Carg18326-RA (mRNA) Silver-seed gourd

Overview
NameCarg18326-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTelomere repeat-binding protein
LocationCucurbita_argyrosperma_scaffold_106 : 102607 .. 103452 (+)
Sequence length360
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGTTTCCTTTTTGCAGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGTGGATTTGCCTTCTCCTTAACATGTGTTCAGGTGATCGGTTTCTAGCATACAGATAAAAGTCTAACCTGATGAGGGTGTGTTGCAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGTTAGGCTTCTAGTCTAACAGGAAAGTTCCCACATTTAATGTAAAAAAGGAAAGTAGGTACATTTGACTCTGCTGTAATCAACCAAGGAAGGCAAATTGTAAGCATGATTTCAATTTCTTGTATCCTCACACTTTGATTCATTGTTTAGCCATCCCATTTGGGAGGAGTTGTCAGTTGTAAATATGATTCTTGTAATAATGAAATTCTAACAGGATTCTTTCTGTGTTTAGACATTCAATATGTTCAGTTTTACTGTAGCCGATGAATATCATGAAACTCAACTGTAAATCTTAGACAGGTGATATTTTGACCTTAAGGGTTCTTCCTTTCTTTTTGGTTTATTGAATTCCACCAATACTTTCATGTTCTTGACAAAGTCAGGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

mRNA sequence

ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

Coding sequence (CDS)

ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

Protein sequence

MIDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAIEGSSCCVRNRAFSVEFEHSLVARSY
Homology
[Close]
BLAST of Carg18326-RA vs. NCBI nr
Match: XP_022942555.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 591 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 650

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 651 QHQAKQHSKHHQAGVVKAIEGSSC 674

[Close]
BLAST of Carg18326-RA vs. NCBI nr
Match: XP_022942552.1 (telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata] >XP_022942553.1 telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 592 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 651

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 652 QHQAKQHSKHHQAGVVKAIEGSSC 675

[Close]
BLAST of Carg18326-RA vs. NCBI nr
Match: XP_022995213.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 598 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 657

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 658 QHQAKQHSKHHQAGVVKAIEGSSC 681

[Close]
BLAST of Carg18326-RA vs. NCBI nr
Match: XP_022995195.1 (telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_022995204.1 telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 599 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 658

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 659 QHQAKQHSKHHQAGVVKAIEGSSC 682

[Close]
BLAST of Carg18326-RA vs. NCBI nr
Match: XP_023539928.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 598 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 657

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 658 QHQAKQHSKHHQAGVVKAIEGSSC 681

[Close]
BLAST of Carg18326-RA vs. TAIR10
Match: AT5G13820.1 (telomeric DNA binding protein 1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-32
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENA HRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL AH YW+
Sbjct: 557 RWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWT 616

Query: 76  QHQAKQHSKHHQAGVVKAIEGSS 99
           QHQ KQ+ KH  A  +    GSS
Sbjct: 617 QHQMKQNGKHQVATTMVVEAGSS 639

[Close]
BLAST of Carg18326-RA vs. TAIR10
Match: AT3G46590.2 (TRF-like 1)

HSP 1 Score: 130.2 bits (326), Expect = 8.6e-31
Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ
Sbjct: 461 VEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 520

Query: 62  ELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAI 95
           ELLDRVL AHAYWSQH   Q      +  V+A+
Sbjct: 521 ELLDRVLKAHAYWSQHLMHQLQTEPPSTQVEAL 553

[Close]
BLAST of Carg18326-RA vs. TAIR10
Match: AT1G07540.1 (TRF-like 2)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAF+NA HRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVL AHAYWS
Sbjct: 550 RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWS 609

Query: 76  QHQAK 81
           Q Q K
Sbjct: 610 QQQGK 614

[Close]
BLAST of Carg18326-RA vs. TAIR10
Match: AT3G12560.1 (TRF-like 9)

HSP 1 Score: 127.9 bits (320), Expect = 4.2e-30
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL A+ YWS
Sbjct: 531 RWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLRAYGYWS 590

