Carg18326 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18326
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Telomere repeat-binding protein
Location	Cucurbita_argyrosperma_scaffold_106 : 102607 .. 103452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGTTTCCTTTTTGCAGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGTGGATTTGCCTTCTCCTTAACATGTGTTCAGGTGATCGGTTTCTAGCATACAGATAAAAGTCTAACCTGATGAGGGTGTGTTGCAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGTTAGGCTTCTAGTCTAACAGGAAAGTTCCCACATTTAATGTAAAAAAGGAAAGTAGGTACATTTGACTCTGCTGTAATCAACCAAGGAAGGCAAATTGTAAGCATGATTTCAATTTCTTGTATCCTCACACTTTGATTCATTGTTTAGCCATCCCATTTGGGAGGAGTTGTCAGTTGTAAATATGATTCTTGTAATAATGAAATTCTAACAGGATTCTTTCTGTGTTTAGACATTCAATATGTTCAGTTTTACTGTAGCCGATGAATATCATGAAACTCAACTGTAAATCTTAGACAGGTGATATTTTGACCTTAAGGGTTCTTCCTTTCTTTTTGGTTTATTGAATTCCACCAATACTTTCATGTTCTTGACAAAGTCAGGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

mRNA sequence

ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

Coding sequence (CDS)

ATGATTGATGCCATTGTGAAGCACAAGTTAAAACCAATTGAAATCCGGTGGCGGGATGTTAAGTTTCGTGCATTTGAGAATGCAGATCATCGAACTTACGTGGATTTGAAGGATAAATGGAAAACCCTGGTTCACACGGCGAGAATATCCCCTCAGCAGAGAAGAGGCGAGCCTGTCCCACAAGAACTTCTGGACCGGGTGCTGGCTGCACATGCTTACTGGTCGCAGCATCAGGCAAAGCAACACAGCAAGCATCATCAAGCTGGAGTTGTGAAGGCCATTGAGGGCTCCAGCTGCTGTGTTAGAAATAGGGCATTTAGTGTTGAATTTGAGCACTCTTTGGTGGCCAGATCATATTAA

Protein sequence

MIDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAIEGSSCCVRNRAFSVEFEHSLVARSY

Homology

[Close]

BLAST of Carg18326 vs. NCBI nr
Match: XP_022942555.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 591 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 650

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 651 QHQAKQHSKHHQAGVVKAIEGSSC 674

[Close]

BLAST of Carg18326 vs. NCBI nr
Match: XP_022942552.1 (telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata] >XP_022942553.1 telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 592 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 651

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 652 QHQAKQHSKHHQAGVVKAIEGSSC 675

[Close]

BLAST of Carg18326 vs. NCBI nr
Match: XP_022995213.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 598 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 657

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 658 QHQAKQHSKHHQAGVVKAIEGSSC 681

[Close]

BLAST of Carg18326 vs. NCBI nr
Match: XP_022995195.1 (telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_022995204.1 telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 599 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 658

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 659 QHQAKQHSKHHQAGVVKAIEGSSC 682

[Close]

BLAST of Carg18326 vs. NCBI nr
Match: XP_023539928.1 (telomere repeat-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 598 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 657

Query: 76  QHQAKQHSKHHQAGVVKAIEGSSC 100
           QHQAKQHSKHHQAGVVKAIEGSSC
Sbjct: 658 QHQAKQHSKHHQAGVVKAIEGSSC 681

[Close]

BLAST of Carg18326 vs. TAIR10
Match: AT5G13820.1 (telomeric DNA binding protein 1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-32
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENA HRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL AH YW+
Sbjct: 557 RWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWT 616

Query: 76  QHQAKQHSKHHQAGVVKAIEGSS 99
           QHQ KQ+ KH  A  +    GSS
Sbjct: 617 QHQMKQNGKHQVATTMVVEAGSS 639

[Close]

BLAST of Carg18326 vs. TAIR10
Match: AT3G46590.2 (TRF-like 1)

HSP 1 Score: 130.2 bits (326), Expect = 8.6e-31
Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ
Sbjct: 461 VEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 520

