGCCACTTCAGTTTCAAGAATACTTAAAATTTTGGTCTAGAGGGGCTGGGGTGTTGGTCTTGGTCTTGGGATTGGGAATGGTGGGCGTAACAATGAGACAGCAGGGGCAATATCCTGATTCAGGACTTGGCTCATATTCAGTTTCTCAAATGCATCAAGTTCCCAGTCAAAGGATGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGAATTCATATATAGCTTCGAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA

Protein sequence

MASRPLQFQEYLKFWSRGAGVLVLVLGLGMVGVTMRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQWRWERDESKMPNSMASHMFNEGKH

Homology

[Close]

BLAST of Carg18403 vs. NCBI nr
Match: XP_023512046.1 (uncharacterized protein LOC111776883 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSY+ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYLASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSMASHMFNEG+
Sbjct: 61  RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. NCBI nr
Match: XP_022986988.1 (uncharacterized protein LOC111484575 [Cucurbita maxima])

HSP 1 Score: 157.1 bits (396), Expect = 3.5e-35
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQ QY DSGLGSYSVSQMHQVPSQR+EQSHPDPFEGRLEAFTPERENSYIASKNEDQW
Sbjct: 1   MRQQRQYSDSGLGSYSVSQMHQVPSQRIEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           R ERDESKMPNSMASHMFNEG+
Sbjct: 61  RRERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. NCBI nr
Match: XP_022958684.1 (uncharacterized protein LOC111459838 [Cucurbita moschata] >XP_022958685.1 uncharacterized protein LOC111459838 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGL SYS SQMH VPSQR+EQSHPDPFEGRLEAFTPERENS++ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSMASHMFNEG+
Sbjct: 61  RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. NCBI nr
Match: XP_022995120.1 (uncharacterized protein LOC111490759 [Cucurbita maxima] >XP_022995121.1 uncharacterized protein LOC111490759 [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGL SYS SQMH VPSQR+EQSHPDPFEGRLEAFTPERENS++ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSMASHMFNEG+
Sbjct: 61  RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. NCBI nr
Match: XP_023532076.1 (uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo] >XP_023532077.1 uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGL SYS SQMH VPSQR+EQSHPDPFEGRLEAFTPERENS++ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSMASHMFNEG+
Sbjct: 61  RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. TAIR10
Match: AT5G22040.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.4e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGS-YSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQ 94
           MR+QG + DS   S Y   Q        ++  H D F+G+LEAFTPER+  Y  S+ E Q
Sbjct: 1   MRRQGNFADSSPASAYGAGQ--------IQDPHSD-FQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 95  WRWERDESKMPNSMASHMFNEGK 117
           WRWERD   M   MA+ ++NEG+
Sbjct: 61  WRWERDGPNMSRPMATAVYNEGQ 74

[Close]

BLAST of Carg18403 vs. TrEMBL
Match: tr|A0A1S3BME9|A0A1S3BME9_CUCME (uncharacterized protein LOC103491440 OS=Cucumis melo OX=3656 GN=LOC103491440 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGLG+YSVSQMH VPSQ +EQSHPDPFEGRLEAFTPERE+SY+ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. TrEMBL
Match: tr|A0A0A0KI70|A0A0A0KI70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MRQQGQY DSGLG+YSVSQMH VPSQ +EQSHPDPFEGRLEAFTPERE+SY+ASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Carg18403 vs. TrEMBL
Match: tr|W9QL24|W9QL24_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017136 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 30  MVGVTMRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASK 89
           +V + MR+ GQY DSG+ +Y  + MH  P QRM+ + P  FEGRLEAFTPER+NSY  SK
Sbjct: 35  LVELIMRRTGQYADSGVNAYVAAPMHHAPGQRMD-NKPAQFEGRLEAFTPERDNSYATSK 94

Query: 90  NEDQWRWERDESKMPNSMASHMFNEGK 117
            + QWRWERD SKMPNS++S MFNEG+
Sbjct: 95  ADGQWRWERDGSKMPNSLSSQMFNEGQ 120

[Close]

BLAST of Carg18403 vs. TrEMBL
Match: tr|A0A2P5BQ08|A0A2P5BQ08_PARAD (Ubiquitin carboxyl-terminal hydrolase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_220290 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 35  MRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNEDQW 94
           MR+QGQY DSG+ +Y  +QMH    QRM+ + PD FEGRLEAFTPER+N Y+ SK E QW
Sbjct: 1   MRRQGQYADSGVNAYVAAQMHHASGQRMD-NKPDQFEGRLEAFTPERDNPYVMSKTEGQW 60

Query: 95  RWERDESKMPNSMASHMFNEGK 117
           RWERD SKM NS+ S +FNEG+
Sbjct: 61  RWERDGSKMSNSLNSQIFNEGQ 81

[Close]