Query: 76  QHQAKQHSK 85
           QHQ K  ++
Sbjct: 591 QHQGKHQAR 599

[Close]
BLAST of Carg18326-RA vs. TAIR10
Match: AT5G59430.1 (telomeric repeat binding protein 1)

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0 

Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK  AFE+ADHRTYVDLKDKWKTLVHTA+ISPQQRRGEPVPQ
Sbjct: 476 VEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQ 535

Query: 62  ELLDRVLAAHAYWSQHQAKQ 82
           ELL+RVL AH YW+Q Q +Q
Sbjct: 536 ELLNRVLNAHGYWTQQQMQQ 555

[Close]
BLAST of Carg18326-RA vs. Swiss-Prot
Match: sp|Q9FFY9|TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=TRP4 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-31
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENA HRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL AH YW+
Sbjct: 557 RWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWT 616

Query: 76  QHQAKQHSKHHQAGVVKAIEGSS 99
           QHQ KQ+ KH  A  +    GSS
Sbjct: 617 QHQMKQNGKHQVATTMVVEAGSS 639

[Close]
BLAST of Carg18326-RA vs. Swiss-Prot
Match: sp|Q9SNB9|TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TRP2 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-29
Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 0 

Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ
Sbjct: 461 VEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 520

Query: 62  ELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAI 95
           ELLDRVL AHAYWSQH   Q      +  V+A+
Sbjct: 521 ELLDRVLKAHAYWSQHLMHQLQTEPPSTQVEAL 553

[Close]
BLAST of Carg18326-RA vs. Swiss-Prot
Match: sp|Q6R0E3|TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=TRP5 PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-29
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAF+NA HRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVL AHAYWS
Sbjct: 550 RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWS 609

Query: 76  QHQAK 81
           Q Q K
Sbjct: 610 QQQGK 614

[Close]
BLAST of Carg18326-RA vs. Swiss-Prot
Match: sp|Q9C7B1|TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.7e-29
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL A+ YWS
Sbjct: 531 RWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLRAYGYWS 590

Query: 76  QHQAKQHSK 85
           QHQ K  ++
Sbjct: 591 QHQGKHQAR 599

[Close]
BLAST of Carg18326-RA vs. Swiss-Prot
Match: sp|Q9LL45|TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP1 PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 58/67 (86.57%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFEN  HRTYVDLKDKWKTLVHTA I+PQQRRG PVPQELLDRVLAA AYWS
Sbjct: 556 RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWS 615

Query: 76  QHQAKQH 83
           + QAK H
Sbjct: 616 EQQAKLH 622

[Close]
BLAST of Carg18326-RA vs. TrEMBL
Match: tr|A0A1S3CF65|A0A1S3CF65_CUCME (telomere repeat-binding protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500226 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 606 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 665

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH SKH QAGVVKAIEGSS
Sbjct: 666 QHQAKQHGSKHLQAGVVKAIEGSS 689

[Close]
BLAST of Carg18326-RA vs. TrEMBL
Match: tr|A0A1S3CGL1|A0A1S3CGL1_CUCME (telomere repeat-binding protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500226 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 605 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 664

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH SKH QAGVVKAIEGSS
Sbjct: 665 QHQAKQHGSKHLQAGVVKAIEGSS 688

[Close]
BLAST of Carg18326-RA vs. TrEMBL
Match: tr|A0A0A0KLV9|A0A0A0KLV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182630 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.7e-38
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 606 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 665

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH  KH QAGVVKAIEGSS
Sbjct: 666 QHQAKQHGGKHLQAGVVKAIEGSS 689

[Close]
BLAST of Carg18326-RA vs. TrEMBL
Match: tr|A0A067LKS0|A0A067LKS0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01439 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-33
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENADHRTYVDLKDKWKTLVHTA+I+PQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 614 RWRDVKLRSFENADHRTYVDLKDKWKTLVHTAKIAPQQRRGEPVPQELLDRVLAAHAYWS 673