Query: 62  ELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAI 95
           ELLDRVL AHAYWSQH   Q      +  V+A+
Sbjct: 521 ELLDRVLKAHAYWSQHLMHQLQTEPPSTQVEAL 553

[Close]

BLAST of Carg18326 vs. TAIR10
Match: AT1G07540.1 (TRF-like 2)

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-30
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAF+NA HRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVL AHAYWS
Sbjct: 550 RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWS 609

Query: 76  QHQAK 81
           Q Q K
Sbjct: 610 QQQGK 614

[Close]

BLAST of Carg18326 vs. TAIR10
Match: AT3G12560.1 (TRF-like 9)

HSP 1 Score: 127.9 bits (320), Expect = 4.2e-30
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL A+ YWS
Sbjct: 531 RWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLRAYGYWS 590

Query: 76  QHQAKQHSK 85
           QHQ K  ++
Sbjct: 591 QHQGKHQAR 599

[Close]

BLAST of Carg18326 vs. TAIR10
Match: AT5G59430.1 (telomeric repeat binding protein 1)

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK  AFE+ADHRTYVDLKDKWKTLVHTA+ISPQQRRGEPVPQ
Sbjct: 476 VEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQ 535

Query: 62  ELLDRVLAAHAYWSQHQAKQ 82
           ELL+RVL AH YW+Q Q +Q
Sbjct: 536 ELLNRVLNAHGYWTQQQMQQ 555

[Close]

BLAST of Carg18326 vs. Swiss-Prot
Match: sp|Q9FFY9|TRP4_ARATH (Telomere repeat-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=TRP4 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-31
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENA HRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL AH YW+
Sbjct: 557 RWRDVKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLGAHRYWT 616

Query: 76  QHQAKQHSKHHQAGVVKAIEGSS 99
           QHQ KQ+ KH  A  +    GSS
Sbjct: 617 QHQMKQNGKHQVATTMVVEAGSS 639

[Close]

BLAST of Carg18326 vs. Swiss-Prot
Match: sp|Q9SNB9|TRP2_ARATH (Telomere repeat-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TRP2 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-29
Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 2   IDAIVKHKLKPIEIRWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 61
           ++A+V+   K    RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ
Sbjct: 461 VEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQ 520

Query: 62  ELLDRVLAAHAYWSQHQAKQHSKHHQAGVVKAI 95
           ELLDRVL AHAYWSQH   Q      +  V+A+
Sbjct: 521 ELLDRVLKAHAYWSQHLMHQLQTEPPSTQVEAL 553

[Close]

BLAST of Carg18326 vs. Swiss-Prot
Match: sp|Q6R0E3|TRP5_ARATH (Telomere repeat-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=TRP5 PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-29
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAF+NA HRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVL AHAYWS
Sbjct: 550 RWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWS 609

Query: 76  QHQAK 81
           Q Q K
Sbjct: 610 QQQGK 614

[Close]

BLAST of Carg18326 vs. Swiss-Prot
Match: sp|Q9C7B1|TRP3_ARATH (Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.7e-29
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFE+ADHRTYVDLKDKWKTLVHTA ISPQQRRGEPVPQELLDRVL A+ YWS
Sbjct: 531 RWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELLDRVLRAYGYWS 590

Query: 76  QHQAKQHSK 85
           QHQ K  ++
Sbjct: 591 QHQGKHQAR 599

[Close]

BLAST of Carg18326 vs. Swiss-Prot
Match: sp|Q9LL45|TBP1_ORYSJ (Telomere-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP1 PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-28
Identity = 58/67 (86.57%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFEN  HRTYVDLKDKWKTLVHTA I+PQQRRG PVPQELLDRVLAA AYWS
Sbjct: 556 RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWS 615

Query: 76  QHQAKQH 83
           + QAK H
Sbjct: 616 EQQAKLH 622

[Close]

BLAST of Carg18326 vs. TrEMBL
Match: tr|A0A1S3CF65|A0A1S3CF65_CUCME (telomere repeat-binding protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500226 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 606 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 665