BLAST of Carg18403 vs. TrEMBL
Match: tr|A0A2N9HCG8|A0A2N9HCG8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37500 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 33  VTMRQQGQYPDSGLGSYSVSQMHQVPSQRMEQSHPDPFEGRLEAFTPERENSYIASKNED 92
           + MR+QGQY DSG  +Y   QMH + SQRME   P  F+GRLEAFTPERE+ Y  SK E 
Sbjct: 44  IVMRRQGQYADSGGNTYVGGQMHHMSSQRMEPK-PGNFQGRLEAFTPEREHPYGNSKAEG 103

Query: 93  QWRWERDESKMPNSMASHMFNEGK 117
           QWRWERD SKM NSMASHMFNEG+
Sbjct: 104 QWRWERDGSKMSNSMASHMFNEGQ 126

The following BLAST results are available for this feature:

BLAST of Carg18403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512046.1	5.8e-38	96.34	uncharacterized protein LOC111776883 [Cucurbita pepo subsp. pepo]	[more]
XP_022986988.1	3.5e-35	93.90	uncharacterized protein LOC111484575 [Cucurbita maxima]	[more]
XP_022958684.1	4.6e-35	90.24	uncharacterized protein LOC111459838 [Cucurbita moschata] >XP_022958685.1 unchar...	[more]
XP_022995120.1	4.6e-35	90.24	uncharacterized protein LOC111490759 [Cucurbita maxima] >XP_022995121.1 uncharac...	[more]
XP_023532076.1	4.6e-35	90.24	uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo] >XP_023532077....	[more]

BLAST of Carg18403 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22040.1	7.4e-11	44.58	unknown protein	[more]

BLAST of Carg18403 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18403 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BME9\|A0A1S3BME9_CUCME	4.0e-35	89.02	uncharacterized protein LOC103491440 OS=Cucumis melo OX=3656 GN=LOC103491440 PE=...	[more]
tr\|A0A0A0KI70\|A0A0A0KI70_CUCSA	4.0e-35	89.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1	[more]
tr\|W9QL24\|W9QL24_9ROSA	4.3e-21	60.92	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017136 PE=4 SV=1	[more]
tr\|A0A2P5BQ08\|A0A2P5BQ08_PARAD	9.6e-21	63.41	Ubiquitin carboxyl-terminal hydrolase OS=Parasponia andersonii OX=3476 GN=PanWU0...	[more]
tr\|A0A2N9HCG8\|A0A2N9HCG8_FAGSY	1.2e-20	66.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37500 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18403-RA	Carg18403-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..117
None	No IPR available	PANTHER	PTHR34210:SF1	SUBFAMILY NOT NAMED	coord: 35..116
None	No IPR available	PANTHER	PTHR34210	FAMILY NOT NAMED	coord: 35..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18403	Cla008613	Watermelon (97103) v1	carwmB0413
Carg18403	Lsi10G011310	Bottle gourd (USVL1VR-Ls)	carlsiB375

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18403	Silver-seed gourd	carcarB289
Carg18403	Silver-seed gourd	carcarB433
Carg18403	Cucumber (Gy14) v2	carcgybB0421
Carg18403	Cucumber (Gy14) v1	carcgyB0481
Carg18403	Cucumber (Gy14) v1	carcgyB0478
Carg18403	Cucurbita maxima (Rimu)	carcmaB0575
Carg18403	Cucurbita maxima (Rimu)	carcmaB0576
Carg18403	Cucurbita maxima (Rimu)	carcmaB0578
Carg18403	Cucurbita moschata (Rifu)	carcmoB0559
Carg18403	Cucurbita moschata (Rifu)	carcmoB0560
Carg18403	Cucurbita moschata (Rifu)	carcmoB0562
Carg18403	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18403	Cucurbita pepo (Zucchini)	carcpeB0583
Carg18403	Cucurbita pepo (Zucchini)	carcpeB0584
Carg18403	Wild cucumber (PI 183967)	carcpiB0449
Carg18403	Wild cucumber (PI 183967)	carcpiB0450
Carg18403	Cucumber (Chinese Long) v2	carcuB0444
Carg18403	Cucumber (Chinese Long) v2	carcuB0445
Carg18403	Cucumber (Chinese Long) v3	carcucB0445
Carg18403	Cucumber (Chinese Long) v3	carcucB0446
Carg18403	Bottle gourd (USVL1VR-Ls)	carlsiB378
Carg18403	Melon (DHL92) v3.5.1	carmeB0422
Carg18403	Melon (DHL92) v3.5.1	carmeB0423
Carg18403	Melon (DHL92) v3.6.1	carmedB0425
Carg18403	Melon (DHL92) v3.6.1	carmedB0426
Carg18403	Watermelon (Charleston Gray)	carwcgB0407
Carg18403	Watermelon (Charleston Gray)	carwcgB0409
Carg18403	Watermelon (97103) v1	carwmB0411
Carg18403	Watermelon (97103) v2	carwmbB0437
Carg18403	Watermelon (97103) v2	carwmbB0439
Carg18403	Wax gourd	carwgoB0501