Query: 76  QHQAKQHSKHHQAGVVKAIEG 97
           QHQAKQH K +QAGV+K  EG
Sbjct: 674 QHQAKQHGK-NQAGVLKITEG 693

[Close]
BLAST of Carg18326-RA vs. TrEMBL
Match: tr|A0A251QKP0|A0A251QKP0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G237100 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFENADHRTYVDLKDKWKTLVHTA+ISPQQRRGEPVPQELLDRVLAAH+YW 
Sbjct: 606 RWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLAAHSYWC 665

Query: 76  QHQAKQHSKHHQAGVVKAIE 96
           QHQAKQH K HQ G++K  E
Sbjct: 666 QHQAKQHGK-HQGGIMKITE 684

The following BLAST results are available for this feature:
BLAST of Carg18326-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942555.18.8e-42100.00telomere repeat-binding protein 4-like isoform X2 [Cucurbita moschata][more]
XP_022942552.18.8e-42100.00telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata] >XP_02294... [more]
XP_022995213.18.8e-42100.00telomere repeat-binding protein 4-like isoform X2 [Cucurbita maxima][more]
XP_022995195.18.8e-42100.00telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_0229952... [more]
XP_023539928.18.8e-42100.00telomere repeat-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg18326-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13820.11.6e-3277.11telomeric DNA binding protein 1[more]
AT3G46590.28.6e-3169.89TRF-like 1[more]
AT1G07540.12.5e-3090.77TRF-like 2[more]
AT3G12560.14.2e-3084.06TRF-like 9[more]
AT5G59430.13.0e-2872.50telomeric repeat binding protein 1[more]
BLAST of Carg18326-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFY9|TRP4_ARATH2.8e-3177.11Telomere repeat-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=TRP4 PE=1 S... [more]
sp|Q9SNB9|TRP2_ARATH1.5e-2969.89Telomere repeat-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TRP2 PE=1 S... [more]
sp|Q6R0E3|TRP5_ARATH4.5e-2990.77Telomere repeat-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=TRP5 PE=1 S... [more]
sp|Q9C7B1|TRP3_ARATH7.7e-2984.06Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 S... [more]
sp|Q9LL45|TBP1_ORYSJ3.8e-2886.57Telomere-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP1 PE=1... [more]
BLAST of Carg18326-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CF65|A0A1S3CF65_CUCME3.0e-3897.62telomere repeat-binding protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A1S3CGL1|A0A1S3CGL1_CUCME3.0e-3897.62telomere repeat-binding protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A0A0KLV9|A0A0A0KLV9_CUCSA8.7e-3896.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182630 PE=4 SV=1[more]
tr|A0A067LKS0|A0A067LKS0_JATCU2.2e-3387.65Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01439 PE=4 SV=1[more]
tr|A0A251QKP0|A0A251QKP0_PRUPE1.1e-3286.25Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G237100 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg18326Carg18326gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg18326-RACarg18326-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18326-RA.exon.1Carg18326-RA.exon.1exon
Carg18326-RA.exon.2Carg18326-RA.exon.2exon
Carg18326-RA.exon.3Carg18326-RA.exon.3exon
Carg18326-RA.exon.4Carg18326-RA.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg18326-RA.CDS.1Carg18326-RA.CDS.1CDS
Carg18326-RA.CDS.2Carg18326-RA.CDS.2CDS
Carg18326-RA.CDS.3Carg18326-RA.CDS.3CDS
Carg18326-RA.CDS.4Carg18326-RA.CDS.4CDS


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.246.220coord: 11..86
e-value: 4.6E-30
score: 105.6
NoneNo IPR availablePANTHERPTHR21717:SF60TELOMERE REPEAT-BINDING PROTEIN 3-RELATEDcoord: 16..95
NoneNo IPR availablePANTHERPTHR21717TELOMERIC REPEAT BINDING PROTEINcoord: 16..95
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 16..76