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH SKH QAGVVKAIEGSS
Sbjct: 666 QHQAKQHGSKHLQAGVVKAIEGSS 689

[Close]

BLAST of Carg18326 vs. TrEMBL
Match: tr|A0A1S3CGL1|A0A1S3CGL1_CUCME (telomere repeat-binding protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500226 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-38
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 605 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 664

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH SKH QAGVVKAIEGSS
Sbjct: 665 QHQAKQHGSKHLQAGVVKAIEGSS 688

[Close]

BLAST of Carg18326 vs. TrEMBL
Match: tr|A0A0A0KLV9|A0A0A0KLV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182630 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.7e-38
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 606 RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 665

Query: 76  QHQAKQH-SKHHQAGVVKAIEGSS 99
           QHQAKQH  KH QAGVVKAIEGSS
Sbjct: 666 QHQAKQHGGKHLQAGVVKAIEGSS 689

[Close]

BLAST of Carg18326 vs. TrEMBL
Match: tr|A0A067LKS0|A0A067LKS0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01439 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-33
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK R+FENADHRTYVDLKDKWKTLVHTA+I+PQQRRGEPVPQELLDRVLAAHAYWS
Sbjct: 614 RWRDVKLRSFENADHRTYVDLKDKWKTLVHTAKIAPQQRRGEPVPQELLDRVLAAHAYWS 673

Query: 76  QHQAKQHSKHHQAGVVKAIEG 97
           QHQAKQH K +QAGV+K  EG
Sbjct: 674 QHQAKQHGK-NQAGVLKITEG 693

[Close]

BLAST of Carg18326 vs. TrEMBL
Match: tr|A0A251QKP0|A0A251QKP0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G237100 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 16  RWRDVKFRAFENADHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWS 75
           RWRDVK RAFENADHRTYVDLKDKWKTLVHTA+ISPQQRRGEPVPQELLDRVLAAH+YW 
Sbjct: 606 RWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLAAHSYWC 665

Query: 76  QHQAKQHSKHHQAGVVKAIE 96
           QHQAKQH K HQ G++K  E
Sbjct: 666 QHQAKQHGK-HQGGIMKITE 684

The following BLAST results are available for this feature:

BLAST of Carg18326 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942555.1	8.8e-42	100.00	telomere repeat-binding protein 4-like isoform X2 [Cucurbita moschata]	[more]
XP_022942552.1	8.8e-42	100.00	telomere repeat-binding protein 4-like isoform X1 [Cucurbita moschata] >XP_02294...	[more]
XP_022995213.1	8.8e-42	100.00	telomere repeat-binding protein 4-like isoform X2 [Cucurbita maxima]	[more]
XP_022995195.1	8.8e-42	100.00	telomere repeat-binding protein 4-like isoform X1 [Cucurbita maxima] >XP_0229952...	[more]
XP_023539928.1	8.8e-42	100.00	telomere repeat-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18326 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13820.1	1.6e-32	77.11	telomeric DNA binding protein 1	[more]
AT3G46590.2	8.6e-31	69.89	TRF-like 1	[more]
AT1G07540.1	2.5e-30	90.77	TRF-like 2	[more]
AT3G12560.1	4.2e-30	84.06	TRF-like 9	[more]
AT5G59430.1	3.0e-28	72.50	telomeric repeat binding protein 1	[more]

BLAST of Carg18326 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFY9\|TRP4_ARATH	2.8e-31	77.11	Telomere repeat-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=TRP4 PE=1 S...	[more]
sp\|Q9SNB9\|TRP2_ARATH	1.5e-29	69.89	Telomere repeat-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TRP2 PE=1 S...	[more]
sp\|Q6R0E3\|TRP5_ARATH	4.5e-29	90.77	Telomere repeat-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=TRP5 PE=1 S...	[more]
sp\|Q9C7B1\|TRP3_ARATH	7.7e-29	84.06	Telomere repeat-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=TRP3 PE=1 S...	[more]
sp\|Q9LL45\|TBP1_ORYSJ	3.8e-28	86.57	Telomere-binding protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP1 PE=1...	[more]

BLAST of Carg18326 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CF65\|A0A1S3CF65_CUCME	3.0e-38	97.62	telomere repeat-binding protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A1S3CGL1\|A0A1S3CGL1_CUCME	3.0e-38	97.62	telomere repeat-binding protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A0A0KLV9\|A0A0A0KLV9_CUCSA	8.7e-38	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182630 PE=4 SV=1	[more]
tr\|A0A067LKS0\|A0A067LKS0_JATCU	2.2e-33	87.65	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_01439 PE=4 SV=1	[more]
tr\|A0A251QKP0\|A0A251QKP0_PRUPE	1.1e-32	86.25	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G237100 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18326-RA	Carg18326-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.246.220		coord: 11..86 e-value: 4.6E-30 score: 105.6
None	No IPR available	PANTHER	PTHR21717:SF60	TELOMERE REPEAT-BINDING PROTEIN 3-RELATED	coord: 16..95
None	No IPR available	PANTHER	PTHR21717	TELOMERIC REPEAT BINDING PROTEIN	coord: 16..95
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 16..76

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18326	Cucurbita pepo (Zucchini)	carcpeB0128
Carg18326	Silver-seed gourd	carcarB095
Carg18326	Silver-seed gourd	carcarB097
Carg18326	Silver-seed gourd	carcarB099
Carg18326	Cucumber (Gy14) v2	carcgybB0098
Carg18326	Cucumber (Gy14) v2	carcgybB0099
Carg18326	Cucumber (Gy14) v1	carcgyB0105
Carg18326	Cucumber (Gy14) v1	carcgyB0107
Carg18326	Cucumber (Gy14) v1	carcgyB0108
Carg18326	Cucurbita maxima (Rimu)	carcmaB0113
Carg18326	Cucurbita maxima (Rimu)	carcmaB0114
Carg18326	Cucurbita maxima (Rimu)	carcmaB0115
Carg18326	Cucurbita maxima (Rimu)	carcmaB0116
Carg18326	Cucurbita moschata (Rifu)	carcmoB0121
Carg18326	Cucurbita moschata (Rifu)	carcmoB0122
Carg18326	Cucurbita moschata (Rifu)	carcmoB0123
Carg18326	Cucurbita moschata (Rifu)	carcmoB0124
Carg18326	Cucurbita pepo (Zucchini)	carcpeB0130
Carg18326	Cucurbita pepo (Zucchini)	carcpeB0131
Carg18326	Cucurbita pepo (Zucchini)	carcpeB0132
Carg18326	Wild cucumber (PI 183967)	carcpiB0102
Carg18326	Wild cucumber (PI 183967)	carcpiB0104
Carg18326	Cucumber (Chinese Long) v2	carcuB0098
Carg18326	Cucumber (Chinese Long) v2	carcuB0099
Carg18326	Cucumber (Chinese Long) v3	carcucB0105
Carg18326	Cucumber (Chinese Long) v3	carcucB0107
Carg18326	Bottle gourd (USVL1VR-Ls)	carlsiB080
Carg18326	Melon (DHL92) v3.5.1	carmeB0089
Carg18326	Melon (DHL92) v3.5.1	carmeB0092
Carg18326	Melon (DHL92) v3.5.1	carmeB0093
Carg18326	Melon (DHL92) v3.6.1	carmedB0091
Carg18326	Melon (DHL92) v3.6.1	carmedB0093
Carg18326	Melon (DHL92) v3.6.1	carmedB0095
Carg18326	Watermelon (Charleston Gray)	carwcgB0089
Carg18326	Watermelon (Charleston Gray)	carwcgB0090
Carg18326	Watermelon (97103) v1	carwmB0087
Carg18326	Watermelon (97103) v2	carwmbB0089
Carg18326	Watermelon (97103) v2	carwmbB0090
Carg18326	Watermelon (97103) v2	carwmbB0091
Carg18326	Wax gourd	carwgoB0100
Carg18326	Wax gourd	carwgoB0102